Class ClustalOmega

    • Method Detail

      • createInstance

        public static MsaInferrer createInstance​(java.lang.String path_to_prg)
                                          throws java.io.IOException
        Throws:
        java.io.IOException
      • getDefaultParameters

        public static java.lang.String getDefaultParameters()
      • infer

        public Msa infer​(java.util.List<MolecularSequence> seqs,
                         java.util.List<java.lang.String> opts)
                  throws java.io.IOException,
                         java.lang.InterruptedException
        Specified by:
        infer in class MsaInferrer
        Throws:
        java.io.IOException
        java.lang.InterruptedException
      • infer

        public Msa infer​(java.io.File path_to_input_seqs,
                         java.util.List<java.lang.String> opts)
                  throws java.io.IOException,
                         java.lang.InterruptedException
        Specified by:
        infer in class MsaInferrer
        Throws:
        java.io.IOException
        java.lang.InterruptedException