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A
- a - Variable in class net.imglib2.type.numeric.ARGBDoubleType
- a - Variable in class net.imglib2.util.ValuePair
- a - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- A - net.imglib2.converter.ChannelARGBConverter.Channel
- A - net.imglib2.type.label.BasePairBitType.Base
- AbstractARGBDoubleType<T extends AbstractARGBDoubleType<T>> - Class in net.imglib2.type.numeric
- AbstractARGBDoubleType() - Constructor for class net.imglib2.type.numeric.AbstractARGBDoubleType
- AbstractArrayColorTable<T> - Class in net.imglib2.display
-
Abstract superclass for array-based color lookup tables.
- AbstractArrayColorTable(T...) - Constructor for class net.imglib2.display.AbstractArrayColorTable
-
Initializes a color table with the given table values.
- AbstractArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
- AbstractArrayCursor(AbstractArrayCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
-
TODO Javadoc
- AbstractArrayCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
-
TODO Javadoc
- AbstractArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
- AbstractArrayLocalizingCursor(AbstractArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
TODO Javadoc
- AbstractArrayLocalizingCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
TODO Javadoc
- AbstractBit64Type<T extends AbstractBit64Type<T>> - Class in net.imglib2.type
-
A
Type
with arbitrary bit depth up to maximum 64 bits. - AbstractBit64Type(int) - Constructor for class net.imglib2.type.AbstractBit64Type
- AbstractBit64Type(long, int) - Constructor for class net.imglib2.type.AbstractBit64Type
- AbstractBit64Type(LongAccess, int) - Constructor for class net.imglib2.type.AbstractBit64Type
- AbstractBit64Type(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBit64Type
- AbstractBitType<T extends AbstractBitType<T>> - Class in net.imglib2.type
-
Provides basic infrastructure to implement Types based on single bits stored in a LongAccess
- AbstractBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBitType
- AbstractByteArray<A extends AbstractByteArray<A>> - Class in net.imglib2.img.basictypeaccess.array
- AbstractByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
- AbstractByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
- AbstractCellImg<T extends NativeType<T>,A,C extends Cell<A>,I extends RandomAccessible<C> & IterableInterval<C>> - Class in net.imglib2.img.cell
-
Abstract superclass for
Img
types that divide their underlying data into cells. - AbstractCellImg(CellGrid, I, Fraction) - Constructor for class net.imglib2.img.cell.AbstractCellImg
- AbstractCellImg.CellImgSampler<C> - Interface in net.imglib2.img.cell
-
This interface is implemented by all samplers on the
AbstractCellImg
. - AbstractCharArray<A extends AbstractCharArray<A>> - Class in net.imglib2.img.basictypeaccess.array
- AbstractCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
- AbstractCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
- AbstractComplexType<T extends AbstractComplexType<T>> - Class in net.imglib2.type.numeric.complex
-
TODO
- AbstractComplexType() - Constructor for class net.imglib2.type.numeric.complex.AbstractComplexType
- AbstractComposite<T> - Class in net.imglib2.view.composite
-
Abstract implementation of
Composite
. - AbstractComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.AbstractComposite
- AbstractConvertedCursor<A,B> - Class in net.imglib2.converter
-
TODO
- AbstractConvertedCursor(Cursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedCursor
- AbstractConvertedIterableInterval<A,B> - Class in net.imglib2.converter
-
TODO
- AbstractConvertedIterableInterval(IterableInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableInterval
- AbstractConvertedIterableRandomAccessibleInterval<A,B,S extends RandomAccessible<A> & IterableInterval<A>> - Class in net.imglib2.converter
-
TODO
- AbstractConvertedIterableRandomAccessibleInterval(S) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- AbstractConvertedRandomAccess<A,B> - Class in net.imglib2.converter
-
TODO
- AbstractConvertedRandomAccess(RandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccess
- AbstractConvertedRandomAccessible<A,B> - Class in net.imglib2.converter
-
TODO
- AbstractConvertedRandomAccessible(RandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessible
- AbstractConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter
- AbstractConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
- AbstractConvertedRealRandomAccess<A,B> - Class in net.imglib2.converter
-
TODO
- AbstractConvertedRealRandomAccess(RealRandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccess
- AbstractConvertedRealRandomAccessible<A,B> - Class in net.imglib2.converter
-
TODO
- AbstractConvertedRealRandomAccessible(RealRandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccessible
- AbstractCursor<T> - Class in net.imglib2
-
Abstract implementation of
Cursor
. - AbstractCursor(int) - Constructor for class net.imglib2.AbstractCursor
- AbstractCursorInt<T> - Class in net.imglib2
-
Abstract implementation of
Cursor
. - AbstractCursorInt(int) - Constructor for class net.imglib2.AbstractCursorInt
- AbstractDoubleArray<A extends AbstractDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.array
- AbstractDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
- AbstractDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
- AbstractEuclideanSpace - Class in net.imglib2
-
Superclass of abstract EuclideanSpace implementations (accessors, containers, etc).
- AbstractEuclideanSpace(int) - Constructor for class net.imglib2.AbstractEuclideanSpace
- AbstractFloatArray<A extends AbstractFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.array
- AbstractFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
- AbstractFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
- AbstractImg<T> - Class in net.imglib2.img
-
TODO
- AbstractImg(long[]) - Constructor for class net.imglib2.img.AbstractImg
- AbstractIntArray<A extends AbstractIntArray<A>> - Class in net.imglib2.img.basictypeaccess.array
- AbstractIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
- AbstractIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
- AbstractIntegerBitType<T extends AbstractIntegerBitType<T>> - Class in net.imglib2.type.numeric.integer
-
The performance of this type is traded off for the gain in memory storage.
- AbstractIntegerBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- AbstractIntegerType<T extends AbstractIntegerType<T>> - Class in net.imglib2.type.numeric.integer
-
TODO
- AbstractIntegerType() - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerType
- AbstractInterval - Class in net.imglib2
-
Implementation of the
Interval
interface. - AbstractInterval(int) - Constructor for class net.imglib2.AbstractInterval
-
Creates an n-dimensional
AbstractInterval
with min and max = 0n. - AbstractInterval(long[]) - Constructor for class net.imglib2.AbstractInterval
-
Creates an Interval with the boundaries [0, dimensions-1]
- AbstractInterval(long[], long[]) - Constructor for class net.imglib2.AbstractInterval
-
Creates an Interval with the boundaries [min, max] (both including)
- AbstractInterval(Dimensions) - Constructor for class net.imglib2.AbstractInterval
-
Creates an Interval with the boundaries [0, dimensions-1]
- AbstractInterval(Interval) - Constructor for class net.imglib2.AbstractInterval
-
Creates a
AbstractInterval
from anotherInterval
- AbstractLinearRange - Class in net.imglib2.display
- AbstractLinearRange() - Constructor for class net.imglib2.display.AbstractLinearRange
- AbstractLinearRange(double, double) - Constructor for class net.imglib2.display.AbstractLinearRange
- AbstractListImg<T> - Class in net.imglib2.img.list
-
Abstract base class for
Img
that store pixels in a single linear array (anArrayList
or similar).In principle, the number of entities stored is limited toInteger.MAX_VALUE
. - AbstractListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractListImg
- AbstractLocalizable - Class in net.imglib2
-
An abstract class that implements the
Localizable
interface using a long[] array to maintain position. - AbstractLocalizable(int) - Constructor for class net.imglib2.AbstractLocalizable
- AbstractLocalizable(long[]) - Constructor for class net.imglib2.AbstractLocalizable
-
Protected constructor that re-uses the passed position array.
- AbstractLocalizableInt - Class in net.imglib2
-
An abstract class that implements the
Localizable
interface using an int[] array to maintain position. - AbstractLocalizableInt(int) - Constructor for class net.imglib2.AbstractLocalizableInt
- AbstractLocalizableInt(int[]) - Constructor for class net.imglib2.AbstractLocalizableInt
-
Protected constructor that re-uses the passed position array.
- AbstractLocalizingCursor<T> - Class in net.imglib2
-
Abstract base class for localizing
Cursor
s. - AbstractLocalizingCursor(int) - Constructor for class net.imglib2.AbstractLocalizingCursor
- AbstractLocalizingCursorInt<T> - Class in net.imglib2
-
Abstract base class for localizing
Cursor
s. - AbstractLocalizingCursorInt(int) - Constructor for class net.imglib2.AbstractLocalizingCursorInt
- AbstractLongArray<A extends AbstractLongArray<A>> - Class in net.imglib2.img.basictypeaccess.array
- AbstractLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
- AbstractLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
- AbstractLongListImg<T> - Class in net.imglib2.img.list
-
Abstract base class for
Img
that store pixels in a single linear list addressed by a long. - AbstractLongListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractLongListImg
- AbstractLongListImg.LongListCursor - Class in net.imglib2.img.list
- AbstractLongListImg.LongListLocalizingCursor - Class in net.imglib2.img.list
- AbstractLongListImg.LongListRandomAccess - Class in net.imglib2.img.list
- AbstractMixedTransform - Class in net.imglib2.transform.integer
-
TODO
- AbstractMixedTransform(int) - Constructor for class net.imglib2.transform.integer.AbstractMixedTransform
- AbstractNativeImg<T extends NativeType<T>,A> - Class in net.imglib2.img
-
TODO
- AbstractNativeImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeImg
- AbstractNativeType<T extends AbstractNativeType<T>> - Class in net.imglib2.type
-
TODO
- AbstractNativeType() - Constructor for class net.imglib2.type.AbstractNativeType
- AbstractNumericComposite<T extends NumericType<T>,C extends AbstractNumericComposite<T,C>> - Class in net.imglib2.view.composite
-
Abstract base class for a vector of
NumericType
scalars. - AbstractNumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.AbstractNumericComposite
- AbstractOutOfBoundsMirror<T> - Class in net.imglib2.outofbounds
-
Abstract implementation of shared functions for mirroring out of bounds.
- AbstractOutOfBoundsMirror(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- AbstractOutOfBoundsMirror(AbstractOutOfBoundsMirror<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- AbstractOutOfBoundsValue<T extends Type<T>> - Class in net.imglib2.outofbounds
- AbstractOutOfBoundsValue(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- AbstractOutOfBoundsValue(AbstractOutOfBoundsValue<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- AbstractPermutationTransform - Class in net.imglib2.transform.integer.permutation
-
Bijective integer transform mapping between integer coordinates in [0,n-1].
- AbstractPermutationTransform(int[]) - Constructor for class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- AbstractPositionableTransform<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
-
A
RealPositionable
that drives aPositionable
to somehow derived discrete coordinates. - AbstractPositionableTransform(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.AbstractPositionableTransform
- AbstractProjector2D - Class in net.imglib2.display.projector
-
Base class for 2D projectors.
- AbstractProjector2D(int) - Constructor for class net.imglib2.display.projector.AbstractProjector2D
-
initializes a reference point with the specified number of dimensions.
- AbstractRealInterval - Class in net.imglib2
-
Implementation of the
RealInterval
interface. - AbstractRealInterval(double[], double[]) - Constructor for class net.imglib2.AbstractRealInterval
-
Creates a new
AbstractRealInterval
from min and max coordinates - AbstractRealInterval(int) - Constructor for class net.imglib2.AbstractRealInterval
-
Creates an n-dimensional
AbstractInterval
with min and max = 0n. - AbstractRealInterval(RealInterval) - Constructor for class net.imglib2.AbstractRealInterval
-
Creates a new
AbstractRealInterval
using an existingRealInterval
- AbstractRealLocalizable - Class in net.imglib2
-
An abstract class that implements the
RealLocalizable
interface using an array of doubles to maintain position - AbstractRealLocalizable(double[]) - Constructor for class net.imglib2.AbstractRealLocalizable
-
Protected constructor that re-uses the passed position array.
- AbstractRealLocalizable(int) - Constructor for class net.imglib2.AbstractRealLocalizable
- AbstractRealType<T extends AbstractRealType<T>> - Class in net.imglib2.type.numeric.real
-
TODO
- AbstractRealType() - Constructor for class net.imglib2.type.numeric.real.AbstractRealType
- AbstractShearTransform - Class in net.imglib2.transform.integer.shear
-
Most simple case of a shear transform that just implements for a integer valued coordinate: coordinate[ shearDimension ] += coordinate[ referenceDimension ] (forward) coordinate[ shearDimension ] -= coordinate[ referenceDimension ] (backward) This abstract class holds the inverse and implements applyInverse in terms of inverse.apply
- AbstractShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
- AbstractShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
- AbstractShortArray<A extends AbstractShortArray<A>> - Class in net.imglib2.img.basictypeaccess.array
- AbstractShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
- AbstractShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
- AbstractVolatileByteArray<A extends AbstractVolatileByteArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
- AbstractVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
- AbstractVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
- AbstractVolatileCharArray<A extends AbstractVolatileCharArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
- AbstractVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
- AbstractVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
- AbstractVolatileDoubleArray<A extends AbstractVolatileDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
- AbstractVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
- AbstractVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
- AbstractVolatileFloatArray<A extends AbstractVolatileFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
- AbstractVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
- AbstractVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
- AbstractVolatileIntArray<A extends AbstractVolatileIntArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
- AbstractVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
- AbstractVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
- AbstractVolatileLongArray<A extends AbstractVolatileLongArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
- AbstractVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
- AbstractVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
- AbstractVolatileNumericType<N extends NumericType<N>,T extends AbstractVolatileNumericType<N,T>> - Class in net.imglib2.type.volatiles
-
Abstract base class for
VolatileNumericType
s that wrap aNumericType
that is either VALID or INVALID. - AbstractVolatileNumericType(N) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
- AbstractVolatileNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
- AbstractVolatileRealType<R extends RealType<R>,T extends AbstractVolatileRealType<R,T>> - Class in net.imglib2.type.volatiles
-
Abstract base class for
VolatileRealType
s that wrapRealType
. - AbstractVolatileRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileRealType
- AbstractVolatileShortArray<A extends AbstractVolatileShortArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
- AbstractVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
- AbstractVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
- AbstractWrappedInterval<I extends Interval> - Class in net.imglib2
-
Convenient base class for
IterableIntervals
,RandomAccessibleIntervals
, etc that forward theInterval
interface to, for example, their source accessible. - AbstractWrappedInterval(I) - Constructor for class net.imglib2.AbstractWrappedInterval
- AbstractWrappedRealInterval<I extends RealInterval> - Class in net.imglib2
-
Convenient base class for
IterableRealIntervals
, etc that forward theRealInterval
interface to, for example, their source accessible. - AbstractWrappedRealInterval(I) - Constructor for class net.imglib2.AbstractWrappedRealInterval
- accA - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- accB - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- accessAxes - Variable in class net.imglib2.view.HyperSlicesView
- accG - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- accR - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- accumulate(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- accumulator - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
- add(double) - Method in class net.imglib2.util.RealSum
-
Add an element to the sum.
- add(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set C = A + B.
- add(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set c = a + b.
- add(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
- add(Point, T) - Method in class net.imglib2.PointSampleList
- add(RealPoint, T) - Method in class net.imglib2.RealPointSampleList
- add(BitType) - Method in class net.imglib2.type.logic.BitType
- add(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
- add(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- add(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
Relies on
BigInteger.add(BigInteger)
. - add(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- add(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- add(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- add(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- add(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- add(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
- add(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- add(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- add(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- add(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- add(T) - Method in interface net.imglib2.type.operators.Add
- add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- Add<T> - Interface in net.imglib2.type.operators
- addData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
-
Counts additional data contained in a given iterable collection.
- addData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
-
Counts additional data contained in a given iterable collection.
- addData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
-
Counts additional data contained in a given iterable collection.
- addDimension(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
-
Create view which adds a dimension to the source
RandomAccessible
. - addDimension(RandomAccessibleInterval<T>, long, long) - Static method in class net.imglib2.view.Views
-
Create view which adds a dimension to the source
RandomAccessibleInterval
. - alpha - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- alpha(int) - Static method in class net.imglib2.type.numeric.ARGBType
- ALPHA - Static variable in interface net.imglib2.display.ColorTable
- and(boolean) - Method in class net.imglib2.type.logic.BoolType
- and(BitType) - Method in class net.imglib2.type.logic.BitType
- and(BoolType) - Method in class net.imglib2.type.logic.BoolType
- and(T) - Method in interface net.imglib2.type.BooleanType
- angleFromR(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute the angle of rotation from a rotation matrix.
- apply(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.MixedTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- apply(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
- apply(int[], int[]) - Method in interface net.imglib2.transform.Transform
-
Apply the
Transform
to a source vector to obtain a target vector. - apply(long[], long[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.MixedTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- apply(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
- apply(long[], long[]) - Method in interface net.imglib2.transform.Transform
-
Apply the
Transform
to a source vector to obtain a target vector. - apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.MixedTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SequentializeTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.ShearTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SlicingTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- apply(Localizable, Positionable) - Method in class net.imglib2.transform.InverseTransform
- apply(Localizable, Positionable) - Method in interface net.imglib2.transform.Transform
- applyChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- applyInverse(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
- applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
- applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- applyInverse(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
- applyInverse(int[], int[]) - Method in interface net.imglib2.transform.InvertibleTransform
-
Apply the inverse transform to a target vector to obtain a source vector.
- applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
- applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
- applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- applyInverse(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
- applyInverse(long[], long[]) - Method in interface net.imglib2.transform.InvertibleTransform
-
Apply the inverse transform to a target vector to obtain a source vector.
- applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.SequentializeTransform
- applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform
- applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.InverseTransform
- applyInverse(Positionable, Localizable) - Method in interface net.imglib2.transform.InvertibleTransform
-
Apply the inverse transform to a target
Localizable
to obtain a sourcePositionable
. - applyInverseChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- argb(int) - Method in class net.imglib2.display.AbstractArrayColorTable
- argb(int) - Method in interface net.imglib2.display.ArrayColorTable
-
Converts the tuple at the given position into a packed ARGB value.
- ARGB_COLOR_MODEL - Static variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
- ARGBARGBDoubleConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter
- ARGBARGBDoubleConverter() - Constructor for class net.imglib2.converter.ARGBARGBDoubleConverter
- argbChannel(RandomAccessible<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
-
Create a
WriteConvertedRandomAccessible
to one of the four channels encoded in aRandomAccessible
ofARGBType
. - argbChannel(RandomAccessibleInterval<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
-
Create a
WriteConvertedRandomAccessibleInterval
to one of the four channels encoded in aRandomAccessibleInterval
ofARGBType
. - argbChannels(RandomAccessibleInterval<ARGBType>) - Static method in class net.imglib2.converter.Converters
-
Create an (n+1)-dimensional
RandomAccessible
of an n-dimensionalRandomAccessible
that maps the four channels encoded inARGBType
into a dimension. - argbChannels(RandomAccessibleInterval<ARGBType>, int...) - Static method in class net.imglib2.converter.Converters
-
Create an (n+1)-dimensional
RandomAccessible
of an n-dimensionalRandomAccessible
that maps the four channels encoded inARGBType
into a dimension. - ARGBChannelSamplerConverter - Class in net.imglib2.converter.readwrite
-
Access the on channel of an
ARGBType
as an UnsignedByteType. - ARGBChannelSamplerConverter(int) - Constructor for class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
- ARGBDoubleARGBConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter
- ARGBDoubleARGBConverter() - Constructor for class net.imglib2.converter.ARGBDoubleARGBConverter
- ARGBDoubleType - Class in net.imglib2.type.numeric
- ARGBDoubleType() - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
- ARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
- argbs(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- argbs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- argbs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- argbs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- ARGBScreenImage - Class in net.imglib2.display.screenimage.awt
- ARGBScreenImage(int, int) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
- ARGBScreenImage(int, int, int[]) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
-
Create an
Image
withdata
. - ARGBScreenImage(int, int, IntArray) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
-
Create an
Image
withdata
. - ARGBType - Class in net.imglib2.type.numeric
-
A
native
NumericType
that encodes four channels at unsigned byte precision into one 32bit signed integer which is the format used in most display oriented image processing libraries such as AWT or ImageJ. - ARGBType() - Constructor for class net.imglib2.type.numeric.ARGBType
- ARGBType(int) - Constructor for class net.imglib2.type.numeric.ARGBType
- ARGBType(IntAccess) - Constructor for class net.imglib2.type.numeric.ARGBType
- ARGBType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.ARGBType
- ArrayColorTable<T> - Interface in net.imglib2.display
-
Interface for all
ColorTable
implementations that use an array to store their color table information. - ArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
- ArrayCursor(ArrayCursor<T>) - Constructor for class net.imglib2.img.array.ArrayCursor
- ArrayCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayCursor
- ArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.array
-
Trivial interface for primitive array based data access implementations that can replicate themselves and return the underlying array.
