Uses of Interface
net.imglib2.RealLocalizable
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Uses of RealLocalizable in net.imglib2
Classes in net.imglib2 with type parameters of type RealLocalizable Modifier and Type Class Description static class
KDTree.DimComparator<L extends RealLocalizable>
Compare RealLocalizables by comparing their coordinates in dimension d.Subinterfaces of RealLocalizable in net.imglib2 Modifier and Type Interface Description interface
Cursor<T>
A Cursor iterates over a set of Localizable elements, for example the image values at the (integer) pixel positions of an image.interface
Localizable
TheLocalizable
interface can localize itself in an n-dimensional discrete space.interface
RandomAccess<T>
interface
RealCursor<T>
A RealCursor iterates over a set of RealLocalizable elements, for example intensity values sampled at a finite set of arbitrary real positions.interface
RealRandomAccess<T>
Classes in net.imglib2 that implement RealLocalizable Modifier and Type Class Description class
AbstractCursor<T>
Abstract implementation ofCursor
.class
AbstractCursorInt<T>
Abstract implementation ofCursor
.class
AbstractLocalizable
An abstract class that implements theLocalizable
interface using a long[] array to maintain position.class
AbstractLocalizableInt
An abstract class that implements theLocalizable
interface using an int[] array to maintain position.class
AbstractLocalizingCursor<T>
Abstract base class for localizingCursor
s.class
AbstractLocalizingCursorInt<T>
Abstract base class for localizingCursor
s.class
AbstractRealLocalizable
An abstract class that implements theRealLocalizable
interface using an array of doubles to maintain positionclass
KDTree.KDTreeCursor
protected static class
KDTree.SamplerNode<T>
A KDTreeNode that stores it's value as a Sampler.protected static class
KDTree.ValueNode<T>
A KDTreeNode that stores it's value as a reference.class
KDTreeNode<T>
Abstract base class for nodes in a KDTree.class
Point
A Point is a position in Euclidean space specified in integer coordinates.class
PointSampleList.PointSampleListCursor
class
RealPoint
A point is a location in EuclideanSpace.class
RealPointSampleList.RealPointSampleListCursor
Methods in net.imglib2 with type parameters of type RealLocalizable Modifier and Type Method Description protected <L extends RealLocalizable>
KDTree.ValueNode<T>KDTree. makeNode(java.util.List<L> elements, int i, int j, int d)
protected <L extends RealLocalizable>
KDTree.ValueNode<T>KDTree. makeNode(java.util.List<L> positions, int i, int j, int d, java.util.List<T> values, int[] permutation)
Construct the tree by recursively adding nodes.protected <L extends RealLocalizable>
KDTree.ValueNode<T>KDTree. makeNode(java.util.ListIterator<L> first, java.util.ListIterator<L> last, int d)
protected <L extends RealLocalizable>
KDTree.ValueNode<T>KDTree. makeNode(java.util.ListIterator<L> first, java.util.ListIterator<L> last, int d, java.util.List<T> values, int[] permutation)
Construct the tree by recursively adding nodes.protected static <L extends RealLocalizable>
booleanKDTree. verifyDimensions(java.util.List<L> positions, int n)
Check whether all positions in the positions list have dimension n.Methods in net.imglib2 with parameters of type RealLocalizable Modifier and Type Method Description void
RealPoint. move(RealLocalizable localizable)
void
RealPositionable. move(RealLocalizable distance)
Move the element relative to its current location using aRealLocalizable
as distance vector.void
RealPoint. setPosition(RealLocalizable localizable)
void
RealPositionable. setPosition(RealLocalizable position)
Place the element at the same location as a givenRealLocalizable
double
KDTreeNode. squDistanceTo(RealLocalizable p)
Compute the squared distance from p to this node.Constructors in net.imglib2 with parameters of type RealLocalizable Constructor Description KDTreeNode(RealLocalizable position, int dimension, KDTreeNode<T> left, KDTreeNode<T> right)
RealPoint(RealLocalizable localizable)
Create a point using the position and dimensionality of aRealLocalizable
SamplerNode(Sampler<T> sampler, RealLocalizable position, int dimension, KDTree.SamplerNode<T> left, KDTree.SamplerNode<T> right)
