Class QuantumPlaneCalculation

  • Direct Known Subclasses:
    NciCalculation

    public abstract class QuantumPlaneCalculation
    extends QuantumCalculation
    Allows modification of the planes prior to isosurface creation Used by Noncovalent Interaction Calculation for progressive readers
    • Constructor Detail

      • QuantumPlaneCalculation

        public QuantumPlaneCalculation()
    • Method Detail

      • setPlanes

        public abstract void setPlanes​(float[][] planes)
        Planes to use for holding raw file data. These will be managed by VolumeFileReader, but they will be needed by the calculation.
        Parameters:
        planes - a set of four planes that shifts as the progressive Marching Cubes process moves along
      • calcPlane

        public abstract void calcPlane​(int x,
                                       float[] plane)
        Fill this plane with data based on the current set of raw data planes. Really there are just two planes that are managed by VolumeFileReader and are interchanged as the Marching Cubes process moves along.
        Parameters:
        x -
        plane -
      • process

        public abstract float process​(int vA,
                                      int vB,
                                      float f)
        Data mapping function to radically increase speed and reduce memory requirements of mapping data when the mapping comes from the same data set as the points, so isosurface creation and data mapping can be carried out both in the first (and only) pass.
        Parameters:
        vA - absolute pointer to vertex A on grid
        vB - absolute pointer to vertex B on grid
        f - fractional way from A to B
        Returns:
        computed value
      • getNoValue

        public abstract float getNoValue()
        Get that value that represents "no value" so that it can be disregarded in terms of recording and reporting the min/max/mean.
        Returns:
        NO_VALUE
      • getPlane

        public abstract void getPlane​(int x,
                                      float[] yzPlane)