Package org.biojava.nbio.genome.uniprot
Class UniprotToFasta
- java.lang.Object
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- org.biojava.nbio.genome.uniprot.UniprotToFasta
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public class UniprotToFasta extends java.lang.Object
- Author:
- Scooter
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Constructor Summary
Constructors Constructor Description UniprotToFasta()
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static void
main(java.lang.String[] args)
void
process(java.lang.String uniprotDatFileName, java.lang.String fastaFileName)
Convert a Uniprot sequence file to a fasta file.
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Method Detail
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main
public static void main(java.lang.String[] args)
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process
public void process(java.lang.String uniprotDatFileName, java.lang.String fastaFileName) throws java.lang.Exception
Convert a Uniprot sequence file to a fasta file. Allows you to download all sequence data for a species and convert to fasta to be used in a blast database- Parameters:
uniprotDatFileName
-fastaFileName
-- Throws:
java.lang.Exception
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