ValueNode(T value, RealLocalizable position, int dimension, KDTree.ValueNode<T> left, KDTree.ValueNode<T> right)
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Uses of RealLocalizable in net.imglib2.converter
Classes in net.imglib2.converter that implement RealLocalizable Modifier and Type Class Description class
AbstractConvertedCursor<A,B>
TODOclass
AbstractConvertedRandomAccess<A,B>
TODOclass
AbstractConvertedRealRandomAccess<A,B>
TODOMethods in net.imglib2.converter with parameters of type RealLocalizable Modifier and Type Method Description void
AbstractConvertedRealRandomAccess. move(RealLocalizable localizable)
void
AbstractConvertedRealRandomAccess. setPosition(RealLocalizable localizable)
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Uses of RealLocalizable in net.imglib2.converter.read
Classes in net.imglib2.converter.read that implement RealLocalizable Modifier and Type Class Description class
ConvertedCursor<A,B extends Type<B>>
TODOclass
ConvertedRandomAccess<A,B extends Type<B>>
TODOclass
ConvertedRealRandomAccess<A,B extends Type<B>>
TODO -
Uses of RealLocalizable in net.imglib2.converter.readwrite
Classes in net.imglib2.converter.readwrite that implement RealLocalizable Modifier and Type Class Description class
WriteConvertedCursor<A,B>
TODOclass
WriteConvertedRandomAccess<A,B>
TODO -
Uses of RealLocalizable in net.imglib2.display.projector
Classes in net.imglib2.display.projector that implement RealLocalizable Modifier and Type Class Description class
AbstractProjector2D
Base class for 2D projectors.class
IterableIntervalProjector2D<A,B>
A general 2D Projector that uses two dimensions as input to create the 2D result.class
RandomAccessibleProjector2D<A,B>
A general 2D Projector that uses two dimensions as input to create the 2D result. -
Uses of RealLocalizable in net.imglib2.display.projector.composite
Classes in net.imglib2.display.projector.composite that implement RealLocalizable Modifier and Type Class Description class
CompositeXYProjector<A>
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).class
CompositeXYRandomAccessibleProjector<A>
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels). -
Uses of RealLocalizable in net.imglib2.display.projector.sampler
Classes in net.imglib2.display.projector.sampler that implement RealLocalizable Modifier and Type Class Description class
SamplingProjector2D<A,B>
A general 2D Projector that uses three dimensions as input to create the 2D result. -
Uses of RealLocalizable in net.imglib2.display.projector.specialized
Classes in net.imglib2.display.projector.specialized that implement RealLocalizable Modifier and Type Class Description class
ArrayImgXYByteProjector<A extends GenericByteType<A>>
Fast implementation of aAbstractProjector2D
that selects a 2D data plain from an ByteType ArrayImg.class
ArrayImgXYShortProjector<A extends GenericShortType<A>>
Fast implementation of aAbstractProjector2D
that selects a 2D data plain from an ShortType ArrayImg.class
PlanarImgXYByteProjector<A extends GenericByteType<A>>
Fast implementation of aAbstractProjector2D
that selects a 2D data plain from a ByteType PlanarImg.class
PlanarImgXYShortProjector<A extends GenericShortType<A>>
Fast implementation of aAbstractProjector2D
that selects a 2D data plain from an ShortType PlanarImg. -
Uses of RealLocalizable in net.imglib2.display.projector.volatiles
Classes in net.imglib2.display.projector.volatiles that implement RealLocalizable Modifier and Type Class Description class
Volatile2DRandomAccessibleProjector<T,A extends Volatile<T>,B>
IterableIntervalProjector2D
forVolatile
input. -
Uses of RealLocalizable in net.imglib2.img.array
Classes in net.imglib2.img.array that implement RealLocalizable Modifier and Type Class Description class
AbstractArrayCursor<T extends NativeType<T>>
class
AbstractArrayLocalizingCursor<T extends NativeType<T>>
class
ArrayCursor<T extends NativeType<T>>
class
ArrayLocalizingCursor<T extends NativeType<T>>
class
ArrayLocalizingSubIntervalCursor<T extends NativeType<T>>
LocalizingAbstractArrayLocalizingCursor
on anArrayImg
.class
ArrayRandomAccess<T extends NativeType<T>>
RandomAccess
on anArrayImg
.class