- ArrayImg<T extends NativeType<T>,A> - Class in net.imglib2.img.array
-
This
Img
stores an image in a single linear array of basic types. - ArrayImg(A, long[], Fraction) - Constructor for class net.imglib2.img.array.ArrayImg
- ArrayImgAWTScreenImage<T extends NativeType<T>,A> - Class in net.imglib2.display.screenimage.awt
-
An
AWTScreenImage
that is anArrayImg
. - ArrayImgAWTScreenImage(ArrayImg<T, A>) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
- ArrayImgAWTScreenImage(T, A, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
- ArrayImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.array
- ArrayImgFactory() - Constructor for class net.imglib2.img.array.ArrayImgFactory
- ArrayImgs - Class in net.imglib2.img.array
- ArrayImgXYByteProjector<A extends GenericByteType<A>> - Class in net.imglib2.display.projector.specialized
-
Fast implementation of a
AbstractProjector2D
that selects a 2D data plain from an ByteType ArrayImg. - ArrayImgXYByteProjector(ArrayImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector
-
Normalizes an ArrayImg and writes the result into target.
- ArrayImgXYShortProjector<A extends GenericShortType<A>> - Class in net.imglib2.display.projector.specialized
-
Fast implementation of a
AbstractProjector2D
that selects a 2D data plain from an ShortType ArrayImg. - ArrayImgXYShortProjector(ArrayImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector
-
Normalizes an ArrayImg and writes the result into target.
- ArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
- ArrayLocalizingCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
-
TODO Javadoc
- ArrayLocalizingCursor(ArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
-
TODO Javadoc
- ArrayLocalizingSubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
-
Localizing
AbstractArrayLocalizingCursor
on anArrayImg
. - ArrayLocalizingSubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
-
TODO Javadoc
- ArrayLocalizingSubIntervalCursor(ArrayLocalizingSubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
-
TODO Javadoc
- ArrayRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.array
-
RandomAccess
on anArrayImg
. - ArrayRandomAccess(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
- ArrayRandomAccess(ArrayRandomAccess<T>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
- ArraySubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
- ArraySubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
-
TODO Javadoc
- ArraySubIntervalCursor(ArraySubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
-
TODO Javadoc
- average(double[]) - Static method in class net.imglib2.util.Util
- average(float[]) - Static method in class net.imglib2.util.Util
- averageDouble(List<Double>) - Static method in class net.imglib2.util.Util
- averageFloat(List<Float>) - Static method in class net.imglib2.util.Util
- AWTScreenImage - Interface in net.imglib2.display.screenimage.awt
-
A
ScreenImage
that produces AWTImage
objects. - AWTScreenImageUtil - Class in net.imglib2.display.screenimage.awt
-
Utility class to create
AWTScreenImage
s. - AWTScreenImageUtil() - Constructor for class net.imglib2.display.screenimage.awt.AWTScreenImageUtil
- axes - Variable in class net.imglib2.view.HyperSlice
- axisFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute the axis of rotation from a rotation matrix.
B
- b - Variable in class net.imglib2.type.numeric.ARGBDoubleType
- b - Variable in class net.imglib2.util.ValuePair
- b - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- B - net.imglib2.converter.ChannelARGBConverter.Channel
- background - Variable in class net.imglib2.converter.VolatileRealTypeARGBConverter
- BasePairBitType - Class in net.imglib2.type.label
-
Representation of base pairs using 3 bits per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the
BasePairBitType.Base
enumeration. - BasePairBitType() - Constructor for class net.imglib2.type.label.BasePairBitType
- BasePairBitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.label.BasePairBitType
- BasePairBitType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairBitType
- BasePairBitType.Base - Enum in net.imglib2.type.label
- BasePairCharType - Class in net.imglib2.type.label
-
Representation of base pairs using one char per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the
BasePairBitType.Base
enumeration. - BasePairCharType() - Constructor for class net.imglib2.type.label.BasePairCharType
- BasePairCharType(char) - Constructor for class net.imglib2.type.label.BasePairCharType
- BasePairCharType(NativeImg<?, ? extends CharAccess>) - Constructor for class net.imglib2.type.label.BasePairCharType
- BasePairCharType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairCharType
- BasePairType<T extends BasePairType<T>> - Interface in net.imglib2.type
-
TODO
- baseToValue() - Method in interface net.imglib2.type.BasePairType
- baseToValue() - Method in class net.imglib2.type.label.BasePairBitType
- baseToValue() - Method in class net.imglib2.type.label.BasePairCharType
- bck(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- bck(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- bck(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
- bck(int) - Method in class net.imglib2.img.cell.CellRandomAccess
- bck(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- bck(int) - Method in class net.imglib2.img.list.ListRandomAccess
- bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- bck(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- bck(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
- bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
- bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- bck(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- bck(int) - Method in class net.imglib2.Point
- bck(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- bck(int) - Method in interface net.imglib2.Positionable
-
Move by -1 in one dimension.
- bck(int) - Method in class net.imglib2.RealPoint
- bck(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- bck(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- bck(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- bck(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- bck(int) - Method in class net.imglib2.view.MixedRandomAccess
- bck(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- bck(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- bck(int) - Method in class net.imglib2.view.SlicingRandomAccess
- bck(int) - Method in class net.imglib2.view.StackView.DefaultRA
- bck(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- bck(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- bck(int) - Method in class net.imglib2.view.TransformRandomAccess
- bck(int) - Method in class net.imglib2.view.TranslationRandomAccess
- bckDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess
-
Moves one step backward in dimension 0
- beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
- beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- benchmark(int, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
-
Run a benchmark numRuns times and record the milliseconds taken for each run.
- benchmarkAndPrint(int, boolean, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
-
Run a benchmark numRuns times and print the results to
System.out
. - BenchmarkHelper - Class in net.imglib2.util
-
Tools for setting up basic benchmarks.
- BenchmarkHelper() - Constructor for class net.imglib2.util.BenchmarkHelper
- bestPoint - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- bestPoints - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- bestSquDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- bestSquDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- BinMapper1d<T> - Interface in net.imglib2.histogram
-
An interface for defining a bin mapping algorithm.
- Binning - Class in net.imglib2.util
-
Static utility methods to convert from a value to a bin, useful for dealing with histograms and LUTs.
- Binning() - Constructor for class net.imglib2.util.Binning
- bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- bits(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- BitType - Class in net.imglib2.type.logic
-
TODO
- BitType() - Constructor for class net.imglib2.type.logic.BitType
- BitType(boolean) - Constructor for class net.imglib2.type.logic.BitType
- BitType(LongAccess) - Constructor for class net.imglib2.type.logic.BitType
- BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.logic.BitType
- blue(int) - Static method in class net.imglib2.type.numeric.ARGBType
- BLUE - Static variable in interface net.imglib2.display.ColorTable
- BooleanNtree - Class in net.imglib2.img.sparse
-
BitAccess based on a
Ntree
<Boolean>
. - BooleanNtree(long[], long[], boolean) - Constructor for class net.imglib2.img.sparse.BooleanNtree
- BooleanType<T extends BooleanType<T>> - Interface in net.imglib2.type
-
TODO
- BoolType - Class in net.imglib2.type.logic
-
A
BooleanType
wrapping a single primitiveboolean
variable. - BoolType() - Constructor for class net.imglib2.type.logic.BoolType
- BoolType(boolean) - Constructor for class net.imglib2.type.logic.BoolType
- BoolType(T) - Constructor for class net.imglib2.type.logic.BoolType
- boundary - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
- Bounded - Interface in net.imglib2.outofbounds
-
Interface implemented by entities (
Sampler
s,Positionable
s,Localizable
s) that can tell whether they are currently located outside of the image boundaries. - boundingBox - Variable in class net.imglib2.view.TransformBuilder
-
Interval transformed to the currently visited view.
- BoundingBox - Class in net.imglib2.transform.integer
-
TODO
- BoundingBox(int) - Constructor for class net.imglib2.transform.integer.BoundingBox
- BoundingBox(long[], long[]) - Constructor for class net.imglib2.transform.integer.BoundingBox
- BoundingBox(Interval) - Constructor for class net.imglib2.transform.integer.BoundingBox
- BoundingBoxTransform - Interface in net.imglib2.transform.integer
-
Implemented by Transforms that can transform (easily) a BoundingBox in the source space to a bounding box in the target space.
- build() - Method in class net.imglib2.view.TransformBuilder
-
Create a sequence of wrapped RandomAccessibles from the
TransformBuilder.transforms
list. - buildIterableInterval() - Method in class net.imglib2.view.iteration.IterableTransformBuilder
-
Create an
IterableInterval
on theInterval
specified in the constructor of theRandomAccessible
specified in the constructor. - ByteAccess - Interface in net.imglib2.img.basictypeaccess
-
TODO
- ByteArray - Class in net.imglib2.img.basictypeaccess.array
- ByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
- ByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
- ByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt
-
A
AWTScreenImage
that is anArrayImg<ByteType, ByteArray>
. - ByteAWTScreenImage(ArrayImg<ByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
- ByteAWTScreenImage(ByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
- ByteNtree - Class in net.imglib2.img.sparse
-
ByteAccess based on a
Ntree
<Byte>
. - ByteNtree(long[], long[], Byte) - Constructor for class net.imglib2.img.sparse.ByteNtree
- bytes - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
- bytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- bytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- bytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- bytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- ByteType - Class in net.imglib2.type.numeric.integer
-
TODO
- ByteType() - Constructor for class net.imglib2.type.numeric.integer.ByteType
- ByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteType
- ByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteType
- ByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteType
C
- C - net.imglib2.type.label.BasePairBitType.Base
- Cell<A> - Class in net.imglib2.img.cell
-
A cell of an
AbstractCellImg
. - Cell(int[], long[], A) - Constructor for class net.imglib2.img.cell.Cell
- CellCursor<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
-
Cursor
on aAbstractCellImg
. - CellCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellCursor
- CellCursor(CellCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellCursor
- cellDimension(int) - Method in class net.imglib2.img.cell.CellGrid
-
Get the number of pixels in a standard cell in a given dimension d.
- cellDimensions(int[]) - Method in class net.imglib2.img.cell.CellGrid
-
Write the number of pixels in a standard cell in each dimension into long[].
- cellDims - Variable in class net.imglib2.img.cell.CellRandomAccess
- CellGrid - Class in net.imglib2.img.cell
-
Defines
AbstractCellImg
geometry and translates between image, cell, and grid coordinates. - CellGrid(long[], int[]) - Constructor for class net.imglib2.img.cell.CellGrid
- CellGrid(CellGrid) - Constructor for class net.imglib2.img.cell.CellGrid
- CellImg<T extends NativeType<T>,A> - Class in net.imglib2.img.cell
- CellImg(CellImgFactory<T>, CellGrid, ListImg<Cell<A>>, Fraction) - Constructor for class net.imglib2.img.cell.CellImg
- CellImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.cell
-
Factory for creating
CellImgs
. - CellImgFactory() - Constructor for class net.imglib2.img.cell.CellImgFactory
- CellImgFactory(int...) - Constructor for class net.imglib2.img.cell.CellImgFactory
- CellIterationOrder - Class in net.imglib2.img.cell
-
Iteration order for a
CellImg
. - CellIterationOrder(AbstractCellImg<?, ?, ?, ?>) - Constructor for class net.imglib2.img.cell.CellIterationOrder
- CellLocalizingCursor<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
-
Localizing
Cursor
on aAbstractCellImg
. - CellLocalizingCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
- CellLocalizingCursor(CellLocalizingCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
- CellRandomAccess<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
-
RandomAccess
on aAbstractCellImg
. - CellRandomAccess(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
- CellRandomAccess(CellRandomAccess<T, C>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
- cells - Variable in class net.imglib2.img.cell.AbstractCellImg
- centerValuesPerBin(int, double, double) - Static method in class net.imglib2.util.Binning
-
Returns array of center values for each bin.
- ChannelARGBConverter - Class in net.imglib2.converter
-
Convert UnsignedByteType into one channel of
ARGBType
. - ChannelARGBConverter(ChannelARGBConverter.Channel) - Constructor for class net.imglib2.converter.ChannelARGBConverter
- ChannelARGBConverter.Channel - Enum in net.imglib2.converter
- CharAccess - Interface in net.imglib2.img.basictypeaccess
-
TODO
- CharArray - Class in net.imglib2.img.basictypeaccess.array
- CharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
- CharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
- CharNtree - Class in net.imglib2.img.sparse
-
CharAccess based on a
Ntree
<Char>
. - CharNtree(long[], long[], Character) - Constructor for class net.imglib2.img.sparse.CharNtree
- checkBijectivity(int[]) - Static method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- checkInterval(Interval, int[]) - Static method in class net.imglib2.transform.integer.permutation.PermutationTransform
-
Test whether a given lut can be applied to an interval.
- checkOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- clip - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- clone() - Method in class net.imglib2.util.Fraction
- code - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
-
Index into
NLinearInterpolator.weights
array. - collapse(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
-
Collapse the nth dimension of an n -dimensional
RandomAccessible
<T> into an (n -1)-dimensionalRandomAccessible
<GenericComposite
<T>> - collapse(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
-
Collapse the nth dimension of an n -dimensional
RandomAccessibleInterval
<T> into an ( n-1)-dimensionalRandomAccessibleInterval
<GenericComposite
<T>> - collapseNumeric(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
-
Collapse the nth dimension of an n -dimensional
RandomAccessible
<T extendsNumericType
<T>> into an (n-1)-dimensionalRandomAccessible
<NumericComposite
<T>> - collapseNumeric(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
-
Collapse the nth dimension of an n -dimensional
RandomAccessibleInterval
<T extendsNumericType
<T>> into an (n-1)-dimensionalRandomAccessibleInterval
<NumericComposite
<T>> - collapseReal(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
-
Collapse the nth dimension of an n -dimensional
RandomAccessible
<T extendsRealType
<T>> into an (n-1)-dimensionalRandomAccessible
<RealComposite
<T>> - collapseReal(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
-
Collapse the nth dimension of an n -dimensional
RandomAccessibleInterval
<T extendsRealType
<T>> into an (n-1)-dimensionalRandomAccessibleInterval
<RealComposite
<T>> - ColorTable - Interface in net.imglib2.display
- ColorTable16 - Class in net.imglib2.display
-
16-bit color lookup table.
- ColorTable16() - Constructor for class net.imglib2.display.ColorTable16
-
Initializes a 16-bit color table with a linear grayscale ramp.
- ColorTable16(short[]...) - Constructor for class net.imglib2.display.ColorTable16
-
Initializes a 16-bit color table with the given table values.
- ColorTable8 - Class in net.imglib2.display
-
8-bit color lookup table.
- ColorTable8() - Constructor for class net.imglib2.display.ColorTable8
-
Initializes an 8-bit color table with a linear grayscale ramp.
- ColorTable8(byte[]...) - Constructor for class net.imglib2.display.ColorTable8
-
Initializes an 8-bit color table with the given table values.
- cols(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
- compare(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongType
- compare(L, L) - Method in class net.imglib2.KDTree.DimComparator
- compareTo(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
- compareTo(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
- compareTo(BitType) - Method in class net.imglib2.type.logic.BitType
- compareTo(BoolType) - Method in class net.imglib2.type.logic.BoolType
- compareTo(LongType) - Method in class net.imglib2.type.numeric.integer.LongType
- compareTo(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- compareTo(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- compareTo(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- compareTo(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- compareTo(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- compareTo(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- compareTo(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
- compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- compareTo(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- compareTo(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- complement() - Method in interface net.imglib2.type.BasePairType
- complement() - Method in class net.imglib2.type.label.BasePairBitType
- complement() - Method in class net.imglib2.type.label.BasePairCharType
- complexConjugate() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- complexConjugate() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- complexConjugate() - Method in interface net.imglib2.type.numeric.ComplexType
- complexConjugate() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- complexConjugate() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- complexConjugate() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- complexDoubles(double[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- complexDoubles(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- complexDoubles(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- complexDoubles(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- ComplexDoubleType - Class in net.imglib2.type.numeric.complex
-
TODO
- ComplexDoubleType() - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
- ComplexDoubleType(double, double) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
- ComplexDoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
- ComplexDoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
- complexFloats(float[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- complexFloats(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- complexFloats(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- complexFloats(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- ComplexFloatType - Class in net.imglib2.type.numeric.complex
-
TODO
- ComplexFloatType() - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
- ComplexFloatType(float, float) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
- ComplexFloatType(FloatAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
- ComplexFloatType(NativeImg<?, ? extends FloatAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
- ComplexImaginaryFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
-
Returns the imaginary value of a complex value
- ComplexImaginaryFloatConverter() - Constructor for class net.imglib2.converter.ComplexImaginaryFloatConverter
- ComplexPhaseFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
-
Computes the phase spectrum for a complex value
- ComplexPhaseFloatConverter() - Constructor for class net.imglib2.converter.ComplexPhaseFloatConverter
- ComplexPowerFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
-
Computes the power spectrum for a complex value
- ComplexPowerFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerFloatConverter
- ComplexPowerGLogFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
-
Computes the generalized log of the power spectrum for a complex value
- ComplexPowerGLogFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerGLogFloatConverter
- ComplexRealFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
-
Returns the real value for of complex value
- ComplexRealFloatConverter() - Constructor for class net.imglib2.converter.ComplexRealFloatConverter
- ComplexType<T extends ComplexType<T>> - Interface in net.imglib2.type.numeric
-
TODO
- component - Variable in class net.imglib2.transform.integer.ComponentMappingTransform
-
for each component of the target vector: from which source vector component should it be taken.
- component - Variable in class net.imglib2.transform.integer.MixedTransform
-
for each component of the target vector (before translation).
- component - Variable in class net.imglib2.transform.integer.SlicingTransform
-
specifies for each component of the target vector from which source vector component should it be taken.
- ComponentMapping - Interface in net.imglib2.transform.integer
-
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
- ComponentMappingTransform - Class in net.imglib2.transform.integer
-
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
- ComponentMappingTransform(int) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
- ComponentMappingTransform(int[]) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
- composite - Variable in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- Composite<T> - Interface in net.imglib2.view.composite
-
A
Composite
is a vector of scalars T. - CompositeChannelConverter<T extends Type<T>,A extends Composite<T>> - Class in net.imglib2.converter
-
A converter to extract one channel of a
Composite
. - CompositeChannelConverter(long) - Constructor for class net.imglib2.converter.CompositeChannelConverter
- compositeFactory - Variable in class net.imglib2.view.composite.CompositeView
- CompositeFactory<T,C extends Composite<T>> - Interface in net.imglib2.view.composite
-
A factory to create a
Composite
vector of scalars T given aRandomAccess
. - CompositeIntervalView<T,C extends Composite<T>> - Class in net.imglib2.view.composite
- CompositeIntervalView(RandomAccessibleInterval<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeIntervalView
- CompositeRandomAccess() - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- CompositeRandomAccess(CompositeView.CompositeRandomAccess) - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- CompositeView<T,C extends Composite<T>> - Class in net.imglib2.view.composite
- CompositeView(RandomAccessible<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeView
- CompositeView.CompositeRandomAccess - Class in net.imglib2.view.composite
- CompositeXYProjector<A> - Class in net.imglib2.display.projector.composite
-
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
- CompositeXYProjector(RandomAccessibleInterval<A>, IterableInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYProjector
- CompositeXYRandomAccessibleProjector<A> - Class in net.imglib2.display.projector.composite
-
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
- CompositeXYRandomAccessibleProjector(RandomAccessibleInterval<A>, RandomAccessibleInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
- computeWeight(double) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
- Concatenable<A> - Interface in net.imglib2.concatenate
-
If T implements
Concatenable
<A>
that means you can concatenate it with an A, usually resulting in another T. - concatenate(int, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
-
Concatenate a list of
RandomAccessibleInterval
along the providedconcatenationAxis
. - concatenate(int, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
-
Concatenate an array of
RandomAccessibleInterval
along the providedconcatenationAxis
. - concatenate(int, StackView.StackAccessMode, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
-
Concatenate a list of
RandomAccessibleInterval
along the providedconcatenationAxis
. - concatenate(int, StackView.StackAccessMode, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
-
Concatenate an array of
RandomAccessibleInterval
along the providedconcatenationAxis
. - concatenate(A) - Method in interface net.imglib2.concatenate.Concatenable
-
Concatenate this object with a.
