Class SupportCount


  • public final class SupportCount
    extends java.lang.Object
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static double compare​(Phylogeny phylogeny, Phylogeny evaluator_phylogeny, boolean strip_evaluator_phylogeny, boolean update_support_in_phylogeny, boolean re_root)  
      static void count​(Phylogeny phylogeny, Phylogeny[] evaluator_phylogenies, boolean strip_evaluator_phylogenies, boolean verbose)  
      static java.util.List<Phylogeny> count​(Phylogeny phylogeny, Phylogeny[] evaluator_phylogenies, boolean strip_evaluator_phylogenies, double similarity_threshold, boolean verbose)
      This counts the support of topology phylogeny by the topologies in phylogenies.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Method Detail

      • compare

        public static double compare​(Phylogeny phylogeny,
                                     Phylogeny evaluator_phylogeny,
                                     boolean strip_evaluator_phylogeny,
                                     boolean update_support_in_phylogeny,
                                     boolean re_root)
      • count

        public static void count​(Phylogeny phylogeny,
                                 Phylogeny[] evaluator_phylogenies,
                                 boolean strip_evaluator_phylogenies,
                                 boolean verbose)
      • count

        public static java.util.List<Phylogeny> count​(Phylogeny phylogeny,
                                                      Phylogeny[] evaluator_phylogenies,
                                                      boolean strip_evaluator_phylogenies,
                                                      double similarity_threshold,
                                                      boolean verbose)
        This counts the support of topology phylogeny by the topologies in phylogenies. If phylogenies contains topogies with names not present in phylogeny, strip_phylogenies must be set to true. phylogeny must not contain names not found in all phylogenies.
        Parameters:
        phylogeny - the topology to be evaluated
        evaluator_phylogenies - the topologies used for evaluation
        strip_evaluator_phylogenies - set to true if phylogenies contains topologies with names not present in phylogeny