ArraySubIntervalCursor<T extends NativeType<T>>
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Uses of RealLocalizable in net.imglib2.img.cell
Classes in net.imglib2.img.cell that implement RealLocalizable Modifier and Type Class Description class
CellCursor<T extends NativeType<T>,C extends Cell<?>>
Cursor
on aAbstractCellImg
.class
CellLocalizingCursor<T extends NativeType<T>,C extends Cell<?>>
LocalizingCursor
on aAbstractCellImg
.class
CellRandomAccess<T extends NativeType<T>,C extends Cell<?>>
RandomAccess
on aAbstractCellImg
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Uses of RealLocalizable in net.imglib2.img.list
Classes in net.imglib2.img.list that implement RealLocalizable Modifier and Type Class Description class
AbstractLongListImg.LongListCursor
class
AbstractLongListImg.LongListLocalizingCursor
class
AbstractLongListImg.LongListRandomAccess
class
ListCursor<T>
class
ListLocalizingCursor<T>
class
ListRandomAccess<T>
RandomAccess
on aListImg
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Uses of RealLocalizable in net.imglib2.img.planar
Classes in net.imglib2.img.planar that implement RealLocalizable Modifier and Type Class Description class
PlanarCursor<T extends NativeType<T>>
Basic Iterator forPlanarContainers
class
PlanarCursor1D<T extends NativeType<T>>
Basic Iterator for 1dPlanarContainers
class
PlanarCursor2D<T extends NativeType<T>>
Basic Iterator for 2dPlanarContainers
class
PlanarLocalizingCursor<T extends NativeType<T>>
Localizing Iterator for aPlanarContainers
class
PlanarLocalizingCursor1D<T extends NativeType<T>>
TODOclass
PlanarLocalizingCursor2D<T extends NativeType<T>>
TODOclass
PlanarPlaneSubsetCursor<T extends NativeType<T>>
Basic Iterator forPlanarContainers
class
PlanarPlaneSubsetLocalizingCursor<T extends NativeType<T>>
Cursor optimized for one plane in an PlanarImg.class
PlanarRandomAccess<T extends NativeType<T>>
RandomAccess
on aPlanarImg
.class
PlanarRandomAccess1D<T extends NativeType<T>>
RandomAccess
for a 1-dimensionalPlanarImg
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Uses of RealLocalizable in net.imglib2.img.sparse
Classes in net.imglib2.img.sparse that implement RealLocalizable Modifier and Type Class Description class
NtreeCursor<T extends NativeType<T>>
class
NtreeRandomAccess<T extends NativeType<T>>
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Uses of RealLocalizable in net.imglib2.interpolation.neighborsearch
Classes in net.imglib2.interpolation.neighborsearch that implement RealLocalizable Modifier and Type Class Description class
InverseDistanceWeightingInterpolator<T extends RealType<T>>
RealRandomAccess
to aKNearestNeighborSearch
whose sample value is generated by weighting the k nearest neighbors of a query real coordinate by their inverse distance to an arbitrary power p.class
NearestNeighborSearchInterpolator<T>
Nearest-neighbor interpolation implemented byNearestNeighborSearch
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Uses of RealLocalizable in net.imglib2.interpolation.randomaccess
Classes in net.imglib2.interpolation.randomaccess that implement RealLocalizable Modifier and Type Class Description class
FloorInterpolator<T>
RealRandomAccess
to aRandomAccess
by nearest floor interpolation (i.e., the value is sampled at floor(x)).class
LanczosInterpolator<T extends RealType<T>>
n-dimensional double-based Lanczos Interpolationclass
NearestNeighborInterpolator<T>
RealRandomAccess
to aRandomAccess
by nearest neighbor interpolation.class
NLinearInterpolator<T extends NumericType<T>>
Performs multi-linear interpolation.class
NLinearInterpolator1D<T extends NumericType<T>>
class
NLinearInterpolator2D<T extends NumericType<T>>
class
NLinearInterpolator3D<T extends NumericType<T>>
class
NLinearInterpolatorARGB
N-linear interpolator for ARGB values with overflow check. -
Uses of RealLocalizable in net.imglib2.iterator
Classes in net.imglib2.iterator that implement RealLocalizable Modifier and Type Class Description class
IntervalIterator
Use this class to iterate a virtualInterval
in flat order, that is: row by row, plane by plane, cube by cube, ...class
LocalizingIntervalIterator
Use this class to iterate a virtualInterval