- concatenate(ComponentMapping) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- concatenate(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
- concatenate(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
- concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
- concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- ConcatenateUtils - Class in net.imglib2.concatenate
-
Utilities for manipulating lists of (pre-)concatenable objects.
- ConcatenateUtils() - Constructor for class net.imglib2.concatenate.ConcatenateUtils
- constantRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
- constantRandomAccessibleInterval(T, int, Interval) - Static method in class net.imglib2.util.ConstantUtils
- constantRealRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
- ConstantUtils - Class in net.imglib2.util
- ConstantUtils() - Constructor for class net.imglib2.util.ConstantUtils
- container - Variable in class net.imglib2.img.planar.PlanarCursor
- container - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
- contains(Interval, Interval) - Static method in class net.imglib2.util.Intervals
-
Test whether the
containing
interval completely contains thecontained
interval. - contains(Interval, Localizable) - Static method in class net.imglib2.util.Intervals
-
Test whether the
containing
interval contains thecontained
point. - contains(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
-
Test whether the
containing
interval completely contains thecontained
interval. - contains(RealInterval, RealLocalizable) - Static method in class net.imglib2.util.Intervals
-
Test whether the
containing
interval contains thecontained
point. - convert(A, B) - Method in interface net.imglib2.converter.Converter
- convert(A, T) - Method in class net.imglib2.converter.CompositeChannelConverter
- convert(IterableInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
- convert(IterableInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
- convert(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
- convert(RandomAccessible<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
- convert(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
- convert(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
- convert(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
- convert(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
-
Create a
RealRandomAccessibleRealInterval
whoseRealRandomAccesses
Sampler.get()
you a converted sample. - convert(Sampler<? extends A>) - Method in interface net.imglib2.converter.readwrite.SamplerConverter
- convert(Sampler<? extends ARGBType>) - Method in class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
- convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealDoubleSamplerConverter
- convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealFloatSamplerConverter
- convert(ARGBType, T) - Method in class net.imglib2.converter.ARGBARGBDoubleConverter
- convert(UnsignedByteType, ARGBType) - Method in class net.imglib2.converter.ChannelARGBConverter
- convert(VolatileRealType<?>, ARGBType) - Method in class net.imglib2.converter.VolatileRealTypeARGBConverter
- convert(R, ARGBType) - Method in class net.imglib2.converter.RealARGBConverter
- convert(R, ARGBType) - Method in class net.imglib2.converter.RealLUTConverter
- convert(R, UnsignedByteType) - Method in class net.imglib2.converter.RealUnsignedByteConverter
- convert(R, UnsignedShortType) - Method in class net.imglib2.converter.RealUnsignedShortConverter
- convert(R, DoubleType) - Method in class net.imglib2.converter.RealDoubleConverter
- convert(R, FloatType) - Method in class net.imglib2.converter.ComplexImaginaryFloatConverter
- convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPhaseFloatConverter
- convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerFloatConverter
- convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerGLogFloatConverter
- convert(R, FloatType) - Method in class net.imglib2.converter.ComplexRealFloatConverter
- convert(R, FloatType) - Method in class net.imglib2.converter.RealFloatConverter
- convert(T, ARGBType) - Method in class net.imglib2.converter.ARGBDoubleARGBConverter
- convert(T, T) - Method in class net.imglib2.converter.TypeIdentity
- converted - Variable in class net.imglib2.converter.read.ConvertedCursor
- converted - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
- converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
- converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
- converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
- converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
- converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
- converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
- ConvertedCursor<A,B extends Type<B>> - Class in net.imglib2.converter.read
-
TODO
- ConvertedCursor(Cursor<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedCursor
-
Creates a copy of b for conversion that can be accessed through
ConvertedCursor.get()
. - ConvertedIterableInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
-
TODO
- ConvertedIterableInterval(IterableInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableInterval
-
Creates a copy of b for conversion.
- ConvertedRandomAccess<A,B extends Type<B>> - Class in net.imglib2.converter.read
-
TODO
- ConvertedRandomAccess(RandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccess
- ConvertedRandomAccessible<A,B extends Type<B>> - Class in net.imglib2.converter.read
-
TODO
- ConvertedRandomAccessible(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessible
- ConvertedRandomAccessibleInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
-
TODO
- ConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
- ConvertedRealRandomAccess<A,B extends Type<B>> - Class in net.imglib2.converter.read
-
TODO
- ConvertedRealRandomAccess(RealRandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccess
- ConvertedRealRandomAccessible<A,B extends Type<B>> - Class in net.imglib2.converter.read
-
TODO
- ConvertedRealRandomAccessible(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessible
- ConvertedRealRandomAccessibleRealInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
-
TODO
- ConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
- converter - Variable in class net.imglib2.converter.read.ConvertedCursor
- converter - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
- converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
- converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
- converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
- converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
- converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
- converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
- converter - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
- converter - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
- converter - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
- Converter<A,B> - Interface in net.imglib2.converter
- converterListRGBA - Static variable in class net.imglib2.converter.ChannelARGBConverter
-
ChannelARGBConverter.converterListRGBA
can be used inCompositeXYProjector
to convert a 4-channelUnsignedByteType
into compositeARGBType
. - Converters - Class in net.imglib2.converter
-
Convenience factory methods for sample conversion.
- Converters() - Constructor for class net.imglib2.converter.Converters
- convertRandomAccessibleIterableInterval(S, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
-
Create an
WriteConvertedIterableRandomAccessibleInterval
whoseRandomAccesses
andCursors
Sampler.get()
you a converted sample. - coordinates - Variable in class net.imglib2.PointSampleList
- coordinates - Variable in class net.imglib2.RealPointSampleList
- copy() - Method in class net.imglib2.AbstractCursor
- copy() - Method in class net.imglib2.AbstractCursorInt
- copy() - Method in class net.imglib2.AbstractLocalizingCursor
- copy() - Method in class net.imglib2.AbstractLocalizingCursorInt
- copy() - Method in class net.imglib2.converter.AbstractConvertedCursor
- copy() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- copy() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- copy() - Method in class net.imglib2.converter.read.ConvertedCursor
- copy() - Method in class net.imglib2.converter.read.ConvertedRandomAccess
- copy() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccess
- copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedCursor
- copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
- copy() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
- copy() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
- copy() - Method in interface net.imglib2.histogram.BinMapper1d
-
Returns a copy of this
BinMapper1d<T>
. - copy() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- copy() - Method in class net.imglib2.histogram.Histogram1d
- copy() - Method in class net.imglib2.histogram.HistogramNd
- copy() - Method in class net.imglib2.histogram.Integer1dBinMapper
- copy() - Method in class net.imglib2.histogram.Real1dBinMapper
- copy() - Method in class net.imglib2.img.array.ArrayCursor
- copy() - Method in class net.imglib2.img.array.ArrayImg
- copy() - Method in class net.imglib2.img.array.ArrayLocalizingCursor
- copy() - Method in class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
- copy() - Method in class net.imglib2.img.array.ArrayRandomAccess
- copy() - Method in class net.imglib2.img.array.ArraySubIntervalCursor
- copy() - Method in class net.imglib2.img.cell.CellCursor
- copy() - Method in class net.imglib2.img.cell.CellImg
- copy() - Method in class net.imglib2.img.cell.CellLocalizingCursor
- copy() - Method in class net.imglib2.img.cell.CellRandomAccess
- copy() - Method in class net.imglib2.img.cell.LazyCellImg
- copy() - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
- copy() - Method in interface net.imglib2.img.Img
- copy() - Method in class net.imglib2.img.ImgView
- copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- copy() - Method in class net.imglib2.img.list.ListCursor
- copy() - Method in class net.imglib2.img.list.ListImg
- copy() - Method in class net.imglib2.img.list.ListLocalizingCursor
- copy() - Method in class net.imglib2.img.list.ListRandomAccess
- copy() - Method in class net.imglib2.img.planar.PlanarCursor
- copy() - Method in class net.imglib2.img.planar.PlanarImg
- copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
- copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
- copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
- copy() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
- copy() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
- copy() - Method in class net.imglib2.img.planar.PlanarRandomAccess
- copy() - Method in class net.imglib2.img.sparse.NtreeCursor
- copy() - Method in class net.imglib2.img.sparse.NtreeImg
- copy() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- copy() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
- copy() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
- copy() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
- copy() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- copy() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
- copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
- copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
- copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
- copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
- copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- copy() - Method in class net.imglib2.KDTree.KDTreeCursor
- copy() - Method in class net.imglib2.KDTree.SamplerNode
- copy() - Method in class net.imglib2.KDTree.ValueNode
- copy() - Method in class net.imglib2.KDTreeNode
- copy() - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
-
Create a copy.
- copy() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- copy() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- copy() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
-
Create a copy.
- copy() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- copy() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- copy() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- copy() - Method in interface net.imglib2.outofbounds.OutOfBounds
- copy() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- copy() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
- copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
- copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
- copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
- copy() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- copy() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
- copy() - Method in interface net.imglib2.outofbounds.RealOutOfBounds
- copy() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- copy() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- copy() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- copy() - Method in interface net.imglib2.Sampler
- copy() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- copy() - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
- copy() - Method in class net.imglib2.transform.integer.shear.ShearTransform
- copy() - Method in class net.imglib2.type.label.BasePairBitType
- copy() - Method in class net.imglib2.type.label.BasePairCharType
- copy() - Method in class net.imglib2.type.logic.BitType
- copy() - Method in class net.imglib2.type.logic.BoolType
- copy() - Method in class net.imglib2.type.numeric.ARGBDoubleType
- copy() - Method in class net.imglib2.type.numeric.ARGBType
- copy() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- copy() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- copy() - Method in class net.imglib2.type.numeric.integer.ByteType
- copy() - Method in class net.imglib2.type.numeric.integer.IntType
- copy() - Method in class net.imglib2.type.numeric.integer.LongType
- copy() - Method in class net.imglib2.type.numeric.integer.ShortType
- copy() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- copy() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
- copy() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
- copy() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
- copy() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- copy() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- copy() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- copy() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- copy() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- copy() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- copy() - Method in class net.imglib2.type.numeric.real.DoubleType
- copy() - Method in class net.imglib2.type.numeric.real.FloatType
- copy() - Method in interface net.imglib2.type.Type
- copy() - Method in class net.imglib2.type.volatiles.VolatileNumericType
- copy() - Method in class net.imglib2.type.volatiles.VolatileRealType
- copy() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- copy() - Method in class net.imglib2.view.composite.NumericComposite
- copy() - Method in class net.imglib2.view.composite.RealComposite
- copy() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- copy() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- copy() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- copy() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
- copy() - Method in class net.imglib2.view.iteration.SlicingCursor
- copy() - Method in class net.imglib2.view.MixedRandomAccess
- copy() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- copy() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- copy() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- copy() - Method in class net.imglib2.view.SlicingRandomAccess
- copy() - Method in class net.imglib2.view.StackView.DefaultRA
- copy() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- copy() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- copy() - Method in class net.imglib2.view.TransformRandomAccess
- copy() - Method in class net.imglib2.view.TranslationRandomAccess
- copy(boolean[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
- copy(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set C = A, where A is a matrix.
- copy(double[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
-
Copy a flat array of doubles into an Img.
- copy(float[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
- copy(int[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
- copy(long[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
- copy(Img<T>, boolean[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
- copy(Img<T>, double[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
-
Copy the contents of an Img to a double array
- copy(Img<T>, float[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
- copy(Img<T>, int[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
- copy(Img<T>, long[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
- copyCursor() - Method in class net.imglib2.AbstractCursor
- copyCursor() - Method in class net.imglib2.AbstractCursorInt
- copyCursor() - Method in class net.imglib2.AbstractLocalizingCursor
- copyCursor() - Method in class net.imglib2.AbstractLocalizingCursorInt
- copyCursor() - Method in class net.imglib2.converter.AbstractConvertedCursor
- copyCursor() - Method in interface net.imglib2.Cursor
- copyCursor() - Method in class net.imglib2.img.array.ArrayCursor
- copyCursor() - Method in class net.imglib2.img.array.ArrayLocalizingCursor
- copyCursor() - Method in class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
- copyCursor() - Method in class net.imglib2.img.array.ArraySubIntervalCursor
- copyCursor() - Method in class net.imglib2.img.cell.CellCursor
- copyCursor() - Method in class net.imglib2.img.cell.CellLocalizingCursor
- copyCursor() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- copyCursor() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- copyCursor() - Method in class net.imglib2.img.list.ListCursor
- copyCursor() - Method in class net.imglib2.img.list.ListLocalizingCursor
- copyCursor() - Method in class net.imglib2.img.planar.PlanarCursor
- copyCursor() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
- copyCursor() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
- copyCursor() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
- copyCursor() - Method in class net.imglib2.img.sparse.NtreeCursor
- copyCursor() - Method in class net.imglib2.KDTree.KDTreeCursor
- copyCursor() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- copyCursor() - Method in interface net.imglib2.RealCursor
- copyCursor() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- copyCursor() - Method in class net.imglib2.view.iteration.SlicingCursor
- copyCursor() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- copyDataTo(AbstractCellImg<T, ?, ?, ?>) - Method in class net.imglib2.img.cell.AbstractCellImg
- copyRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- copyRandomAccess() - Method in class net.imglib2.img.array.ArrayRandomAccess
- copyRandomAccess() - Method in class net.imglib2.img.cell.CellRandomAccess
- copyRandomAccess() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- copyRandomAccess() - Method in class net.imglib2.img.list.ListRandomAccess
- copyRandomAccess() - Method in class net.imglib2.img.planar.PlanarRandomAccess
- copyRandomAccess() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
- copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
- copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
- copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
- copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
- copyRandomAccess() - Method in interface net.imglib2.RandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.MixedRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- copyRandomAccess() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.SlicingRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.StackView.DefaultRA
- copyRandomAccess() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- copyRandomAccess() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.TransformRandomAccess
- copyRandomAccess() - Method in class net.imglib2.view.TranslationRandomAccess
- copyRealRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- copyRealRandomAccess() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
- copyRealRandomAccess() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
- copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
- copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
- copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
- copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- copyRealRandomAccess() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- copyRealRandomAccess() - Method in interface net.imglib2.RealRandomAccess
- corner1 - Variable in class net.imglib2.transform.integer.BoundingBox
- corner1(long[]) - Method in class net.imglib2.transform.integer.BoundingBox
- corner2 - Variable in class net.imglib2.transform.integer.BoundingBox
- corner2(long[]) - Method in class net.imglib2.transform.integer.BoundingBox
- countData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
-
Counts the data contained in the given data source using the underlying bin distribution.
- countData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
-
Counts the data contained in the given data source using the underlying bin distribution.
- countData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
-
Counts the data contained in the given data source using the underlying bin distribution.
- create(int[], T) - Method in class net.imglib2.img.ImgFactory
-
The
ImgFactory
can decide how to create theImg
. - create(long[], T) - Method in class net.imglib2.img.array.ArrayImgFactory
- create(long[], T) - Method in class net.imglib2.img.cell.CellImgFactory
- create(long[], T) - Method in class net.imglib2.img.ImgFactory
-
The
ImgFactory
can decide how to create theImg
. - create(long[], T) - Method in class net.imglib2.img.list.ListImgFactory
- create(long[], T) - Method in class net.imglib2.img.NativeImgFactory
- create(long[], T) - Method in class net.imglib2.img.planar.PlanarImgFactory
- create(long[], T) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- create(F) - Method in interface net.imglib2.interpolation.InterpolatorFactory
- create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsBorderFactory
- create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
- create(F) - Method in interface net.imglib2.outofbounds.OutOfBoundsFactory
- create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
- create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodicFactory
- create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
- create(F) - Method in interface net.imglib2.outofbounds.RealOutOfBoundsFactory
- create(F, RealInterval) - Method in interface net.imglib2.interpolation.InterpolatorFactory
- create(Supplier<T>, int[]) - Method in class net.imglib2.img.ImgFactory
-
The
ImgFactory
can decide how to create theImg
. - create(Supplier<T>, long...) - Method in class net.imglib2.img.ImgFactory
-
The
ImgFactory
can decide how to create theImg
. - create(Supplier<T>, Dimensions) - Method in class net.imglib2.img.ImgFactory
-
The
ImgFactory
can decide how to create theImg
. - create(Dimensions, T) - Method in class net.imglib2.img.ImgFactory
-
The
ImgFactory
can decide how to create theImg
. - create(Interval) - Static method in class net.imglib2.iterator.IntervalIterator
- create(KNearestNeighborSearch<T>) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
-
Creates a new
InverseDistanceWeightingInterpolator
using a copy of the passedKNearestNeighborSearch
. - create(KNearestNeighborSearch<T>, RealInterval) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
-
Creates a new
InverseDistanceWeightingInterpolator
using a copy of the passedKNearestNeighborSearch
. - create(NearestNeighborSearch<T>) - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
-
Creates a new
NearestNeighborSearchInterpolator
using a copy of the passedNearestNeighborSearch
. - create(NearestNeighborSearch<T>, RealInterval) - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
-
Creates a new
NearestNeighborSearchInterpolator
using a copy of the passedNearestNeighborSearch
. - create(RandomAccess<T>) - Method in interface net.imglib2.view.composite.CompositeFactory
- create(RandomAccess<T>) - Method in class net.imglib2.view.composite.GenericComposite.Factory
- create(RandomAccess<T>) - Method in class net.imglib2.view.composite.NumericComposite.Factory
- create(RandomAccess<T>) - Method in class net.imglib2.view.composite.RealComposite.Factory
- create(RandomAccessible<ARGBType>) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
- create(RandomAccessible<ARGBType>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
-
For now, ignore the
RealInterval
and returnNLinearInterpolatorARGBFactory.create(RandomAccessible)
. - create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
- create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
- create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
- create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
- create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
-
For now, ignore the
RealInterval
and returnFloorInterpolatorFactory.create(RandomAccessible)
. - create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
-
For now, ignore the
RealInterval
and returnLanczosInterpolatorFactory.create(RandomAccessible)
. - create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
-
For now, ignore the
RealInterval
and returnNearestNeighborInterpolatorFactory.create(RandomAccessible)
. - create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
-
For now, ignore the
RealInterval
and returnNLinearInterpolatorFactory.create(RandomAccessible)
. - create(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.IterableRandomAccessibleInterval
- createAllocationSteps(int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
-
Create allocation step array from the dimensions of an N-dimensional array.
- createAllocationSteps(long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
-
Create allocation step array from the dimensions of an N-dimensional array.
