Package org.biojava.nbio.structure.io
Class PDBBioAssemblyParser
- java.lang.Object
-
- org.biojava.nbio.structure.io.PDBBioAssemblyParser
-
public class PDBBioAssemblyParser extends java.lang.Object
Parses REMARK 350 records in a PDB file and creates transformations to construct the quaternary structure of a protein from an asymmetric unit- Author:
- Peter Rose, Andreas Prlic
-
-
Constructor Summary
Constructors Constructor Description PDBBioAssemblyParser()
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.Map<java.lang.Integer,BioAssemblyInfo>
getTransformationMap()
Returns a map of bioassembly transformationsvoid
pdb_REMARK_350_Handler(java.lang.String line)
Parses REMARK 350 line.
-
-
-
Method Detail
-
pdb_REMARK_350_Handler
public void pdb_REMARK_350_Handler(java.lang.String line)
Parses REMARK 350 line. See format description: http://www.wwpdb.org/documentation/format33/remarks2.html- Parameters:
line
-
-
getTransformationMap
public java.util.Map<java.lang.Integer,BioAssemblyInfo> getTransformationMap()
Returns a map of bioassembly transformations- Returns:
-
-