in flat order, that is: row by row, plane by plane, cube by cube, ...class
LocalizingZeroMinIntervalIterator
Use this class to iterate a virtual rectangularInterval
whose min coordinates are at 0n in flat order, that is: row by row, plane by plane, cube by cube, ...class
OffsetableIntervalIterator
AIntervalIterator
that has an adjustable offsetclass
OffsetableLocalizingIntervalIterator
ALocalizingIntervalIterator
that has an adjustable offsetclass
ZeroMinIntervalIterator
Use this class to iterate a virtual rectangularInterval
whose min coordinates are at 0n in flat order, that is: row by row, plane by plane, cube by cube, ... -
Uses of RealLocalizable in net.imglib2.neighborsearch
Methods in net.imglib2.neighborsearch that return RealLocalizable Modifier and Type Method Description RealLocalizable
KNearestNeighborSearch. getPosition(int i)
Access the position of the ith nearest neighbor, ordered by square Euclidean distance.RealLocalizable
KNearestNeighborSearchOnIterableRealInterval. getPosition()
RealLocalizable
KNearestNeighborSearchOnIterableRealInterval. getPosition(int i)
RealLocalizable
KNearestNeighborSearchOnKDTree. getPosition()
RealLocalizable
KNearestNeighborSearchOnKDTree. getPosition(int i)
RealLocalizable
NearestNeighborSearch. getPosition()
Access the position of the nearest neighbor, ordered by square Euclidean distance.RealLocalizable
NearestNeighborSearchOnIterableRealInterval. getPosition()
RealLocalizable
NearestNeighborSearchOnKDTree. getPosition()
RealLocalizable
RadiusNeighborSearch. getPosition(int i)
Access the position of the ith neighbor within radius.RealLocalizable
RadiusNeighborSearchOnKDTree. getPosition(int i)
Methods in net.imglib2.neighborsearch with parameters of type RealLocalizable Modifier and Type Method Description void
KNearestNeighborSearch. search(RealLocalizable reference)
Perform k-nearest-neighbor search for a reference coordinate.void
KNearestNeighborSearchOnIterableRealInterval. search(RealLocalizable reference)
void
KNearestNeighborSearchOnKDTree. search(RealLocalizable reference)
void
NearestNeighborSearch. search(RealLocalizable reference)
Perform nearest-neighbor search for a reference coordinate.void
NearestNeighborSearchOnIterableRealInterval. search(RealLocalizable reference)
void
NearestNeighborSearchOnKDTree. search(RealLocalizable p)
void
RadiusNeighborSearch. search(RealLocalizable reference, double radius, boolean sortResults)
Perform neighbor search within a radius about a reference coordinate.void
RadiusNeighborSearchOnKDTree. search(RealLocalizable reference, double radius, boolean sortResults)
protected double
KNearestNeighborSearchOnIterableRealInterval. squareDistance(RealLocalizable query)
Calculate the square Euclidean distance of a query location to the location stored in referenceLocation.protected double
NearestNeighborSearchOnIterableRealInterval. squareDistance(RealLocalizable query)
Calculate the square Euclidean distance of a query location to the location stored in referenceLocation. -
Uses of RealLocalizable in net.imglib2.outofbounds
Subinterfaces of RealLocalizable in net.imglib2.outofbounds Modifier and Type Interface Description interface
OutOfBounds<T>
interface
RealOutOfBounds<T>
Classes in net.imglib2.outofbounds that implement RealLocalizable Modifier and Type Class Description class
AbstractOutOfBoundsMirror<T>
Abstract implementation of shared functions for mirroring out of bounds.class
AbstractOutOfBoundsValue<T extends Type<T>>
class
OutOfBoundsBorder<T>
Repeat the boundary pixels.class
OutOfBoundsConstantValue<T extends Type<T>>
class
OutOfBoundsMirrorDoubleBoundary<T>
Coordinates out of image bounds are mirrored between boundary coordinates.class
OutOfBoundsMirrorExpWindowing<T extends NumericType<T>>
Adds a exponential windowing to the mirrored content outside the Interval boundariesclass
OutOfBoundsMirrorSingleBoundary<T>
Coordinates out of image bounds are mirrored at boundary coordinates.class
OutOfBoundsPeriodic<T>
Coordinates out of image bounds are periodically repeated.class
OutOfBoundsRandomValue<T extends RealType<T>>
Return a random value in a certain range when outside of the Intervalclass
RealOutOfBoundsRealRandomAccess<T>
