Class CallableProfileProfileAligner<S extends Sequence<C>,​C extends Compound>

  • Type Parameters:
    S - each Sequence of the Profile pair is of type S
    C - each element of an AlignedSequence is a Compound of type C
    All Implemented Interfaces:
    java.util.concurrent.Callable<ProfilePair<S,​C>>

    public class CallableProfileProfileAligner<S extends Sequence<C>,​C extends Compound>
    extends java.lang.Object
    implements java.util.concurrent.Callable<ProfilePair<S,​C>>
    Implements a concurrency wrapper for a ProfileProfileAligner.
    Author:
    Mark Chapman
    • Constructor Detail

      • CallableProfileProfileAligner

        public CallableProfileProfileAligner​(ProfileProfileAligner<S,​C> ppa)
        Creates a profile-profile alignment task for simplified parallel execution.
        Parameters:
        ppa - already initialized profile-profile aligner
    • Method Detail

      • call

        public ProfilePair<S,​C> call()
        Specified by:
        call in interface java.util.concurrent.Callable<S extends Sequence<C>>