Package org.forester.io.parsers.phyloxml
Class PhyloXmlUtil
- java.lang.Object
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- org.forester.io.parsers.phyloxml.PhyloXmlUtil
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public final class PhyloXmlUtil extends java.lang.Object
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Field Summary
Fields Modifier and Type Field Description static java.util.regex.Pattern
LIT_REF_DOI_PATTERN
static java.lang.String
OTHER
static int
ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT
static java.lang.String
SEQ_TYPE_DNA
static java.lang.String
SEQ_TYPE_PROTEIN
static java.lang.String
SEQ_TYPE_RNA
static java.util.regex.Pattern
SEQUENCE_SYMBOL_PATTERN
static java.util.Set<java.lang.String>
SEQUENCE_TYPES
static java.util.regex.Pattern
TAXOMONY_CODE_PATTERN
static java.util.List<java.lang.String>
TAXONOMY_RANKS_LIST
static java.util.Set<java.lang.String>
TAXONOMY_RANKS_SET
static java.lang.String
UNIPROT_TAX_PROVIDER
static java.lang.String
UNKNOWN
static java.lang.String
VECTOR_PROPERTY_REF
static java.lang.String
VECTOR_PROPERTY_TYPE
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Constructor Summary
Constructors Constructor Description PhyloXmlUtil()
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Field Detail
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OTHER
public static final java.lang.String OTHER
- See Also:
- Constant Field Values
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UNKNOWN
public static final java.lang.String UNKNOWN
- See Also:
- Constant Field Values
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SEQUENCE_SYMBOL_PATTERN
public static final java.util.regex.Pattern SEQUENCE_SYMBOL_PATTERN
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TAXOMONY_CODE_PATTERN
public static final java.util.regex.Pattern TAXOMONY_CODE_PATTERN
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LIT_REF_DOI_PATTERN
public static final java.util.regex.Pattern LIT_REF_DOI_PATTERN
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SEQUENCE_TYPES
public static final java.util.Set<java.lang.String> SEQUENCE_TYPES
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TAXONOMY_RANKS_LIST
public static final java.util.List<java.lang.String> TAXONOMY_RANKS_LIST
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TAXONOMY_RANKS_SET
public static final java.util.Set<java.lang.String> TAXONOMY_RANKS_SET
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ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT
public static final int ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT
- See Also:
- Constant Field Values
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VECTOR_PROPERTY_REF
public static final java.lang.String VECTOR_PROPERTY_REF
- See Also:
- Constant Field Values
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VECTOR_PROPERTY_TYPE
public static final java.lang.String VECTOR_PROPERTY_TYPE
- See Also:
- Constant Field Values
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UNIPROT_TAX_PROVIDER
public static final java.lang.String UNIPROT_TAX_PROVIDER
- See Also:
- Constant Field Values
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SEQ_TYPE_RNA
public static final java.lang.String SEQ_TYPE_RNA
- See Also:
- Constant Field Values
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SEQ_TYPE_DNA
public static final java.lang.String SEQ_TYPE_DNA
- See Also:
- Constant Field Values
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SEQ_TYPE_PROTEIN
public static final java.lang.String SEQ_TYPE_PROTEIN
- See Also:
- Constant Field Values
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