Methods in net.imglib2.outofbounds with parameters of type RealLocalizable Modifier and Type Method Description void
RealOutOfBoundsRealRandomAccess. move(RealLocalizable localizable)
void
RealOutOfBoundsRealRandomAccess. setPosition(RealLocalizable localizable)
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Uses of RealLocalizable in net.imglib2.position.transform
Classes in net.imglib2.position.transform that implement RealLocalizable Modifier and Type Class Description class
AbstractPositionableTransform<LocalizablePositionable extends Localizable & Positionable>
ARealPositionable
that drives aPositionable
to somehow derived discrete coordinates.class
Floor<LocalizablePositionable extends Localizable & Positionable>
ARealPositionable
that drives aPositionable
to its floor discrete coordinates.class
FloorOffset<LocalizablePositionable extends Localizable & Positionable>
ARealPositionable
that drives aPositionable
to its floor discrete coordinates plus a discrete offset vector.class
Round<LocalizablePositionable extends Localizable & Positionable>
ARealPositionable
that drives aPositionable
to its round discrete coordinates:f = r < 0 ? (long)( r - 0.5 ) : (long)( r + 0.5 )
Methods in net.imglib2.position.transform with parameters of type RealLocalizable Modifier and Type Method Description protected void
FloorOffset. f(RealLocalizable r, long[] f)
static void
Floor. floor(RealLocalizable r, long[] f)
void
Floor. move(RealLocalizable localizable)
void
FloorOffset. move(RealLocalizable localizable)
void
Round. move(RealLocalizable localizable)
static void
Round. round(RealLocalizable r, long[] f)
void
Floor. setPosition(RealLocalizable localizable)
void
FloorOffset. setPosition(RealLocalizable localizable)
void
Round. setPosition(RealLocalizable localizable)
Constructors in net.imglib2.position.transform with parameters of type RealLocalizable Constructor Description Floor(RealLocalizable origin, LocalizablePositionable target)
FloorOffset(RealLocalizable origin, LocalizablePositionable target, long[] offset)
FloorOffset(RealLocalizable origin, LocalizablePositionable target, Localizable offset)
Round(RealLocalizable origin, LocalizablePositionable target)
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Uses of RealLocalizable in net.imglib2.util
Methods in net.imglib2.util with parameters of type RealLocalizable Modifier and Type Method Description static boolean
Intervals. contains(RealInterval containing, RealLocalizable contained)
Test whether thecontaining
interval contains thecontained
point.static double
Util. distance(RealLocalizable position1, RealLocalizable position2)
static java.lang.String
Util. printCoordinates(RealLocalizable localizable)
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Uses of RealLocalizable in net.imglib2.view
Classes in net.imglib2.view that implement RealLocalizable Modifier and Type Class Description class
FullSourceMapMixedRandomAccess<T>
class
FullSourceMapSlicingRandomAccess<T>
class
HyperSlice.HyperSliceRandomAccess
class
HyperSlicesView.HyperSlicesViewRandomAccess
class
MixedRandomAccess<T>
class
RandomAccessibleIntervalCursor<T>
ACursor
that iterates anyRandomAccessibleInterval
by moving aRandomAccess
in flat iteration order.protected class
RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
class
RandomAccessiblePair.RandomAccess
class
SlicingRandomAccess<T>
static class
StackView.DefaultRA<T>
ARandomAccess
on aStackView
.static class
StackView.MoveAllSlicesRA<T>
ARandomAccess
on aStackView
.class
SubsampleView.SubsampleRandomAccess
class
TransformRandomAccess<T>
class
TranslationRandomAccess<T>
TODO -
Uses of RealLocalizable in net.imglib2.view.composite
Classes in net.imglib2.view.composite that implement RealLocalizable Modifier and Type Class Description class
CompositeView.CompositeRandomAccess
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Uses of RealLocalizable in net.imglib2.view.iteration
Classes in net.imglib2.view.iteration that implement RealLocalizable Modifier and Type Class Description class
SlicingCursor<T>
Wrap a cursor that runs on a hyperslice and apply coordinate transform on localize calls.
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