- createArray(int) - Method in interface net.imglib2.img.basictypeaccess.array.ArrayDataAccess
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.ByteArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.CharArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DoubleArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.FloatArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.IntArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.LongArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.ShortArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
- createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
- createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
- createArray(int, boolean) - Method in interface net.imglib2.img.basictypeaccess.volatiles.VolatileArrayDataAccess
- createByteInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
- createByteInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
- createByteInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
- createByteInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
- createByteInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- createCharInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
- createCharInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
- createCharInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
- createCharInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
- createCharInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- createDataBuffer(A) - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
- createDataBuffer(ByteArray) - Method in class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
- createDataBuffer(ByteArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
- createDataBuffer(DoubleArray) - Method in class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
- createDataBuffer(FloatArray) - Method in class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
- createDataBuffer(IntArray) - Method in class net.imglib2.display.screenimage.awt.IntAWTScreenImage
- createDataBuffer(IntArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
- createDataBuffer(ShortArray) - Method in class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
- createDataBuffer(ShortArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
- createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
- createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
- createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
- createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
- createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
- createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
- createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
- createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
- createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- createGaussianKernel1DDouble(double, boolean) - Static method in class net.imglib2.util.Util
-
This method creates a gaussian kernel
- createInstance(long[]) - Method in class net.imglib2.img.sparse.BooleanNtree
- createInstance(long[]) - Method in class net.imglib2.img.sparse.ByteNtree
- createInstance(long[]) - Method in class net.imglib2.img.sparse.CharNtree
- createInstance(long[]) - Method in class net.imglib2.img.sparse.DoubleNtree
- createInstance(long[]) - Method in class net.imglib2.img.sparse.FloatNtree
- createInstance(long[]) - Method in class net.imglib2.img.sparse.IntNtree
- createInstance(long[]) - Method in class net.imglib2.img.sparse.LongNtree
- createInstance(long[]) - Method in interface net.imglib2.img.sparse.NtreeAccess
- createInstance(long[]) - Method in class net.imglib2.img.sparse.ShortNtree
- createIntInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
- createIntInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
- createIntInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
- createIntInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
- createIntInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- createLinkedType() - Method in class net.imglib2.img.AbstractNativeImg
- createLinkedType() - Method in interface net.imglib2.img.NativeImg
- createLongInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
- createLongInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
- createLongInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
- createLongInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
- createLongInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- createMinMax(double...) - Static method in class net.imglib2.FinalRealInterval
-
Create a
FinalRealInterval
from a parameter list comprising minimum and maximum coordinates. - createMinMax(long...) - Static method in class net.imglib2.FinalInterval
-
Create a
FinalInterval
from a parameter list comprising minimum and maximum coordinates. - createMinMax(long...) - Static method in class net.imglib2.util.Intervals
-
Create a
FinalInterval
from a parameter list comprising minimum and maximum coordinates. - createMinMaxReal(double...) - Static method in class net.imglib2.util.Intervals
-
Create a
FinalRealInterval
from a parameter list comprising minimum and maximum coordinates. - createMinSize(double...) - Static method in class net.imglib2.FinalRealInterval
-
Deprecated.
- createMinSize(long...) - Static method in class net.imglib2.FinalInterval
-
Create a
FinalInterval
from a parameter list comprising minimum coordinates and size. - createMinSize(long...) - Static method in class net.imglib2.util.Intervals
-
Create a
FinalInterval
from a parameter list comprising minimum coordinates and size. - createMinSizeReal(double...) - Static method in class net.imglib2.util.Intervals
-
Deprecated.
- createShortInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
- createShortInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
- createShortInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
- createShortInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
- createShortInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- createSuitableNativeImg(NativeImgFactory<BasePairBitType>, long[]) - Method in class net.imglib2.type.label.BasePairBitType
- createSuitableNativeImg(NativeImgFactory<BasePairCharType>, long[]) - Method in class net.imglib2.type.label.BasePairCharType
- createSuitableNativeImg(NativeImgFactory<BitType>, long[]) - Method in class net.imglib2.type.logic.BitType
- createSuitableNativeImg(NativeImgFactory<ARGBType>, long[]) - Method in class net.imglib2.type.numeric.ARGBType
- createSuitableNativeImg(NativeImgFactory<ComplexDoubleType>, long[]) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- createSuitableNativeImg(NativeImgFactory<ComplexFloatType>, long[]) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- createSuitableNativeImg(NativeImgFactory<ByteType>, long[]) - Method in class net.imglib2.type.numeric.integer.ByteType
- createSuitableNativeImg(NativeImgFactory<IntType>, long[]) - Method in class net.imglib2.type.numeric.integer.IntType
- createSuitableNativeImg(NativeImgFactory<LongType>, long[]) - Method in class net.imglib2.type.numeric.integer.LongType
- createSuitableNativeImg(NativeImgFactory<ShortType>, long[]) - Method in class net.imglib2.type.numeric.integer.ShortType
- createSuitableNativeImg(NativeImgFactory<Unsigned128BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- createSuitableNativeImg(NativeImgFactory<Unsigned12BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
- createSuitableNativeImg(NativeImgFactory<Unsigned2BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
- createSuitableNativeImg(NativeImgFactory<Unsigned4BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
- createSuitableNativeImg(NativeImgFactory<UnsignedByteType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- createSuitableNativeImg(NativeImgFactory<UnsignedIntType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- createSuitableNativeImg(NativeImgFactory<UnsignedLongType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- createSuitableNativeImg(NativeImgFactory<UnsignedShortType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- createSuitableNativeImg(NativeImgFactory<UnsignedVariableBitLengthType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- createSuitableNativeImg(NativeImgFactory<NativeARGBDoubleType>, long[]) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- createSuitableNativeImg(NativeImgFactory<DoubleType>, long[]) - Method in class net.imglib2.type.numeric.real.DoubleType
- createSuitableNativeImg(NativeImgFactory<FloatType>, long[]) - Method in class net.imglib2.type.numeric.real.FloatType
- createSuitableNativeImg(NativeImgFactory<T>, long[]) - Method in interface net.imglib2.type.NativeType
-
The
NativeType
creates theNativeImg
used for storing image data; based on the given storage strategy and its size. - createVariable() - Method in class net.imglib2.type.label.BasePairBitType
- createVariable() - Method in class net.imglib2.type.label.BasePairCharType
- createVariable() - Method in class net.imglib2.type.logic.BitType
- createVariable() - Method in class net.imglib2.type.logic.BoolType
- createVariable() - Method in class net.imglib2.type.numeric.ARGBDoubleType
- createVariable() - Method in class net.imglib2.type.numeric.ARGBType
- createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- createVariable() - Method in class net.imglib2.type.numeric.integer.ByteType
- createVariable() - Method in class net.imglib2.type.numeric.integer.IntType
- createVariable() - Method in class net.imglib2.type.numeric.integer.LongType
- createVariable() - Method in class net.imglib2.type.numeric.integer.ShortType
- createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
- createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
- createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
- createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- createVariable() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- createVariable() - Method in class net.imglib2.type.numeric.real.DoubleType
- createVariable() - Method in class net.imglib2.type.numeric.real.FloatType
- createVariable() - Method in interface net.imglib2.type.Type
-
Creates a new
Type
variable which can only store one value. - createVariable() - Method in class net.imglib2.type.volatiles.VolatileNumericType
- createVariable() - Method in class net.imglib2.type.volatiles.VolatileRealType
- createVariable() - Method in class net.imglib2.view.composite.NumericComposite
-
Generates a 1D
ArrayImg
<T> - createVariable() - Method in class net.imglib2.view.composite.RealComposite
-
Generates a 1D
ArrayImg
<T> - cross(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute cross product, set c = a ^ b.
- currentCellMax - Variable in class net.imglib2.img.cell.CellLocalizingCursor
- currentCellMax - Variable in class net.imglib2.img.cell.CellRandomAccess
- currentCellMin - Variable in class net.imglib2.img.cell.CellLocalizingCursor
- currentCellMin - Variable in class net.imglib2.img.cell.CellRandomAccess
- currentCellSteps - Variable in class net.imglib2.img.cell.CellRandomAccess
- currentConverters - Variable in class net.imglib2.display.projector.composite.CompositeXYProjector
- currentConverters - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
- currentPositions - Variable in class net.imglib2.display.projector.composite.CompositeXYProjector
- currentPositions - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
- cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
- cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- cursor() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
- cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
- cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
- cursor() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- cursor() - Method in class net.imglib2.histogram.Histogram1d
- cursor() - Method in class net.imglib2.histogram.HistogramNd
- cursor() - Method in class net.imglib2.img.array.ArrayImg
- cursor() - Method in class net.imglib2.img.cell.AbstractCellImg
- cursor() - Method in class net.imglib2.img.ImgView
- cursor() - Method in class net.imglib2.img.list.AbstractListImg
- cursor() - Method in class net.imglib2.img.list.AbstractLongListImg
- cursor() - Method in class net.imglib2.img.planar.PlanarImg
- cursor() - Method in class net.imglib2.img.sparse.NtreeImg
- cursor() - Method in interface net.imglib2.IterableInterval
- cursor() - Method in interface net.imglib2.IterableRealInterval
-
Returns a
RealCursor
that iterates with optimal speed without calculating the location at each iteration step. - cursor() - Method in class net.imglib2.KDTree
- cursor() - Method in class net.imglib2.PointSampleList
- cursor() - Method in class net.imglib2.RealPointSampleList
- cursor() - Method in class net.imglib2.view.IntervalView
- cursor() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
- cursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
- cursor(Interval) - Method in class net.imglib2.img.ImgView
- cursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
- cursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
- Cursor<T> - Interface in net.imglib2
-
A Cursor iterates over a set of Localizable elements, for example the image values at the (integer) pixel positions of an image.
- cursorOnCells - Variable in class net.imglib2.img.cell.CellCursor
- cursorOnCells - Variable in class net.imglib2.img.cell.CellLocalizingCursor
D
- d - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- d - Variable in class net.imglib2.view.composite.AbstractComposite
- data - Variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
- data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
- data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
- data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
- data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
- data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
- data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
- data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
- data - Variable in class net.imglib2.img.basictypeaccess.array.IntArray
- data - Variable in class net.imglib2.img.basictypeaccess.array.ShortArray
- dataAccess - Variable in class net.imglib2.type.AbstractBitType
- dataAccess - Variable in class net.imglib2.type.label.BasePairCharType
- dataAccess - Variable in class net.imglib2.type.logic.BitType
- dataAccess - Variable in class net.imglib2.type.numeric.ARGBType
- dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleType
- dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexFloatType
- dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericByteType
- dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericIntType
- dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericLongType
- dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericShortType
- dataAccess - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
- dataAccess - Variable in class net.imglib2.type.numeric.NativeARGBDoubleType
- dataAccess - Variable in class net.imglib2.type.numeric.real.DoubleType
- dataAccess - Variable in class net.imglib2.type.numeric.real.FloatType
- dec() - Method in class net.imglib2.type.logic.BitType
- dec() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- dec() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- dec() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- dec() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- dec() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- dec() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- dec() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- dec() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- dec() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- dec() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- dec() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- dec() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- dec() - Method in class net.imglib2.type.numeric.real.FloatType
- dec() - Method in interface net.imglib2.type.numeric.RealType
- dec() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- decIndex() - Method in class net.imglib2.type.AbstractBitType
- decIndex() - Method in class net.imglib2.type.AbstractNativeType
- decIndex() - Method in class net.imglib2.type.logic.BitType
- decIndex() - Method in interface net.imglib2.type.NativeType
-
Decrement the index into the current data array.
- decIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- decIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- decIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- decIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- decIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- decIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- decIndex() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- decIndex() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- decIndex() - Method in class net.imglib2.type.numeric.real.DoubleType
- decIndex() - Method in class net.imglib2.type.numeric.real.FloatType
- decIndex(int) - Method in class net.imglib2.type.AbstractBitType
- decIndex(int) - Method in class net.imglib2.type.AbstractNativeType
- decIndex(int) - Method in class net.imglib2.type.logic.BitType
- decIndex(int) - Method in interface net.imglib2.type.NativeType
-
Decrease the index into the current data array by
decrement
steps. - decIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- decIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- decIndex(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- decIndex(int) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- decIndex(int) - Method in class net.imglib2.type.numeric.real.DoubleType
- decIndex(int) - Method in class net.imglib2.type.numeric.real.FloatType
- decrement(long) - Method in class net.imglib2.histogram.Histogram1d
-
Directly decrement a bin by position.
- decrement(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Decrements the frequency count of a specified bin.
- decrement(long[]) - Method in class net.imglib2.histogram.HistogramNd
-
Directly decrement a bin by position.
- decrement(List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Directly decrement a bin by value,
- decrement(T) - Method in class net.imglib2.histogram.Histogram1d
-
Directly decrement a bin by value,
- DEFAULT - net.imglib2.view.StackView.StackAccessMode
-
The default behavior is the following.
- DefaultRA(RandomAccessibleInterval<T>[]) - Constructor for class net.imglib2.view.StackView.DefaultRA
- DefaultRA(RandomAccessibleInterval<T>[], Interval) - Constructor for class net.imglib2.view.StackView.DefaultRA
- det3x3(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
Calculates the determinant of a 3x3 matrix given as a double[] (row major).
- det3x3(double, double, double, double, double, double, double, double, double) - Static method in class net.imglib2.util.LinAlgHelpers
-
Calculate the determinant of a 3x3 matrix.
- dfd() - Method in class net.imglib2.histogram.Histogram1d
-
Get the discrete frequency distribution associated with this histogram.
- dfd() - Method in class net.imglib2.histogram.HistogramNd
-
Get the discrete frequency distribution associated with this histogram.
- dim - Variable in class net.imglib2.img.list.AbstractListImg
- DimComparator(int) - Constructor for class net.imglib2.KDTree.DimComparator
- dimension - Variable in class net.imglib2.img.AbstractImg
- dimension - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
-
Dimensions of the wrapped
RandomAccessible
. - dimension - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- dimension - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
-
Dimensions of the wrapped
RandomAccessible
. - dimension(int) - Method in class net.imglib2.AbstractInterval
- dimension(int) - Method in class net.imglib2.AbstractWrappedInterval
- dimension(int) - Method in interface net.imglib2.Dimensions
-
Get the number of pixels in a given dimension d.
- dimension(int) - Method in class net.imglib2.FinalDimensions
- dimension(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- dimension(int) - Method in class net.imglib2.histogram.Histogram1d
-
Return the size of the given dimension of the frequency distribution of this histogram.
- dimension(int) - Method in class net.imglib2.histogram.HistogramNd
-
Return the size of the given dimension of the frequency distribution of this histogram.
- dimension(int) - Method in class net.imglib2.img.AbstractImg
- dimension(int) - Method in class net.imglib2.img.cell.Cell
-
Get the number of pixels in a given dimension d.
- dimension(int) - Method in class net.imglib2.iterator.IntervalIterator
- dimension(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
- dimension(int) - Method in class net.imglib2.view.SubsampleIntervalView
- dimensions - Variable in class net.imglib2.img.cell.Cell
- dimensions - Variable in class net.imglib2.img.cell.CellRandomAccess
- dimensions - Variable in class net.imglib2.img.planar.PlanarImg
- dimensions - Variable in class net.imglib2.iterator.IntervalIterator
- dimensions - Variable in class net.imglib2.view.SubsampleIntervalView
- dimensions(int[]) - Method in class net.imglib2.img.cell.Cell
-
Write the number of pixels in each dimension into long[].
- dimensions(long[]) - Method in class net.imglib2.AbstractInterval
- dimensions(long[]) - Method in class net.imglib2.AbstractWrappedInterval
- dimensions(long[]) - Method in interface net.imglib2.Dimensions
-
Write the number of pixels in each dimension into long[].
- dimensions(long[]) - Method in class net.imglib2.FinalDimensions
- dimensions(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- dimensions(long[]) - Method in class net.imglib2.histogram.Histogram1d
-
Fill the provided long[] with the sizes of all dimensions of the frequency distribution of this histogram.
- dimensions(long[]) - Method in class net.imglib2.histogram.HistogramNd
-
Fill the provided long[] with the sizes of all dimensions of the frequency distribution of this histogram.
- dimensions(long[]) - Method in class net.imglib2.img.AbstractImg
- dimensions(long[]) - Method in class net.imglib2.iterator.IntervalIterator
- dimensions(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
- dimensions(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
- Dimensions - Interface in net.imglib2
-
Defines an extent in n-dimensional discrete space.
- dimensionsAsIntArray(Dimensions) - Static method in class net.imglib2.util.Intervals
-
Create a
int[]
with the dimensions of anInterval
. - dimensionsAsLongArray(Dimensions) - Static method in class net.imglib2.util.Intervals
-
Create a
long[]
with the dimensions of aDimensions
. - dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
- dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- dimX - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
- dimY - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
- dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
- dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
- Dirty - Interface in net.imglib2
-
Interface for objects that can be flagged dirty (useful for access objects that track if their content was modified)
- DirtyByteArray - Class in net.imglib2.img.basictypeaccess.array
- DirtyByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyByteArray
- DirtyByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyByteArray
- DirtyCharArray - Class in net.imglib2.img.basictypeaccess.array
- DirtyCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyCharArray
- DirtyCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyCharArray
- DirtyDoubleArray - Class in net.imglib2.img.basictypeaccess.array
- DirtyDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
- DirtyDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
- DirtyFloatArray - Class in net.imglib2.img.basictypeaccess.array
- DirtyFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
- DirtyFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
- DirtyIntArray - Class in net.imglib2.img.basictypeaccess.array
- DirtyIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyIntArray
- DirtyIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyIntArray
- DirtyLongArray - Class in net.imglib2.img.basictypeaccess.array
- DirtyLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyLongArray
- DirtyLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyLongArray
- DirtyShortArray - Class in net.imglib2.img.basictypeaccess.array
- DirtyShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyShortArray
- DirtyShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyShortArray
- DirtyVolatileByteArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
ByteArray
with anDirtyVolatileByteArray.isDirty()
and anAbstractVolatileByteArray.isValid()
flag. - DirtyVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
- DirtyVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
- DirtyVolatileCharArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
CharArray
with anDirtyVolatileCharArray.isDirty()
and anAbstractVolatileCharArray.isValid()
flag. - DirtyVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
- DirtyVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
- DirtyVolatileDoubleArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
DoubleArray
with anDirtyVolatileDoubleArray.isDirty()
and anAbstractVolatileDoubleArray.isValid()
flag. - DirtyVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
- DirtyVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
- DirtyVolatileFloatArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
FloatArray
with anDirtyVolatileFloatArray.isDirty()
and anAbstractVolatileFloatArray.isValid()
flag. - DirtyVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
- DirtyVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
- DirtyVolatileIntArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
- DirtyVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
- DirtyVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
- DirtyVolatileLongArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
LongArray
with anDirtyVolatileLongArray.isDirty()
and anAbstractVolatileLongArray.isValid()
flag. - DirtyVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
- DirtyVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
- DirtyVolatileShortArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
ShortArray
with anDirtyVolatileShortArray.isDirty()
and anAbstractVolatileShortArray.isValid()
flag. - DirtyVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
- DirtyVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
- discrete - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
- DiscreteFrequencyDistribution - Class in net.imglib2.histogram
-
This class represents an n-dimensional set of counters.
- DiscreteFrequencyDistribution(long[]) - Constructor for class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Construct an n-dimensional counter with the given number of bins
- DiscreteFrequencyDistribution(Img<LongType>) - Constructor for class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Construct an n-dimensional counter using a provided
Img<LongType>
to store counts. - distance(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
get the length of (a - b).
- distance(long[], long[]) - Static method in class net.imglib2.util.Util
- distance(RealLocalizable, RealLocalizable) - Static method in class net.imglib2.util.Util
- distributionCount() - Method in class net.imglib2.histogram.Histogram1d
-
Returns the frequency count of all values in the distribution: lower tail + middle + upper tail.
- distributionCount() - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of all values in the distribution: lower tail + middle + upper tail.
- distributionCount(int, long) - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of all values in the specified dimension of the distribution: lower tail + middle + upper tail.
- div(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
- div(BitType) - Method in class net.imglib2.type.logic.BitType
- div(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
- div(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- div(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
Relies on
BigInteger.divide(BigInteger)
. - div(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- div(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- div(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- div(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- div(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- div(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
- div(Fraction) - Method in class net.imglib2.util.Fraction
- div(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- div(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- div(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- div(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- div(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- div(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- div(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- div(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- div(T) - Method in interface net.imglib2.type.operators.Div
- div(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- div(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- Div<T> - Interface in net.imglib2.type.operators
- divide(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongType
-
Unsigned division of
d1
byd2
. - dot(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute dot product a * b.
