Package jebl.evolution.align.scores
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Interface Summary Interface Description ScoreMatrix -
Class Summary Class Description AminoAcidScores Blosum45 Blosum50 Blosum55 Blosum60 Blosum62 Blosum65 Blosum70 Blosum75 Blosum80 Blosum85 Blosum90 Hamming JukesCantor Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.NucleotideScores Pam100 Pam110 Pam120 Pam130 Pam140 Pam150 Pam160 Pam170 Pam180 Pam190 Pam200 Pam210 Pam220 Pam230 Pam240 Pam250 Scores Base class for all score matrices in the package.ScoresFactory SubstScoreMatrix