Constant Field Values
Contents
jebl.evolution.*
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jebl.evolution.io.FastaImporter Modifier and Type Constant Field Value public static final java.lang.String
descriptionPropertyName
"description"
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jebl.evolution.io.NexusExporter Modifier and Type Constant Field Value public static final int
MAX_ROW_LENGTH
60
public static final java.lang.String
treeNameAttributeKey
"name"
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jebl.evolution.sequences.AminoAcids Modifier and Type Constant Field Value public static final int
CANONICAL_STATE_COUNT
22
public static final java.lang.String
NAME
"amino acid"
public static final int
STATE_COUNT
29
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jebl.evolution.sequences.Codons Modifier and Type Constant Field Value public static final int
CANONICAL_STATE_COUNT
64
public static final java.lang.String
NAME
"codon"
public static final int
STATE_COUNT
66
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jebl.evolution.sequences.Nucleotides Modifier and Type Constant Field Value public static final int
CANONICAL_STATE_COUNT
4
public static final java.lang.String
NAME
"nucleotide"
public static final int
STATE_COUNT
17
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jebl.evolution.trees.CalculateSplitRates Modifier and Type Constant Field Value public final java.lang.String
INDICATOR
"changed"
public final java.lang.String
RATE
"rate"
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jebl.evolution.trees.ConsensusTreeBuilder<T extends Tree> Modifier and Type Constant Field Value public static final java.lang.String
DEFAULT_SUPPORT_ATTRIBUTE_NAME
"Consensus support(%)"
jebl.math.*
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jebl.math.MachineAccuracy Modifier and Type Constant Field Value public static final double
EPSILON
2.220446049250313E-16
public static final double
SQRT_EPSILON
1.4901161193847656E-8
public static final double
SQRT_SQRT_EPSILON
1.220703125E-4