- DOUBLE - net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
- DoubleAccess - Interface in net.imglib2.img.basictypeaccess
-
TODO
- DoubleArray - Class in net.imglib2.img.basictypeaccess.array
-
TODO
- DoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DoubleArray
- DoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DoubleArray
- DoubleAWTScreenImage - Class in net.imglib2.display.screenimage.awt
-
A
AWTScreenImage
that is anArrayImg<DoubleType, DoubleArray>
. - DoubleAWTScreenImage(ArrayImg<DoubleType, DoubleArray>) - Constructor for class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
- DoubleAWTScreenImage(DoubleType, DoubleArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
- DoubleNtree - Class in net.imglib2.img.sparse
-
DoubleAccess based on a
Ntree
<Double>
. - DoubleNtree(long[], long[], Double) - Constructor for class net.imglib2.img.sparse.DoubleNtree
- doubles(double[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- doubles(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- doubles(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- doubles(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- DoubleType - Class in net.imglib2.type.numeric.real
-
TODO
- DoubleType() - Constructor for class net.imglib2.type.numeric.real.DoubleType
- DoubleType(double) - Constructor for class net.imglib2.type.numeric.real.DoubleType
- DoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.real.DoubleType
- DoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.real.DoubleType
- dropSingletonDimensions(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
-
Removes all unit dimensions (dimensions with size one) from the RandomAccessibleInterval
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.label.BasePairBitType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.label.BasePairCharType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.logic.BitType
- duplicateTypeOnSameNativeImg() - Method in interface net.imglib2.type.NativeType
-
Creates a new
NativeType
which stores in the same physical array. - duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.ARGBType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.ByteType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.IntType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.LongType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.ShortType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.real.DoubleType
- duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.real.FloatType
E
- edgeValuesPerBin(int, double, double) - Static method in class net.imglib2.util.Binning
-
Returns array of left edge values for each bin.
- element - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- elements - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- emptyScreenImage(T, long[]) - Static method in class net.imglib2.display.screenimage.awt.AWTScreenImageUtil
-
Get an appropriate
AWTScreenImage
given a type and the dimensionality of the incoming image. - entitiesPerPixel - Variable in class net.imglib2.img.AbstractNativeImg
- equalDimensions(Interval, Interval) - Static method in class net.imglib2.util.Intervals
-
Tests weather two intervals have equal dimensions (same size)
- equalIterationOrder(IterableInterval<?>...) - Static method in class net.imglib2.util.Util
-
Checks whether n
IterableInterval
have the same iteration order. - equals(Object) - Method in class net.imglib2.FlatIterationOrder
- equals(Object) - Method in class net.imglib2.img.cell.CellGrid
- equals(Object) - Method in class net.imglib2.img.cell.CellIterationOrder
-
To be equal an object has to be a
CellIterationOrder
on aCellImg
of the same dimensions and cell-dimensions. - equals(Object) - Method in class net.imglib2.Point
- equals(Object) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- equals(Object) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- equals(Object) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- equals(Object) - Method in class net.imglib2.util.ValuePair
- equals(Interval, Interval) - Static method in class net.imglib2.util.Intervals
-
Tests weather two intervals are equal in their min / max
- EuclideanSpace - Interface in net.imglib2
-
{Rn}: an N-dimensional Euclidean space.
- exclusiveValueToBin(int, double, double, double) - Static method in class net.imglib2.util.Binning
-
Convert value to bin number.
- expand(double) - Method in class net.imglib2.util.RealSum
- expand(F, OutOfBoundsFactory<T, ? super F>, long...) - Static method in class net.imglib2.view.Views
-
Expand a RandomAccessibleInterval as specified by border.
- expand(Interval, long) - Static method in class net.imglib2.util.Intervals
-
Grow/shrink an interval in all dimensions.
- expand(Interval, long...) - Static method in class net.imglib2.util.Intervals
-
Grow/shrink an interval in all dimensions.
- expand(Interval, long, int) - Static method in class net.imglib2.util.Intervals
-
Grow/shrink an interval in one dimensions.
- expand(Interval, Dimensions) - Static method in class net.imglib2.util.Intervals
-
Grow/shrink an interval in all dimensions.
- expandBorder(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
-
Expand a RandomAccessibleInterval as specified by border.
- expandMirrorDouble(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
-
Expand a RandomAccessibleInterval as specified by border.
- expandMirrorSingle(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
-
Expand a RandomAccessibleInterval as specified by border.
- expandPeriodic(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
-
Expand a RandomAccessibleInterval as specified by border.
- expandRandom(RandomAccessibleInterval<T>, double, double, long...) - Static method in class net.imglib2.view.Views
-
Expand a RandomAccessibleInterval as specified by border.
- expandValue(RandomAccessibleInterval<T>, T, long...) - Static method in class net.imglib2.view.Views
-
Expand a RandomAccessibleInterval as specified by border.
- expandZero(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
-
Expand a RandomAccessibleInterval as specified by border.
- extend(F, OutOfBoundsFactory<T, ? super F>) - Static method in class net.imglib2.view.Views
-
Extend a RandomAccessibleInterval with an out-of-bounds strategy.
- extendBorder(F) - Static method in class net.imglib2.view.Views
-
Extend a RandomAccessibleInterval with an out-of-bounds strategy to repeat border pixels.
- ExtendedRandomAccessibleInterval<T,F extends RandomAccessibleInterval<T>> - Class in net.imglib2.view
- ExtendedRandomAccessibleInterval(F, OutOfBoundsFactory<T, ? super F>) - Constructor for class net.imglib2.view.ExtendedRandomAccessibleInterval
- ExtendedRealRandomAccessibleRealInterval<T,F extends RealRandomAccessibleRealInterval<T>> - Class in net.imglib2.view
-
Implements
RealRandomAccessible
for aRealRandomAccessibleRealInterval
through anRealOutOfBoundsFactory
. - ExtendedRealRandomAccessibleRealInterval(F, RealOutOfBoundsFactory<T, ? super F>) - Constructor for class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
- extendMirrorDouble(F) - Static method in class net.imglib2.view.Views
-
Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
- extendMirrorSingle(F) - Static method in class net.imglib2.view.Views
-
Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
- extendPeriodic(F) - Static method in class net.imglib2.view.Views
-
Extend a RandomAccessibleInterval with a periodic out-of-bounds strategy.
- extendRandom(F, double, double) - Static method in class net.imglib2.view.Views
-
Extend a RandomAccessibleInterval with a random-value out-of-bounds strategy.
- extendValue(F, T) - Static method in class net.imglib2.view.Views
-
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
- extendZero(F) - Static method in class net.imglib2.view.Views
-
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy where the constant value is the zero-element of the data type.
F
- f(double[], long[]) - Method in class net.imglib2.position.transform.FloorOffset
- f(double, long) - Static method in class net.imglib2.position.transform.FloorOffset
- f(float[], long[]) - Method in class net.imglib2.position.transform.FloorOffset
- f(float, long) - Static method in class net.imglib2.position.transform.FloorOffset
- f(RealLocalizable, long[]) - Method in class net.imglib2.position.transform.FloorOffset
- factory - Variable in class net.imglib2.view.ExtendedRandomAccessibleInterval
- factory - Variable in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
- factory() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- factory() - Method in class net.imglib2.histogram.Histogram1d
- factory() - Method in class net.imglib2.histogram.HistogramNd
- factory() - Method in class net.imglib2.img.array.ArrayImg
- factory() - Method in class net.imglib2.img.cell.CellImg
- factory() - Method in class net.imglib2.img.cell.LazyCellImg
- factory() - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
- factory() - Method in interface net.imglib2.img.Img
-
Get a
ImgFactory
that createsImg
s of the same kind as this one. - factory() - Method in class net.imglib2.img.ImgView
- factory() - Method in class net.imglib2.img.list.AbstractListImg
- factory() - Method in class net.imglib2.img.planar.PlanarImg
- factory() - Method in class net.imglib2.img.sparse.NtreeImg
- Factory() - Constructor for class net.imglib2.view.composite.GenericComposite.Factory
- Factory(int) - Constructor for class net.imglib2.view.composite.NumericComposite.Factory
- Factory(int) - Constructor for class net.imglib2.view.composite.RealComposite.Factory
- fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
-
Fill the
NLinearInterpolator.weights
array. - fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
- fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
- fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
- FinalDimensions - Class in net.imglib2
-
An implementation of dimensionality that can wrap a long[] array.
- FinalDimensions(int...) - Constructor for class net.imglib2.FinalDimensions
-
Create a FinalDimensions with a defined size
- FinalDimensions(long...) - Constructor for class net.imglib2.FinalDimensions
-
Create a FinalDimensions with a defined size
- FinalDimensions(long[], boolean) - Constructor for class net.imglib2.FinalDimensions
-
Protected constructor that can re-use the passed position array.
- FinalInterval - Class in net.imglib2
-
Implementation of the
Interval
interface. - FinalInterval(long...) - Constructor for class net.imglib2.FinalInterval
-
Creates an Interval with the boundaries [0, dimensions-1]
- FinalInterval(long[], long[]) - Constructor for class net.imglib2.FinalInterval
-
Creates an Interval with the boundaries [min, max] (both including)
- FinalInterval(Dimensions) - Constructor for class net.imglib2.FinalInterval
-
Creates an Interval with the boundaries [0, dimensions-1]
- FinalInterval(Interval) - Constructor for class net.imglib2.FinalInterval
-
Creates an Interval from another
Interval
- FinalRealInterval - Class in net.imglib2
-
Implementation of the
RealInterval
interface. - FinalRealInterval(double[], double[]) - Constructor for class net.imglib2.FinalRealInterval
-
Creates a new
AbstractRealInterval
from min and max coordinates - FinalRealInterval(RealInterval) - Constructor for class net.imglib2.FinalRealInterval
-
Creates a new
AbstractRealInterval
using an existingRealInterval
- firstDataValue() - Method in class net.imglib2.histogram.Histogram1d
-
Returns the first data value of the input iteration.
- firstElement() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
- firstElement() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- firstElement() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- firstElement() - Method in class net.imglib2.histogram.Histogram1d
- firstElement() - Method in class net.imglib2.histogram.HistogramNd
- firstElement() - Method in class net.imglib2.img.AbstractImg
- firstElement() - Method in interface net.imglib2.IterableRealInterval
-
Get the first element of this
IterableRealInterval
. - firstElement() - Method in class net.imglib2.KDTree
- firstElement() - Method in class net.imglib2.PointSampleList
- firstElement() - Method in class net.imglib2.RealPointSampleList
- firstElement() - Method in class net.imglib2.view.IntervalView
- firstElement() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
- flags - Variable in class net.imglib2.util.RealSum
- flatIterable(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
-
Return an
IterableInterval
havingFlatIterationOrder
. - FlatIterationOrder - Class in net.imglib2
-
A flat iteration order on an
IterableInterval
. - FlatIterationOrder(Interval) - Constructor for class net.imglib2.FlatIterationOrder
- FloatAccess - Interface in net.imglib2.img.basictypeaccess
-
TODO
- FloatArray - Class in net.imglib2.img.basictypeaccess.array
-
TODO
- FloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.FloatArray
- FloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.FloatArray
- FloatAWTScreenImage - Class in net.imglib2.display.screenimage.awt
-
A
AWTScreenImage
that is anArrayImg<FloatType, FloatArray>
. - FloatAWTScreenImage(ArrayImg<FloatType, FloatArray>) - Constructor for class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
- FloatAWTScreenImage(FloatType, FloatArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
- FloatNtree - Class in net.imglib2.img.sparse
-
FloatAccess based on a
Ntree
<Float>
. - FloatNtree(long[], long[], Float) - Constructor for class net.imglib2.img.sparse.FloatNtree
- floats(float[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- floats(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- floats(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- floats(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- FloatType - Class in net.imglib2.type.numeric.real
-
TODO
- FloatType() - Constructor for class net.imglib2.type.numeric.real.FloatType
- FloatType(float) - Constructor for class net.imglib2.type.numeric.real.FloatType
- FloatType(FloatAccess) - Constructor for class net.imglib2.type.numeric.real.FloatType
- FloatType(NativeImg<?, ? extends FloatAccess>) - Constructor for class net.imglib2.type.numeric.real.FloatType
- floor(double) - Static method in class net.imglib2.position.transform.Floor
- floor(double[], long[]) - Static method in class net.imglib2.position.transform.Floor
- floor(float) - Static method in class net.imglib2.position.transform.Floor
- floor(float[], long[]) - Static method in class net.imglib2.position.transform.Floor
- floor(RealLocalizable, long[]) - Static method in class net.imglib2.position.transform.Floor
- Floor<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
-
A
RealPositionable
that drives aPositionable
to its floor discrete coordinates. - Floor(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Floor
- Floor(RealLocalizable, LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Floor
- FloorInterpolator<T> - Class in net.imglib2.interpolation.randomaccess
-
RealRandomAccess
to aRandomAccess
by nearest floor interpolation (i.e., the value is sampled at floor(x)). - FloorInterpolator(FloorInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolator
- FloorInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolator
- FloorInterpolatorFactory<T> - Class in net.imglib2.interpolation.randomaccess
- FloorInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
- FloorOffset<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
-
A
RealPositionable
that drives aPositionable
to its floor discrete coordinates plus a discrete offset vector. - FloorOffset(LocalizablePositionable, long[]) - Constructor for class net.imglib2.position.transform.FloorOffset
- FloorOffset(LocalizablePositionable, Localizable) - Constructor for class net.imglib2.position.transform.FloorOffset
- FloorOffset(RealLocalizable, LocalizablePositionable, long[]) - Constructor for class net.imglib2.position.transform.FloorOffset
- FloorOffset(RealLocalizable, LocalizablePositionable, Localizable) - Constructor for class net.imglib2.position.transform.FloorOffset
- Fraction - Class in net.imglib2.util
-
Implements the concept of fractions
- Fraction() - Constructor for class net.imglib2.util.Fraction
-
Instantiate a
Fraction
with a value of 1 - Fraction(long, long) - Constructor for class net.imglib2.util.Fraction
-
Creates a new fraction with the respective values
- frequency(long) - Method in class net.imglib2.histogram.Histogram1d
-
Returns the frequency count of the values within a bin.
- frequency(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Returns the frequency count associated with a given bin.
- frequency(long[]) - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of the values within a bin.
- frequency(List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of values within a bin using a set of representative values.
- frequency(T) - Method in class net.imglib2.histogram.Histogram1d
-
Returns the frequency count of values within a bin using a representative value.
- FullSourceMapMixedRandomAccess<T> - Class in net.imglib2.view
- FullSourceMapMixedRandomAccess(FullSourceMapMixedRandomAccess<T>) - Constructor for class net.imglib2.view.FullSourceMapMixedRandomAccess
- FullSourceMapSlicingRandomAccess<T> - Class in net.imglib2.view
- FullSourceMapSlicingRandomAccess(FullSourceMapSlicingRandomAccess<T>) - Constructor for class net.imglib2.view.FullSourceMapSlicingRandomAccess
- fullViewIterableInterval - Variable in class net.imglib2.view.IntervalView
-
TODO Javadoc
- fullViewRandomAccessible - Variable in class net.imglib2.view.IntervalView
-
TODO Javadoc
- fullViewRandomAccessible - Variable in class net.imglib2.view.MixedTransformView
- fullViewRandomAccessible - Variable in class net.imglib2.view.TransformView
- fwd() - Method in class net.imglib2.converter.AbstractConvertedCursor
- fwd() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
- fwd() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
- fwd() - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
- fwd() - Method in class net.imglib2.img.array.AbstractArrayCursor
- fwd() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Move forward.
- fwd() - Method in class net.imglib2.img.cell.CellCursor
- fwd() - Method in class net.imglib2.img.cell.CellLocalizingCursor
- fwd() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- fwd() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- fwd() - Method in class net.imglib2.img.list.ListCursor
- fwd() - Method in class net.imglib2.img.list.ListLocalizingCursor
- fwd() - Method in class net.imglib2.img.planar.PlanarCursor
- fwd() - Method in class net.imglib2.img.planar.PlanarCursor2D
- fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
- fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
- fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
- fwd() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Move forward.
- fwd() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
-
Move forward.
- fwd() - Method in interface net.imglib2.Iterator
-
Move forward.
- fwd() - Method in class net.imglib2.iterator.IntervalIterator
- fwd() - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- fwd() - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
- fwd() - Method in class net.imglib2.KDTree.KDTreeCursor
- fwd() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- fwd() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- fwd() - Method in class net.imglib2.view.iteration.SlicingCursor
-
Move forward.
- fwd() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- fwd(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- fwd(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- fwd(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
- fwd(int) - Method in class net.imglib2.img.cell.CellRandomAccess
- fwd(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- fwd(int) - Method in class net.imglib2.img.list.ListRandomAccess
- fwd(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- fwd(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- fwd(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- fwd(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
- fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
- fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- fwd(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- fwd(int) - Method in class net.imglib2.Point
- fwd(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- fwd(int) - Method in interface net.imglib2.Positionable
-
Move by 1 in one dimension.
- fwd(int) - Method in class net.imglib2.RealPoint
- fwd(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- fwd(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- fwd(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- fwd(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- fwd(int) - Method in class net.imglib2.view.MixedRandomAccess
- fwd(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- fwd(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- fwd(int) - Method in class net.imglib2.view.SlicingRandomAccess
- fwd(int) - Method in class net.imglib2.view.StackView.DefaultRA
- fwd(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- fwd(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- fwd(int) - Method in class net.imglib2.view.TransformRandomAccess
- fwd(int) - Method in class net.imglib2.view.TranslationRandomAccess
- fwdDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess
-
Moves one step forward in dimension 0
G
- g - Variable in class net.imglib2.type.numeric.ARGBDoubleType
- G - net.imglib2.converter.ChannelARGBConverter.Channel
- G - net.imglib2.type.label.BasePairBitType.Base
- gap - net.imglib2.type.label.BasePairBitType.Base
- genericArray(int) - Static method in class net.imglib2.util.Util
- GenericByteType<T extends GenericByteType<T>> - Class in net.imglib2.type.numeric.integer
-
TODO
- GenericByteType() - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
- GenericByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
- GenericByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
- GenericByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
- GenericComposite<T> - Class in net.imglib2.view.composite
-
A generic vector of scalars T.
- GenericComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.GenericComposite
- GenericComposite.Factory<T> - Class in net.imglib2.view.composite
- GenericIntType<T extends GenericIntType<T>> - Class in net.imglib2.type.numeric.integer
-
TODO
- GenericIntType() - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
- GenericIntType(int) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
- GenericIntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
- GenericIntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
- GenericLongType<T extends GenericLongType<T>> - Class in net.imglib2.type.numeric.integer
-
Abstract superclass for Long types.
- GenericLongType() - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
- GenericLongType(long) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
- GenericLongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
- GenericLongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
- GenericShortType<T extends GenericShortType<T>> - Class in net.imglib2.type.numeric.integer
-
Abstract base class for
native
IntegerType
s that encode their value into a 16bit short. - GenericShortType() - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
- GenericShortType(short) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
- GenericShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
- GenericShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
- get() - Method in class net.imglib2.converter.read.ConvertedCursor
- get() - Method in class net.imglib2.converter.read.ConvertedRandomAccess
- get() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccess
- get() - Method in class net.imglib2.converter.readwrite.WriteConvertedCursor
- get() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
- get() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
- get() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
- get() - Method in class net.imglib2.img.array.AbstractArrayCursor
- get() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the
Sampler
points at. - get() - Method in class net.imglib2.img.array.ArrayRandomAccess
- get() - Method in class net.imglib2.img.cell.CellCursor
- get() - Method in class net.imglib2.img.cell.CellLocalizingCursor
- get() - Method in class net.imglib2.img.cell.CellRandomAccess
- get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- get() - Method in class net.imglib2.img.list.ListCursor
- get() - Method in class net.imglib2.img.list.ListLocalizingCursor
- get() - Method in class net.imglib2.img.list.ListRandomAccess
- get() - Method in class net.imglib2.img.planar.PlanarCursor
- get() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
- get() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the
Sampler
points at. - get() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
-
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the
Sampler
points at. - get() - Method in class net.imglib2.img.planar.PlanarRandomAccess
- get() - Method in class net.imglib2.img.sparse.NtreeCursor
- get() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- get() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
- get() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
- get() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
- get() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- get() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
- get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
-
Get the interpolated value at the current position.
