Class IUPACParser.IUPACTable

  • All Implemented Interfaces:
    Table
    Enclosing class:
    IUPACParser

    public static class IUPACParser.IUPACTable
    extends java.lang.Object
    implements Table
    Holds the concept of a codon table from the IUPAC format
    Author:
    Andy Yates
    • Constructor Detail

      • IUPACTable

        public IUPACTable​(java.lang.String name,
                          int id,
                          java.lang.String aminoAcidString,
                          java.lang.String startCodons,
                          java.lang.String baseOne,
                          java.lang.String baseTwo,
                          java.lang.String baseThree)
      • IUPACTable

        public IUPACTable​(java.lang.String name,
                          java.lang.Integer id,
                          java.lang.String aminoAcidString,
                          java.lang.String startCodons)
        Constructor which uses the basic IUPAC codon table format. Useful if you need to specify your own IUPAC table with minimal definitions from your side.