- get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
- get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
- get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
- get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
-
Get the interpolated value at the current position.
- get() - Method in class net.imglib2.KDTree.KDTreeCursor
- get() - Method in class net.imglib2.KDTree.SamplerNode
- get() - Method in class net.imglib2.KDTree.ValueNode
- get() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- get() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- get() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
- get() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
- get() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- get() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
- get() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- get() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- get() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- get() - Method in interface net.imglib2.Sampler
-
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the
Sampler
points at. - get() - Method in interface net.imglib2.type.BasePairType
- get() - Method in interface net.imglib2.type.BooleanType
- get() - Method in class net.imglib2.type.label.BasePairBitType
- get() - Method in class net.imglib2.type.label.BasePairCharType
- get() - Method in class net.imglib2.type.logic.BitType
- get() - Method in class net.imglib2.type.logic.BoolType
- get() - Method in class net.imglib2.type.numeric.ARGBType
- get() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- get() - Method in class net.imglib2.type.numeric.integer.ByteType
- get() - Method in class net.imglib2.type.numeric.integer.IntType
- get() - Method in class net.imglib2.type.numeric.integer.LongType
- get() - Method in class net.imglib2.type.numeric.integer.ShortType
- get() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- get() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
- get() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
- get() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
- get() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- get() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- get() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
-
This method returns the value of the UnsignedLongType as a signed long.
- get() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- get() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- get() - Method in class net.imglib2.type.numeric.real.DoubleType
- get() - Method in class net.imglib2.type.numeric.real.FloatType
- get() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- get() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- get() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- get() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- get() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
- get() - Method in class net.imglib2.view.iteration.SlicingCursor
-
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the
Sampler
points at. - get() - Method in class net.imglib2.view.MixedRandomAccess
- get() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- get() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- get() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- get() - Method in class net.imglib2.view.SlicingRandomAccess
- get() - Method in class net.imglib2.view.StackView.DefaultRA
- get() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- get() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- get() - Method in class net.imglib2.view.TransformRandomAccess
- get() - Method in class net.imglib2.view.TranslationRandomAccess
- get() - Method in class net.imglib2.Volatile
- get(int) - Method in class net.imglib2.img.list.AbstractListImg
- get(int) - Method in class net.imglib2.img.list.ListImg
- get(int, int) - Method in class net.imglib2.display.AbstractArrayColorTable
-
Gets an individual value from the color table.
- get(int, int) - Method in interface net.imglib2.display.ColorTable
-
Gets an individual value from the color table.
- get(int, int) - Method in class net.imglib2.display.ColorTable16
- get(int, int) - Method in class net.imglib2.display.ColorTable8
- get(long) - Method in interface net.imglib2.img.cell.LazyCellImg.Get
- get(long) - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
- get(long) - Method in class net.imglib2.img.list.AbstractLongListImg
- get(long) - Method in class net.imglib2.view.composite.AbstractComposite
- get(long) - Method in interface net.imglib2.view.composite.Composite
-
Get the ith scalar value of the
Composite
. - getA() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- getA() - Method in class net.imglib2.type.numeric.ARGBDoubleType
- getA() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- getA() - Method in interface net.imglib2.util.Pair
- getA() - Method in class net.imglib2.util.ValuePair
- getA() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- getAlpha() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
- getArrayFromValue(double, int) - Static method in class net.imglib2.util.Util
- getArrayFromValue(float, int) - Static method in class net.imglib2.util.Util
- getArrayFromValue(int, int) - Static method in class net.imglib2.util.Util
- getArrayFromValue(long, int) - Static method in class net.imglib2.util.Util
- getArrayOrCellImgFactory(Dimensions, int, T) - Static method in class net.imglib2.util.Util
- getArrayOrCellImgFactory(Dimensions, T) - Static method in class net.imglib2.util.Util
- getB() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- getB() - Method in class net.imglib2.type.numeric.ARGBDoubleType
- getB() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- getB() - Method in interface net.imglib2.util.Pair
- getB() - Method in class net.imglib2.util.ValuePair
- getB() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- getBigInteger() - Method in class net.imglib2.type.logic.BitType
- getBigInteger() - Method in class net.imglib2.type.logic.BoolType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.ByteType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.IntType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.LongType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.ShortType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
-
This method returns the unsigned representation of this UnsignedLongType as a
BigInteger
. - getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getBigInteger() - Method in interface net.imglib2.type.numeric.IntegerType
- getBinCount() - Method in interface net.imglib2.histogram.BinMapper1d
-
Returns the number of bins within this bin mapping distribution.
- getBinCount() - Method in class net.imglib2.histogram.Histogram1d
-
Returns the number of bins contained in the histogram.
- getBinCount() - Method in class net.imglib2.histogram.HistogramNd
-
Returns the number of bins contained in the histogram.
- getBinCount() - Method in class net.imglib2.histogram.Integer1dBinMapper
- getBinCount() - Method in class net.imglib2.histogram.Real1dBinMapper
- getBits() - Method in interface net.imglib2.display.ArrayColorTable
-
Gets the number of bits in each color component value.
- getBits() - Method in class net.imglib2.display.ColorTable16
- getBits() - Method in class net.imglib2.display.ColorTable8
- getBits() - Method in class net.imglib2.type.AbstractBit64Type
-
Writes the current "subLong" location of the LongAccess into the lower nBits bits of the long value Note that "long value" does not refer to math, it is just a way to help to return arbitrary values.
- getBitsPerPixel() - Method in class net.imglib2.type.logic.BitType
- getBitsPerPixel() - Method in class net.imglib2.type.logic.BoolType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.real.DoubleType
- getBitsPerPixel() - Method in class net.imglib2.type.numeric.real.FloatType
- getBitsPerPixel() - Method in interface net.imglib2.type.numeric.RealType
- getBitsPerPixel() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getBitsPerPixel(T) - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
- getByte() - Method in class net.imglib2.type.numeric.integer.GenericByteType
-
Returns the primitive byte value that is used to store this type.
- getCell() - Method in interface net.imglib2.img.cell.AbstractCellImg.CellImgSampler
- getCell() - Method in class net.imglib2.img.cell.CellCursor
- getCell() - Method in class net.imglib2.img.cell.CellLocalizingCursor
- getCell() - Method in class net.imglib2.img.cell.CellRandomAccess
- getCellDimensions(int[], int, Fraction) - Static method in class net.imglib2.img.cell.CellImgFactory
-
Computes cell size array by truncating or expanding
defaultCellDimensions
to lengthn
. - getCellDimensions(long[], long[], int[]) - Method in class net.imglib2.img.cell.CellGrid
-
From the position of a cell in the grid, compute the image position of the first pixel of the cell (the offset of the cell in image coordinates) and the dimensions of the cell.
- getCellDimensions(long, long[], int[]) - Method in class net.imglib2.img.cell.CellGrid
-
From the index of a cell in the grid, compute the image position of the first pixel of the cell (the offset of the cell in image coordinates) and the dimensions of the cell.
- getCellGrid() - Method in class net.imglib2.img.cell.AbstractCellImg
-
Get the
CellGrid
which describes the layout of theAbstractCellImg
. - getCellGridPositionFlat(long, long[]) - Method in class net.imglib2.img.cell.CellGrid
-
From the flattened index of a cell in the grid, compute the position of a cell in the grid.
- getCellPosition(long[], long[]) - Method in class net.imglib2.img.cell.CellGrid
-
Get the grid position of the cell containing the element at
position
. - getCellPosition(long[], Positionable) - Method in class net.imglib2.img.cell.CellGrid
-
Get the grid position of the cell containing the element at
position
. - getCells() - Method in class net.imglib2.img.cell.AbstractCellImg
-
Get the underlying image of cells which gives access to the individual
Cell
s through Cursors and RandomAccesses. - getCenterValue(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
-
Gets the data value associated with the center of a bin.
- getCenterValue(long, T) - Method in class net.imglib2.histogram.Histogram1d
-
Gets the value associated with the center of a bin.
- getCenterValue(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
- getCenterValue(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
- getCenterValues(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Gets the values associated with the center of a bin.
- getChar() - Method in class net.imglib2.type.label.BasePairCharType
- getChildren() - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
- getClipping() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
- getCodedSignedByte(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
- getCodedSignedByteChecked(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
- getCodedSignedInt(long) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
- getCodedSignedIntChecked(long) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
- getCodedSignedShort(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
- getCodedSignedShortChecked(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
- getCol(int, double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
extract column c of A into vector b.
- getCommonFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- getCommonRelativeFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- getComponentCount() - Method in class net.imglib2.display.AbstractArrayColorTable
- getComponentCount() - Method in interface net.imglib2.display.ColorTable
-
Gets the number of color components in the table (typically 3 for RGB or 4 for RGBA).
- getComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- getComponentInversion(boolean[]) - Method in interface net.imglib2.transform.integer.Mixed
-
Get an array indicating for each target component, whether the source component it is taken from should be inverted.
- getComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
- getComponentInversion(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- getComponentInversion(int) - Method in interface net.imglib2.transform.integer.Mixed
-
Get the d-th component of inversion vector (see
Mixed.getComponentInversion(boolean[])
). - getComponentInversion(int) - Method in class net.imglib2.transform.integer.MixedTransform
- getComponentMapping(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- getComponentMapping(int) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- getComponentMapping(int) - Method in interface net.imglib2.transform.integer.Mixed
-
Get the source dimension which is mapped to the d-th target dimension (see
Mixed.getComponentMapping(int[])
). - getComponentMapping(int) - Method in class net.imglib2.transform.integer.MixedTransform
- getComponentMapping(int) - Method in class net.imglib2.transform.integer.SlicingTransform
- getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- getComponentMapping(int[]) - Method in interface net.imglib2.transform.integer.Mixed
-
Get an array indicating for each target dimensions from which source dimension it is taken.
- getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.MixedTransform
- getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
- getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- getComponentZero(boolean[]) - Method in interface net.imglib2.transform.integer.Mixed
-
Get a boolean array indicating which target dimensions are _not_ taken from source dimensions.
- getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
- getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.SlicingTransform
- getComponentZero(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- getComponentZero(int) - Method in interface net.imglib2.transform.integer.Mixed
-
Get the d-th component of zeroing vector (see
Mixed.getComponentZero(boolean[])
). - getComponentZero(int) - Method in class net.imglib2.transform.integer.MixedTransform
- getComponentZero(int) - Method in class net.imglib2.transform.integer.SlicingTransform
- getConcatenableClass() - Method in interface net.imglib2.concatenate.Concatenable
- getConcatenableClass() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- getConcatenableClass() - Method in class net.imglib2.transform.integer.MixedTransform
- getConcatenableClass() - Method in class net.imglib2.transform.integer.SlicingTransform
- getConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform
- getConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- getConverter() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
- getConverter() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
- getConverter() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
- getConverter() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
- getConverter() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
- getCurrentSliceIndex() - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
- getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarCursor
- getCurrentSliceIndex() - Method in interface net.imglib2.img.planar.PlanarImg.PlanarContainerSampler
- getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
- getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
- getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
- getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarRandomAccess
- getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
- getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
- getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
- getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
- getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
- getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
- getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
- getCurrentStorageArray() - Method in interface net.imglib2.img.basictypeaccess.array.ArrayDataAccess
- getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.BooleanNtree
- getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.ByteNtree
- getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.CharNtree
- getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.DoubleNtree
- getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.FloatNtree
- getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.IntNtree
- getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.LongNtree
- getCurrentStorageNtree() - Method in interface net.imglib2.img.sparse.NtreeAccess
- getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.ShortNtree
- getData() - Method in class net.imglib2.display.awt.SignedByteDataBuffer
- getData() - Method in class net.imglib2.display.awt.SignedShortDataBuffer
- getData() - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- getData() - Method in class net.imglib2.display.screenimage.awt.ARGBScreenImage
-
The underlying array holding the data.
- getData() - Method in class net.imglib2.img.cell.Cell
-
Get the basic type array that stores this cells pixels.
- getData(int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
- getData(int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
- getData(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- getDenominator() - Method in class net.imglib2.util.Fraction
- getDestinationType() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
- getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
- getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
- getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
- getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
- getDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getDistance() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
-
Access the Euclidean distance between the reference location as used for the last search and the nearest neighbor, ordered by square Euclidean distance.
- getDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- getDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- getDistance(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
-
Access the Euclidean distance between the reference location as used for the last search and the ith nearest neighbor, ordered by square Euclidean distance.
- getDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getDistance(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
-
Access the Euclidean distance between the reference location as used for the last search and the ith neighbor.
- getDistance(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- getDoublePosition(int) - Method in class net.imglib2.AbstractCursor
- getDoublePosition(int) - Method in class net.imglib2.AbstractCursorInt
- getDoublePosition(int) - Method in class net.imglib2.AbstractLocalizable
- getDoublePosition(int) - Method in class net.imglib2.AbstractLocalizableInt
- getDoublePosition(int) - Method in class net.imglib2.AbstractRealLocalizable
- getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
- getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.iterator.IntervalIterator
- getDoublePosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- getDoublePosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
- getDoublePosition(int) - Method in class net.imglib2.KDTree.KDTreeCursor
- getDoublePosition(int) - Method in class net.imglib2.KDTreeNode
- getDoublePosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- getDoublePosition(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- getDoublePosition(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- getDoublePosition(int) - Method in interface net.imglib2.RealLocalizable
-
Return the current position in a given dimension.
- getDoublePosition(int) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- getDoublePosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Return the current position in a given dimension.
- getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- getDoublePosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
- getDoublePosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- getDoublePosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- getDoublePosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
- getEfficientIterableInterval(Interval, RandomAccessible<S>) - Static method in class net.imglib2.view.iteration.IterableTransformBuilder
- getEfficientRandomAccessible(Interval, RandomAccessible<S>) - Static method in class net.imglib2.view.TransformBuilder
-
Get a RandomAccessible which provides RandomAccess to the specified
interval
ofrandomAccessible
. - getElem(int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
- getElem(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- getElem(int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
- getElem(int, int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
- getElem(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- getElemDouble(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- getElemDouble(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- getElemFloat(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- getElemFloat(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- getEntitiesPerPixel() - Method in class net.imglib2.type.AbstractBitType
- getEntitiesPerPixel() - Method in class net.imglib2.type.label.BasePairCharType
- getEntitiesPerPixel() - Method in class net.imglib2.type.logic.BitType
- getEntitiesPerPixel() - Method in interface net.imglib2.type.NativeType
-
Get the number of entities in the storage array required to store one pixel value.
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.ARGBType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.real.DoubleType
- getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.real.FloatType
- getExponent() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- getFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- getFloatPosition(int) - Method in class net.imglib2.AbstractCursor
- getFloatPosition(int) - Method in class net.imglib2.AbstractCursorInt
- getFloatPosition(int) - Method in class net.imglib2.AbstractLocalizable
- getFloatPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
- getFloatPosition(int) - Method in class net.imglib2.AbstractRealLocalizable
- getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
- getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
- getFloatPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- getFloatPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
- getFloatPosition(int) - Method in class net.imglib2.KDTree.KDTreeCursor
- getFloatPosition(int) - Method in class net.imglib2.KDTreeNode
- getFloatPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- getFloatPosition(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- getFloatPosition(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- getFloatPosition(int) - Method in interface net.imglib2.RealLocalizable
-
Return the current position in a given dimension.
- getFloatPosition(int) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- getFloatPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Return the current position in a given dimension.
- getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- getFloatPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
- getFloatPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- getFloatPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- getFloatPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
- getFullViewIterableInterval() - Method in class net.imglib2.view.IntervalView
- getG() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- getG() - Method in class net.imglib2.type.numeric.ARGBDoubleType
- getG() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- getGridDimensions() - Method in class net.imglib2.img.cell.CellGrid
- getImaginaryDouble() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- getImaginaryDouble() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- getImaginaryDouble() - Method in interface net.imglib2.type.numeric.ComplexType
- getImaginaryDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getImaginaryDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getImaginaryDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- getImaginaryDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getImaginaryFloat() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- getImaginaryFloat() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- getImaginaryFloat() - Method in interface net.imglib2.type.numeric.ComplexType
- getImaginaryFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getImaginaryFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getImaginaryFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- getImaginaryFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getImg() - Method in interface net.imglib2.img.WrappedImg
- getImgDimensions() - Method in class net.imglib2.img.cell.CellGrid
-
Get the number of pixels in each dimension as a new long[].
- getIndex() - Method in class net.imglib2.iterator.IntervalIterator
- getIndex() - Method in class net.imglib2.type.AbstractBitType
- getIndex() - Method in class net.imglib2.type.AbstractNativeType
- getIndex() - Method in class net.imglib2.type.logic.BitType
- getIndex() - Method in interface net.imglib2.type.NativeType
-
Get the current index into the current data array.
- getIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- getIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- getIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- getIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- getIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- getIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- getIndex() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- getIndex() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- getIndex() - Method in class net.imglib2.type.numeric.real.DoubleType
- getIndex() - Method in class net.imglib2.type.numeric.real.FloatType
- getIndex(int[]) - Method in class net.imglib2.img.planar.PlanarImg
-
For a given ≥2d location, estimate the pixel index in the stack slice.
- getInt() - Method in class net.imglib2.type.numeric.integer.GenericIntType
-
Returns the primitive int value that is used to store this type.
- getInteger() - Method in class net.imglib2.type.logic.BitType
- getInteger() - Method in class net.imglib2.type.logic.BoolType
- getInteger() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getInteger() - Method in class net.imglib2.type.numeric.integer.ByteType
- getInteger() - Method in class net.imglib2.type.numeric.integer.IntType
- getInteger() - Method in class net.imglib2.type.numeric.integer.LongType
- getInteger() - Method in class net.imglib2.type.numeric.integer.ShortType
- getInteger() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
Return the lowest 32 bits, like
BigInteger.intValue()
. - getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getInteger() - Method in interface net.imglib2.type.numeric.IntegerType
- getIntegerLong() - Method in class net.imglib2.type.logic.BitType
- getIntegerLong() - Method in class net.imglib2.type.logic.BoolType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.ByteType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.IntType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.LongType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.ShortType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
Return the lowest 64 bits, like
BigInteger.intValue()
. - getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getIntegerLong() - Method in interface net.imglib2.type.numeric.IntegerType
- getInterpolatorFactory() - Method in class net.imglib2.interpolation.Interpolant
- getInterval() - Method in class net.imglib2.transform.integer.BoundingBox
- getIntPosition(int) - Method in class net.imglib2.AbstractCursor
- getIntPosition(int) - Method in class net.imglib2.AbstractLocalizable
- getIntPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
- getIntPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
- getIntPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- getIntPosition(int) - Method in class net.imglib2.img.array.AbstractArrayCursor
- getIntPosition(int) - Method in class net.imglib2.img.list.ListCursor
- getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor
- getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor1D
- getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor2D
- getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Return the current position in a given dimension.
- getIntPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- getIntPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
- getIntPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- getIntPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
- getIntPosition(int) - Method in interface net.imglib2.Localizable
-
Return the current position in a given dimension.
- getIntPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- getIntPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- getIntPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- getIntPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- getIntPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- getIntPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- getIntPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Return the current position in a given dimension.
- getIntPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- getIntPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- getIntPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- getIntPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
- getIntPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- getIntPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- getIntPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
- getInverseLutCopy() - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- getK() - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
-
Get the of k nearest neighbor points used in this search
- getK() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getK() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getLength() - Method in interface net.imglib2.display.ColorTable
-
Gets the number of elements for each color component in the table.
- getLength() - Method in class net.imglib2.display.ColorTable16
- getLength() - Method in class net.imglib2.display.ColorTable8
- getLong() - Method in class net.imglib2.type.numeric.integer.GenericLongType
-
Returns the primitive long value that is used to store this type.
- getLongPosition(int) - Method in class net.imglib2.AbstractCursorInt
- getLongPosition(int) - Method in class net.imglib2.AbstractLocalizable
- getLongPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
- getLongPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
- getLongPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- getLongPosition(int) - Method in class net.imglib2.img.cell.CellCursor
- getLongPosition(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- getLongPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- getLongPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
- getLongPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- getLongPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
- getLongPosition(int) - Method in interface net.imglib2.Localizable
-
Return the current position in a given dimension.
- getLongPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- getLongPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- getLongPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- getLongPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- getLongPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- getLongPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- getLongPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Return the current position in a given dimension.
- getLongPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- getLongPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- getLongPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- getLongPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
- getLongPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- getLongPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- getLongPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
- getLowerBound(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
-
Gets the data value associated with the left edge of a bin.
- getLowerBound(long, T) - Method in class net.imglib2.histogram.Histogram1d
-
Gets the value associated with the left edge of a bin.
- getLowerBound(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
- getLowerBound(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
- getLowerBounds(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Gets the values associated with the left edge of a bin.
- getLUT() - Method in class net.imglib2.converter.RealLUTConverter
- getLutCopy() - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- getMatrix() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- getMatrix() - Method in interface net.imglib2.transform.integer.Mixed
-
Get the matrix that transforms homogeneous source points to homogeneous target points.
- getMatrix() - Method in class net.imglib2.transform.integer.MixedTransform
-
Get the matrix that transforms homogeneous source points to homogeneous target points.
- getMatrix() - Method in class net.imglib2.transform.integer.SlicingTransform
-
Get the matrix that transforms homogeneous source points to homogeneous target points.
- getMatrix() - Method in class net.imglib2.transform.integer.TranslationTransform
-
Get the matrix that transforms homogeneous source points to homogeneous target points.
- getMatrix() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- getMax() - Method in class net.imglib2.display.AbstractLinearRange
- getMax() - Method in interface net.imglib2.display.LinearRange
- getMaxBigIntegerValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
The true maximum value, unlike
Unsigned128BitType.getMaxValue()
which cannot represent it in adouble
. - getMaxBigIntegerValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
-
Returns the true maximum value as a BigInteger, since it cannot be precisely represented as a
double
. - getMaxValue() - Method in class net.imglib2.type.logic.BitType
- getMaxValue() - Method in class net.imglib2.type.logic.BoolType
- getMaxValue() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
-
The maximum value that can be stored is
Math.pow(2, nBits) -1
. - getMaxValue() - Method in class net.imglib2.type.numeric.integer.ByteType
- getMaxValue() - Method in class net.imglib2.type.numeric.integer.IntType
- getMaxValue() - Method in class net.imglib2.type.numeric.integer.LongType
- getMaxValue() - Method in class net.imglib2.type.numeric.integer.ShortType
- getMaxValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
The maximum value that can be stored is
Math.pow(2, 128) -1
, which cannot be represented with precision using a double - getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
-
The maximum value that can be stored is
Math.pow( 2, 64 ) - 1
, which can't be represented with exact precision using a double - getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
-
The maximum value that can be stored is
Math.pow(2, nBits) -1
. - getMaxValue() - Method in class net.imglib2.type.numeric.real.DoubleType
- getMaxValue() - Method in class net.imglib2.type.numeric.real.FloatType
- getMaxValue() - Method in interface net.imglib2.type.numeric.RealType
- getMaxValue() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getMin() - Method in class net.imglib2.display.AbstractLinearRange
- getMin() - Method in interface net.imglib2.display.LinearRange
- getMinFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- getMinIncrement() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getMinIncrement() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- getMinIncrement() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getMinIncrement() - Method in class net.imglib2.type.numeric.real.DoubleType
- getMinIncrement() - Method in class net.imglib2.type.numeric.real.FloatType
- getMinIncrement() - Method in interface net.imglib2.type.numeric.RealType
- getMinIncrement() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getMinValue() - Method in class net.imglib2.type.logic.BitType
- getMinValue() - Method in class net.imglib2.type.logic.BoolType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.ByteType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.IntType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.LongType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.ShortType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getMinValue() - Method in class net.imglib2.type.numeric.real.DoubleType
- getMinValue() - Method in class net.imglib2.type.numeric.real.FloatType
- getMinValue() - Method in interface net.imglib2.type.numeric.RealType
- getMinValue() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getNative(int, int) - Method in interface net.imglib2.display.ArrayColorTable
-
Gets an individual value from the color table.
- getNative(int, int) - Method in class net.imglib2.display.ColorTable16
- getNative(int, int) - Method in class net.imglib2.display.ColorTable8
- getNumerator() - Method in class net.imglib2.util.Fraction
- getOutOfBoundsFactory() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
- getOutOfBoundsFactory() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
- getPhaseDouble() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- getPhaseDouble() - Method in interface net.imglib2.type.numeric.ComplexType
- getPhaseDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getPhaseDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getPhaseDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- getPhaseDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getPhaseFloat() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- getPhaseFloat() - Method in interface net.imglib2.type.numeric.ComplexType
- getPhaseFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getPhaseFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getPhaseFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- getPhaseFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getPlane(int) - Method in interface net.imglib2.img.basictypeaccess.PlanarAccess
- getPlane(int) - Method in class net.imglib2.img.planar.PlanarImg
- getPosition() - Method in class net.imglib2.img.sparse.NtreeCursor
- getPosition() - Method in interface net.imglib2.img.sparse.NtreeImg.PositionProvider
- getPosition() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- getPosition() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getPosition() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getPosition() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
-
Access the position of the nearest neighbor, ordered by square Euclidean distance.
- getPosition() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- getPosition() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- getPosition(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
-
Access the position of the ith nearest neighbor, ordered by square Euclidean distance.
- getPosition(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getPosition(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getPosition(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
-
Access the position of the ith neighbor within radius.
- getPosition(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- getPowerDouble() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- getPowerDouble() - Method in interface net.imglib2.type.numeric.ComplexType
- getPowerDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getPowerDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getPowerDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- getPowerDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getPowerFloat() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- getPowerFloat() - Method in interface net.imglib2.type.numeric.ComplexType
- getPowerFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getPowerFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getPowerFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- getPowerFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getPreConcatenableClass() - Method in interface net.imglib2.concatenate.PreConcatenable
- getPreConcatenableClass() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- getPreConcatenableClass() - Method in class net.imglib2.transform.integer.MixedTransform
- getPreConcatenableClass() - Method in class net.imglib2.transform.integer.SlicingTransform
- getPreConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform
- getPreConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- getR() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- getR() - Method in class net.imglib2.type.numeric.ARGBDoubleType
- getR() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- getRatio() - Method in class net.imglib2.util.Fraction
- getRealDouble() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- getRealDouble() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- getRealDouble() - Method in interface net.imglib2.type.numeric.ComplexType
- getRealDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getRealDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- getRealDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getRealDouble() - Method in class net.imglib2.type.numeric.real.DoubleType
- getRealDouble() - Method in class net.imglib2.type.numeric.real.FloatType
- getRealDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getRealFloat() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- getRealFloat() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- getRealFloat() - Method in interface net.imglib2.type.numeric.ComplexType
- getRealFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- getRealFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- getRealFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- getRealFloat() - Method in class net.imglib2.type.numeric.real.DoubleType
- getRealFloat() - Method in class net.imglib2.type.numeric.real.FloatType
- getRealFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- getReferenceDimension() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- getResampled(int, int, int) - Method in class net.imglib2.display.AbstractArrayColorTable
-
Gets an individual value from a color table with given number of bins.
- getResampled(int, int, int) - Method in interface net.imglib2.display.ColorTable
-
Gets an individual value from a color table with given number of bins.
- getResampled(int, int, int) - Method in class net.imglib2.display.ColorTable16
- getResampled(int, int, int) - Method in class net.imglib2.display.ColorTable8
- getRoot() - Method in class net.imglib2.KDTree
-
Get the root node.
- getRootNode() - Method in class net.imglib2.img.sparse.Ntree
-
Returns the root node of the ntree
- getRow(int, double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
extract row r of A into vector b.
- getSampler() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getSampler() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getSampler() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
-
Access the data of the nearest neighbor.
- getSampler() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- getSampler() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- getSampler(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
-
Access the data of the ith nearest neighbor, ordered by square Euclidean distance.
- getSampler(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getSampler(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getSampler(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
-
Access the data of the ith neighbor within radius.
- getSampler(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- getShear() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- getShear() - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
- getShear() - Method in class net.imglib2.transform.integer.shear.ShearTransform
- getShearDimension() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- getShort() - Method in class net.imglib2.type.numeric.integer.GenericShortType
-
Returns the primitive short value that is used to store this type.
- getSource() - Method in class net.imglib2.AbstractWrappedRealInterval
- getSource() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
- getSource() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
- getSource() - Method in class net.imglib2.interpolation.Interpolant
- getSource() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
- getSource() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
- getSource() - Method in class net.imglib2.view.IntervalView
-
Gets the underlying source
RandomAccessible
. - getSource() - Method in class net.imglib2.view.MixedTransformView
- getSource() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
- getSource() - Method in class net.imglib2.view.SubsampleView
- getSource() - Method in interface net.imglib2.view.TransformedRandomAccessible
-
Get the source of the TransformedRandomAccessible.
- getSource() - Method in class net.imglib2.view.TransformView
- getSourceSlices() - Method in class net.imglib2.view.StackView
-
Get the source slices that are stacked in this
StackView
. - getSplitCoordinate() - Method in class net.imglib2.KDTreeNode
-
Get the position along
KDTreeNode.getSplitDimension()
where this node divides the space. - getSplitDimension() - Method in class net.imglib2.KDTreeNode
-
Get the dimension along which this node divides the space.
- getSquareDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getSquareDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getSquareDistance() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
-
Access the square Euclidean distance between the reference location as used for the last search and the nearest neighbor, ordered by square Euclidean distance.
- getSquareDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- getSquareDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- getSquareDistance(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
-
Access the square Euclidean distance between the reference location as used for the last search and the ith nearest neighbor, ordered by square Euclidean distance.
- getSquareDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- getSquareDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- getSquareDistance(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
-
Access the square Euclidean distance between the reference location as used for the last search and the ith neighbor.
- getSquareDistance(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- getStackAccessMode() - Method in class net.imglib2.view.StackView
- getSteps() - Method in class net.imglib2.view.SubsampleView
- getSuggestedKernelDiameter(double) - Static method in class net.imglib2.util.Util
- getSum() - Method in class net.imglib2.util.RealSum
-
Get the current sum by summing up all intermediate sums.
- getTransformToSource() - Method in class net.imglib2.view.MixedTransformView
- getTransformToSource() - Method in interface net.imglib2.view.TransformedRandomAccessible
-
Get the transformation from view coordinates into
source
coordinates. - getTransformToSource() - Method in class net.imglib2.view.TransformView
- getTranslation(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- getTranslation(int) - Method in interface net.imglib2.transform.integer.Mixed
-
Get the d-th component of translation (see
Mixed.getTranslation(long[])
). - getTranslation(int) - Method in class net.imglib2.transform.integer.MixedTransform
- getTranslation(int) - Method in class net.imglib2.transform.integer.SlicingTransform
- getTranslation(int) - Method in class net.imglib2.transform.integer.TranslationTransform
- getTranslation(int) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- getTranslation(long[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- getTranslation(long[]) - Method in interface net.imglib2.transform.integer.Mixed
-
Get the translation.
- getTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
- getTranslation(long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
- getTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
- getTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- getTypeFromInterval(F) - Static method in class net.imglib2.util.Util
-
Gets an instance of T from the
RandomAccessibleInterval
by querying the value at the min coordinate - getTypeFromRealInterval(F) - Static method in class net.imglib2.util.Util
-
Gets an instance of T from the
RandomAccessibleInterval
by querying the value at the min coordinate - getUnsignedByte(byte) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
- getUnsignedInt(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
- getUnsignedShort(short) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
- getUpperBound(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
-
Gets the data value associated with the right edge of a bin.
- getUpperBound(long, T) - Method in class net.imglib2.histogram.Histogram1d
-
Gets the value associated with the right edge of the bin.
- getUpperBound(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
- getUpperBound(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
- getUpperBounds(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Gets the values associated with the right edge of a bin.
- getValue() - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
- getValue() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
- getValue() - Method in class net.imglib2.type.numeric.integer.GenericByteType
-
Deprecated.Use
GenericByteType.getByte()
instead. - getValue() - Method in class net.imglib2.type.numeric.integer.GenericIntType
-
Deprecated.Use
GenericIntType.getInt()
instead. - getValue() - Method in class net.imglib2.type.numeric.integer.GenericLongType
-
Deprecated.Use
GenericLongType.getLong()
instead. - getValue() - Method in class net.imglib2.type.numeric.integer.GenericShortType
-
Deprecated.Use
GenericShortType.getShort()
instead. - getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
- getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
- getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
- getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
- getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
- getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
- getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
- getValue(int) - Method in interface net.imglib2.img.basictypeaccess.ByteAccess
- getValue(int) - Method in interface net.imglib2.img.basictypeaccess.CharAccess
- getValue(int) - Method in interface net.imglib2.img.basictypeaccess.DoubleAccess
- getValue(int) - Method in interface net.imglib2.img.basictypeaccess.FloatAccess
- getValue(int) - Method in interface net.imglib2.img.basictypeaccess.IntAccess
- getValue(int) - Method in interface net.imglib2.img.basictypeaccess.LongAccess
- getValue(int) - Method in interface net.imglib2.img.basictypeaccess.ShortAccess
- getValue(int) - Method in class net.imglib2.img.sparse.BooleanNtree
- getValue(int) - Method in class net.imglib2.img.sparse.ByteNtree
- getValue(int) - Method in class net.imglib2.img.sparse.CharNtree
- getValue(int) - Method in class net.imglib2.img.sparse.DoubleNtree
- getValue(int) - Method in class net.imglib2.img.sparse.FloatNtree
- getValue(int) - Method in class net.imglib2.img.sparse.IntNtree
- getValue(int) - Method in class net.imglib2.img.sparse.LongNtree
- getValue(int) - Method in class net.imglib2.img.sparse.NtreeIntAccess
- getValue(int) - Method in class net.imglib2.img.sparse.ShortNtree
- getValues() - Method in class net.imglib2.display.AbstractArrayColorTable
- getValues() - Method in interface net.imglib2.display.ArrayColorTable
-
Gets a copy of the entire color table.
- getWeight(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
- globalPositionToIndex(long[]) - Method in class net.imglib2.img.cell.Cell
-
Compute the index in the underlying flat array of this cell which corresponds to the specified global
position
. - gLog(double, double) - Static method in class net.imglib2.util.Util
- gLog(float, float) - Static method in class net.imglib2.util.Util
- gLogInv(double, double) - Static method in class net.imglib2.util.Util
- gLogInv(float, float) - Static method in class net.imglib2.util.Util
- green(int) - Static method in class net.imglib2.type.numeric.ARGBType
- GREEN - Static variable in interface net.imglib2.display.ColorTable
- grid - Variable in class net.imglib2.img.cell.AbstractCellImg
- grid - Variable in class net.imglib2.img.cell.CellRandomAccess
- gridDimension(int) - Method in class net.imglib2.img.cell.CellGrid
- gridDimensions(long[]) - Method in class net.imglib2.img.cell.CellGrid
H
- hasFullSourceMapping() - Method in class net.imglib2.transform.integer.MixedTransform
-
Check whether the transforms has a full mapping of source to target components (no source component is discarded).
- hasFullSourceMapping() - Method in class net.imglib2.transform.integer.SlicingTransform
-
Check whether the transforms has a full mapping of source to target components (no source component is discarded).
- hashCode() - Method in class net.imglib2.img.cell.CellGrid
- hashCode() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- hashCode() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- hashCode() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- hashCode() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- hashCode() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- hashCode() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- hashCode() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- hashCode() - Method in class net.imglib2.type.numeric.integer.LongType
- hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- hashCode() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- hashCode() - Method in class net.imglib2.type.numeric.real.FloatType
- hashCode() - Method in class net.imglib2.util.ValuePair
- hasNext() - Method in class net.imglib2.converter.AbstractConvertedCursor
- hasNext() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
- hasNext() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
- hasNext() - Method in class net.imglib2.img.array.AbstractArrayCursor
- hasNext() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Returns true if another step forward is possible.
- hasNext() - Method in class net.imglib2.img.cell.CellCursor
- hasNext() - Method in class net.imglib2.img.cell.CellLocalizingCursor
- hasNext() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- hasNext() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- hasNext() - Method in class net.imglib2.img.list.ListCursor
- hasNext() - Method in class net.imglib2.img.list.ListLocalizingCursor
- hasNext() - Method in class net.imglib2.img.planar.PlanarCursor
-
Note: This test is fragile in a sense that it returns true for elements after the last element as well.
- hasNext() - Method in class net.imglib2.img.planar.PlanarCursor1D
- hasNext() - Method in class net.imglib2.img.planar.PlanarCursor2D
- hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
-
Note: This test is fragile in a sense that it returns true for elements after the last element as well.
- hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
- hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
- hasNext() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Returns true if another step forward is possible.
- hasNext() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
-
Returns true if another step forward is possible.
- hasNext() - Method in interface net.imglib2.Iterator
-
Returns true if another step forward is possible.
- hasNext() - Method in class net.imglib2.iterator.IntervalIterator
- hasNext() - Method in class net.imglib2.KDTree.KDTreeCursor
- hasNext() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- hasNext() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- hasNext() - Method in class net.imglib2.view.iteration.SlicingCursor
-
Returns true if another step forward is possible.
- hasNext() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- hasTails() - Method in interface net.imglib2.histogram.BinMapper1d
-
Returns true if this bin mapping has bins on the ends of the distribution that count out of bounds values.
- hasTails() - Method in class net.imglib2.histogram.Histogram1d
-
Returns true if the histogram has tail bins at both ends which count extreme values.
- hasTails() - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if the histogram has tail bins which count extreme values for one or more dimensions
- hasTails() - Method in class net.imglib2.histogram.Integer1dBinMapper
- hasTails() - Method in class net.imglib2.histogram.Real1dBinMapper
- hasTails(int) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if the histogram has tail bins which count extreme values for the given dimension.
- Histogram1d<T> - Class in net.imglib2.histogram
-
A Histogram1d is a histogram that tracks up to four kinds of values: 1) values in the center of the distribution 2) values to the left of the center of the distribution (lower tail) 3) values to the right of the center of the distribution (upper tail) 4) values outside the other areas
- Histogram1d(Iterable<T>, BinMapper1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
-
Construct a histogram from an iterable set of data and a bin mapping algorithm.
- Histogram1d(BinMapper1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
-
Construct a histogram from a bin mapping algorithm.
- Histogram1d(Histogram1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
-
Construct a histogram whose bin mappings match another histogram.
- histogramNd(double[], double[], long[], boolean[]) - Static method in class net.imglib2.histogram.Real1dBinMapper
-
This is a convenience method for creating a
HistogramNd
from inputs that describe a set of real 1-d based bin mappers. - histogramNd(long[], long[], boolean[]) - Static method in class net.imglib2.histogram.Integer1dBinMapper
-
This is a convenience method for creating a
HistogramNd
from inputs that describe a set of integer 1-d based bin mappers. - HistogramNd<T> - Class in net.imglib2.histogram
-
A HistogramNd is an n-dimensional histogram that tracks up to four kinds of values: 1) values in the center of the distribution 2) values to the left of the center of the distribution (lower tail) 3) values to the right of the center of the distribution (upper tail) 4) values outside the other areas
- HistogramNd(Iterable<List<T>>, List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
-
Construct a histogram from an iterable set of data and a list of bin mapping algorithms.
- HistogramNd(List<Iterable<T>>, List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
-
Construct a histogram from an iterable set of data and a list of bin mapping algorithms.
- HistogramNd(List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
-
Construct a histogram from a list of bin mapping algorithms.
- HistogramNd(HistogramNd<T>) - Constructor for class net.imglib2.histogram.HistogramNd
-
Construct a histogram whose bin mappings match another histogram.
- hyperSlice(RandomAccessible<T>, int, long) - Static method in class net.imglib2.view.Views
-
take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos.
- hyperSlice(RandomAccessibleInterval<T>, int, long) - Static method in class net.imglib2.view.Views
-
take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos.
- HyperSlice<T> - Class in net.imglib2.view
- HyperSlice(RandomAccessible<T>, int[], long[]) - Constructor for class net.imglib2.view.HyperSlice
-
Create a new HyperSlice at a position.
- HyperSlice.HyperSliceRandomAccess - Class in net.imglib2.view
- HyperSliceRandomAccess() - Constructor for class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- HyperSliceRandomAccess(Interval) - Constructor for class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- hyperSlices(RandomAccessible<T>, int...) - Static method in class net.imglib2.view.Views
-
Provide an (n + m)-dimensional
RandomAccessible
of T as an m-dimensionalRandomAccessible
of n-dimensionalRandomAccessibles
of T. - HyperSlicesView<T> - Class in net.imglib2.view
- HyperSlicesView(RandomAccessible<T>, int...) - Constructor for class net.imglib2.view.HyperSlicesView
- HyperSlicesView.HyperSlicesViewRandomAccess - Class in net.imglib2.view
- HyperSlicesViewRandomAccess() - Constructor for class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
I
- i - Variable in class net.imglib2.converter.CompositeChannelConverter
- i - Variable in class net.imglib2.type.AbstractBitType
- i - Variable in class net.imglib2.type.AbstractNativeType
- i - Variable in class net.imglib2.type.logic.BitType
- ignoredCount() - Method in class net.imglib2.histogram.Histogram1d
-
Returns the frequency count of values that were ignored because they could not be mapped to any bin.
- ignoredCount() - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of values that were ignored because they could not be mapped to any bin.
- image - Variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
- image() - Method in class net.imglib2.display.screenimage.awt.ARGBScreenImage
- image() - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
- image() - Method in interface net.imglib2.display.screenimage.awt.AWTScreenImage
- image() - Method in interface net.imglib2.display.screenimage.ScreenImage
- img - Variable in class net.imglib2.img.array.AbstractArrayCursor
-
Source image
- img - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
The underlying source
ArrayImg
. - img - Variable in class net.imglib2.type.AbstractBitType
- img - Variable in class net.imglib2.type.label.BasePairCharType
- img - Variable in class net.imglib2.type.logic.BitType
- img - Variable in class net.imglib2.type.numeric.ARGBType
- img - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleType
- img - Variable in class net.imglib2.type.numeric.complex.ComplexFloatType
- img - Variable in class net.imglib2.type.numeric.integer.GenericByteType
- img - Variable in class net.imglib2.type.numeric.integer.GenericIntType
- img - Variable in class net.imglib2.type.numeric.integer.GenericLongType
- img - Variable in class net.imglib2.type.numeric.integer.GenericShortType
- img - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
- img - Variable in class net.imglib2.type.numeric.NativeARGBDoubleType
- img - Variable in class net.imglib2.type.numeric.real.DoubleType
- img - Variable in class net.imglib2.type.numeric.real.FloatType
- Img<T> - Interface in net.imglib2.img
-
An
Img
is aRandomAccessibleInterval
that has its min at 0n and its max positive. - imgDimension(int) - Method in class net.imglib2.img.cell.CellGrid
-
Get the number of pixels in a given dimension d.
- imgDimensions(long[]) - Method in class net.imglib2.img.cell.CellGrid
-
Write the number of pixels in each dimension into long[].
- imgFactory(Supplier<S>) - Method in class net.imglib2.img.ImgFactory
-
Creates the same
ImgFactory
for a different generic parameter if possible. - imgFactory(S) - Method in class net.imglib2.img.array.ArrayImgFactory
- imgFactory(S) - Method in class net.imglib2.img.cell.CellImgFactory
- imgFactory(S) - Method in class net.imglib2.img.ImgFactory
-
Creates the same
ImgFactory
for a different generic parameter if possible. - imgFactory(S) - Method in class net.imglib2.img.list.ListImgFactory
- imgFactory(S) - Method in class net.imglib2.img.planar.PlanarImgFactory
- imgFactory(S) - Method in class net.imglib2.img.sparse.NtreeImgFactory
- ImgFactory<T> - Class in net.imglib2.img
-
TODO
- ImgFactory() - Constructor for class net.imglib2.img.ImgFactory
- ImgLibException - Exception in net.imglib2.exception
- ImgLibException() - Constructor for exception net.imglib2.exception.ImgLibException
- ImgLibException(Object, String) - Constructor for exception net.imglib2.exception.ImgLibException
- ImgLibException(String) - Constructor for exception net.imglib2.exception.ImgLibException
- ImgLibException(Throwable) - Constructor for exception net.imglib2.exception.ImgLibException
- ImgUtil - Class in net.imglib2.util
-
This class contains static methods for copying image data to and from Img instances.
- ImgUtil() - Constructor for class net.imglib2.util.ImgUtil
- ImgView<T extends Type<T>> - Class in net.imglib2.img
-
Allows a
RandomAccessibleInterval
to be treated as anImg
. - ImgView(RandomAccessibleInterval<T>, ImgFactory<T>) - Constructor for class net.imglib2.img.ImgView
-
Deprecated.
- inc - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- inc() - Method in class net.imglib2.type.logic.BitType
- inc() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- inc() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- inc() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- inc() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- inc() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- inc() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- inc() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- inc() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- inc() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- inc() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- inc() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- inc() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- inc() - Method in class net.imglib2.type.numeric.real.FloatType
- inc() - Method in interface net.imglib2.type.numeric.RealType
- inc() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- incIndex() - Method in class net.imglib2.type.AbstractBitType
- incIndex() - Method in class net.imglib2.type.AbstractNativeType
- incIndex() - Method in class net.imglib2.type.logic.BitType
- incIndex() - Method in interface net.imglib2.type.NativeType
-
Increment the index into the current data array.
- incIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- incIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- incIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- incIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- incIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- incIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- incIndex() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- incIndex() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- incIndex() - Method in class net.imglib2.type.numeric.real.DoubleType
- incIndex() - Method in class net.imglib2.type.numeric.real.FloatType
- incIndex(int) - Method in class net.imglib2.type.AbstractBitType
- incIndex(int) - Method in class net.imglib2.type.AbstractNativeType
- incIndex(int) - Method in class net.imglib2.type.logic.BitType
- incIndex(int) - Method in interface net.imglib2.type.NativeType
-
Increases the index into the current data array by
increment
steps. - incIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- incIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- incIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- incIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- incIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- incIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- incIndex(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- incIndex(int) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- incIndex(int) - Method in class net.imglib2.type.numeric.real.DoubleType
- incIndex(int) - Method in class net.imglib2.type.numeric.real.FloatType
- includesLowerBound(int, long) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if the given bin interval is closed on the left for the given dimension.
- includesLowerBound(long) - Method in interface net.imglib2.histogram.BinMapper1d
-
Returns true if values matching the left edge data value for a given bin are counted in the distribution.
- includesLowerBound(long) - Method in class net.imglib2.histogram.Histogram1d
-
Returns true if the given bin interval is closed on the left
- includesLowerBound(long) - Method in class net.imglib2.histogram.Integer1dBinMapper
- includesLowerBound(long) - Method in class net.imglib2.histogram.Real1dBinMapper
- includesLowerBounds(long[]) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if the given bin interval is closed on the left
- includesUpperBound(int, long) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if the given bin interval is closed on the right for the given dimension.
- includesUpperBound(long) - Method in interface net.imglib2.histogram.BinMapper1d
-
Returns true if values matching the right edge data value for a given bin are counted in the distribution.
- includesUpperBound(long) - Method in class net.imglib2.histogram.Histogram1d
-
Returns true if the given bin interval is closed on the right
- includesUpperBound(long) - Method in class net.imglib2.histogram.Integer1dBinMapper
- includesUpperBound(long) - Method in class net.imglib2.histogram.Real1dBinMapper
- includesUpperBounds(long[]) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if the given bin interval is closed on the right
- IncompatibleTypeException - Exception in net.imglib2.exception
-
Is thrown if a
Type
is not supported. - IncompatibleTypeException(Object, String) - Constructor for exception net.imglib2.exception.IncompatibleTypeException
- increment(long) - Method in class net.imglib2.histogram.Histogram1d
-
Directly increment a bin by position.
- increment(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Increments the frequency count of a specified bin.
- increment(long[]) - Method in class net.imglib2.histogram.HistogramNd
-
Directly increment a bin by position.
- increment(List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Directly increment a bin by value.
- increment(T) - Method in class net.imglib2.histogram.Histogram1d
-
Directly increment a bin by value.
- index - Variable in class net.imglib2.img.cell.CellCursor
-
The current index of the type.
- index - Variable in class net.imglib2.img.cell.CellLocalizingCursor
-
The current index of the type.
- index - Variable in class net.imglib2.img.cell.CellRandomAccess
-
The current index of the type.
- index - Variable in class net.imglib2.img.planar.PlanarCursor
-
The current index of the type.
- index - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
-
The current index of the type.
- index - Variable in class net.imglib2.iterator.IntervalIterator
- index - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
- index - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- indexToGlobalPosition(int, int) - Method in class net.imglib2.img.cell.Cell
- indexToGlobalPosition(int, int, int) - Method in class net.imglib2.img.planar.PlanarImg
-
Compute a global position from the index of a slice and an index within that slice.
- indexToGlobalPosition(int, int, int[]) - Method in class net.imglib2.img.planar.PlanarImg
-
Compute a global position from the index of a slice and an index within that slice.
- indexToGlobalPosition(int, long[]) - Method in class net.imglib2.img.cell.Cell
- indexToPosition(int, int[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(int, int[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(int, int[], int) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(int, int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(int, int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(int, int[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(long, long[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(long, long[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(long, long[], int) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(long, long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(long, long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(long, long[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPosition(long, Dimensions, Positionable) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(int, int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(int, int[], int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(int, int[], int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(int, int[], int[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(int, int[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(long, long[], long[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(long, long[], long[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(long, long[], long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(long, long[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
- indexToPositionWithOffset(long, long[], long[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
- int2long(int[]) - Static method in class net.imglib2.util.Util
- IntAccess - Interface in net.imglib2.img.basictypeaccess
-
TODO
- IntArray - Class in net.imglib2.img.basictypeaccess.array
- IntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.IntArray
- IntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.IntArray
- IntAWTScreenImage - Class in net.imglib2.display.screenimage.awt
-
A
AWTScreenImage
that is anArrayImg<ShortType, ShortArray>
. - IntAWTScreenImage(ArrayImg<IntType, IntArray>) - Constructor for class net.imglib2.display.screenimage.awt.IntAWTScreenImage
- IntAWTScreenImage(IntType, IntArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.IntAWTScreenImage
- Integer1dBinMapper<T extends IntegerType<T>> - Class in net.imglib2.histogram
-
Maps integer values into a 1-d set of bins.
- Integer1dBinMapper(long, long, boolean) - Constructor for class net.imglib2.histogram.Integer1dBinMapper
-
Specify a mapping of integral data from a user defined range into a specified number of bins.
- IntegerType<T extends IntegerType<T>> - Interface in net.imglib2.type.numeric
-
TODO
- Interpolant<T,F extends EuclideanSpace> - Class in net.imglib2.interpolation
-
A
RealRandomAccessible
that is generated through interpolation. - Interpolant(F, InterpolatorFactory<T, F>) - Constructor for class net.imglib2.interpolation.Interpolant
- interpolate(F, InterpolatorFactory<T, F>) - Static method in class net.imglib2.view.Views
-
Returns a
RealRandomAccessible
using interpolation - interpolatedValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- InterpolatorFactory<T,F> - Interface in net.imglib2.interpolation
- intersect(Interval, Interval) - Static method in class net.imglib2.util.Intervals
-
Compute the intersection of two intervals.
- intersect(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
-
Compute the intersection of two intervals.
- interval - Variable in class net.imglib2.view.iteration.IterableTransformBuilder
-
The interval which should be iterated.
- interval(RandomAccessible<T>, long[], long[]) - Static method in class net.imglib2.view.Views
-
Define an interval on a RandomAccessible.
- interval(RandomAccessible<T>, Interval) - Static method in class net.imglib2.view.Views
-
Define an interval on a RandomAccessible.
- Interval - Interface in net.imglib2
-
{x∈Zn|mind≤ xd≤maxd;d∈{0… n-1}}
- IntervalIndexer - Class in net.imglib2.util
-
N-dimensional data is often stored in a flat 1-dimensional array.
- IntervalIndexer() - Constructor for class net.imglib2.util.IntervalIndexer
- IntervalIterator - Class in net.imglib2.iterator
-
Use this class to iterate a virtual
Interval
in flat order, that is: row by row, plane by plane, cube by cube, ... - IntervalIterator(int[]) - Constructor for class net.imglib2.iterator.IntervalIterator
-
Iterates an
Interval
of the given dimensions with min= 0n - IntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.IntervalIterator
-
Iterates an
Interval
with given min and max. - IntervalIterator(long[]) - Constructor for class net.imglib2.iterator.IntervalIterator
-
Iterates an
Interval
of the given dimensions with min= 0n - IntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.IntervalIterator
-
Iterates an
Interval
with given min and max. - IntervalIterator(Interval) - Constructor for class net.imglib2.iterator.IntervalIterator
-
Iterates a given
Interval
. - Intervals - Class in net.imglib2.util
-
Convenience methods for manipulating
Intervals
. - Intervals() - Constructor for class net.imglib2.util.Intervals
- IntervalSampler<T> - Class in net.imglib2.display.projector.sampler
-
allows stepwise access to a preselected projected dimension.
- IntervalSampler(int, long, long) - Constructor for class net.imglib2.display.projector.sampler.IntervalSampler
- IntervalView<T> - Class in net.imglib2.view
-
IntervalView is a view that puts
Interval
boundaries on its sourceRandomAccessible
. - IntervalView(RandomAccessible<T>, long[], long[]) - Constructor for class net.imglib2.view.IntervalView
-
Create a view that defines an interval on a source.
- IntervalView(RandomAccessible<T>, Interval) - Constructor for class net.imglib2.view.IntervalView
-
Create a view that defines an interval on a source.
- IntNtree - Class in net.imglib2.img.sparse
-
IntAccess based on a
Ntree
<Integer>
. - IntNtree(long[], long[], int) - Constructor for class net.imglib2.img.sparse.IntNtree
-
Standard constructor called by factory
- ints(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- ints(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- ints(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- ints(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- IntType - Class in net.imglib2.type.numeric.integer
-
TODO
- IntType() - Constructor for class net.imglib2.type.numeric.integer.IntType
- IntType(int) - Constructor for class net.imglib2.type.numeric.integer.IntType
- IntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.IntType
- IntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.IntType
- inverse - Variable in class net.imglib2.transform.integer.SequentializeTransform
- inverse - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
- inverse - Variable in class net.imglib2.transform.integer.TranslationTransform
- inverse() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- inverse() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- inverse() - Method in class net.imglib2.transform.integer.SequentializeTransform
- inverse() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- inverse() - Method in class net.imglib2.transform.integer.TranslationTransform
- inverse() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- inverse() - Method in class net.imglib2.transform.InverseTransform
- inverse() - Method in interface net.imglib2.transform.InvertibleTransform
-
Get the inverse transform.
- InverseDistanceWeightingInterpolator<T extends RealType<T>> - Class in net.imglib2.interpolation.neighborsearch
-
RealRandomAccess
to aKNearestNeighborSearch
whose sample value is generated by weighting the k nearest neighbors of a query real coordinate by their inverse distance to an arbitrary power p. - InverseDistanceWeightingInterpolator(KNearestNeighborSearch<T>, double) - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
-
Creates a new
InverseDistanceWeightingInterpolator
based on aKNearestNeighborSearch
. - InverseDistanceWeightingInterpolatorFactory<T extends RealType<T>> - Class in net.imglib2.interpolation.neighborsearch
-
Factory for
InverseDistanceWeightingInterpolator
instances that work on aKNearestNeighborSearch
. - InverseDistanceWeightingInterpolatorFactory() - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
- InverseDistanceWeightingInterpolatorFactory(double) - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
- inverseLut - Variable in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- InverseShearTransform - Class in net.imglib2.transform.integer.shear
-
Backward implementation of the most simple case of a shear transform: coordinate[ shearDimension ] -= coordinate[ referenceDimension ]
- InverseShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.InverseShearTransform
- InverseShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.InverseShearTransform
-
Protected constructor for passing an inverse to avoid construction of unnecessary objects.
- InverseTransform - Class in net.imglib2.transform
-
Final implementation of the inverse of an
InvertibleTransform
that simply replaces apply by applyInverse and conversely. - InverseTransform(InvertibleTransform) - Constructor for class net.imglib2.transform.InverseTransform
- invert - Variable in class net.imglib2.transform.integer.MixedTransform
-
for each component of the target vector (before translation).
- invert() - Method in class net.imglib2.util.Fraction
-
Inverts this fraction by exchanging numerator and denominator
- invert3x3(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
Invert a 3x3 matrix given as row major double[] in place.
- invert3x3(double, double, double, double, double, double, double, double, double) - Static method in class net.imglib2.util.LinAlgHelpers
-
Invert a 3x3 matrix given as elements in row major order.
- invertAxis(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
-
Invert the d-axis.
- invertAxis(RandomAccessibleInterval<T>, int) - Static method in class net.imglib2.view.Views
-
Invert the d-axis.
- InvertibleTransform - Interface in net.imglib2.transform
-
Invertible transformation from Zn to Zm .
- invertSymmetric2x2(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
Inverts a (invertible) symmetric 2x2 matrix.
- invertSymmetric3x3(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
Inverts a (invertible) symmetric 3x3 matrix.
- isApproxEqual(double, double, double) - Static method in class net.imglib2.util.Util
- isApproxEqual(float, float, float) - Static method in class net.imglib2.util.Util
- isComponentMapping(Mixed) - Static method in class net.imglib2.view.TransformBuilder
- isComposite() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
-
Gets whether composite mode is enabled for all positions.
- isComposite() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
-
Gets whether composite mode is enabled for all positions.
- isComposite(int) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
-
Gets whether the given position index is included in composite values.
- isComposite(int) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
-
Gets whether the given position index is included in composite values.
- isDirty() - Method in interface net.imglib2.Dirty
- isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
- isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
- isEmpty(Interval) - Static method in class net.imglib2.util.Intervals
-
Check whether the given interval is empty, that is, the maximum is smaller than the minimum in some dimension.
- isEmpty(RealInterval) - Static method in class net.imglib2.util.Intervals
-
Check whether the given interval is empty, that is, the maximum is smaller than the minimum in some dimension.
- isIdentity(Mixed) - Static method in class net.imglib2.view.TransformBuilder
- isInLowerTail(int, T) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if a given value for a given dimension is mapped to the lower tail of the distribution.
- isInLowerTail(List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if a given set of values are mapped to the lower tail of the distribution.
- isInLowerTail(T) - Method in class net.imglib2.histogram.Histogram1d
-
Returns true if a given value is mapped to the lower tail of the distribution.
- isInMiddle(int, T) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if a given value for a given dimension is mapped to the middle of the distribution.
- isInMiddle(List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if a given set of values are mapped to the middle of the distribution.
- isInMiddle(T) - Method in class net.imglib2.histogram.Histogram1d
-
Returns true if a given value is mapped to the middle of the distribution.
- isInUpperTail(int, T) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if a given value for a given dimension is mapped to the upper tail of the distribution.
- isInUpperTail(List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if a given set of values are mapped to the upper tail of the distribution.
- isInUpperTail(T) - Method in class net.imglib2.histogram.Histogram1d
-
Returns true if a given value is mapped to the upper tail of the distribution.
- isNotLastCell - Variable in class net.imglib2.img.cell.CellCursor
-
Caches cursorOnCells.hasNext().
- isNotLastCell - Variable in class net.imglib2.img.cell.CellLocalizingCursor
-
Caches cursorOnCells.hasNext().
- isOutOfBounds - Variable in class net.imglib2.img.cell.CellRandomAccess
- isOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- isOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- isOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
- isOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- isOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- isOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- isOutOfBounds() - Method in interface net.imglib2.outofbounds.Bounded
-
True if located out of image bounds.
- isOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- isOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- isOutOfBounds() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- isOutside(int, T) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if a given value for a given dimension is outside the distribution.
- isOutside(List<T>) - Method in class net.imglib2.histogram.HistogramNd
-
Returns true if a given set of values are outside the distribution.
- isOutside(T) - Method in class net.imglib2.histogram.Histogram1d
-
Returns true if a given value is outside the distribution.
- isSlicing(Mixed) - Static method in class net.imglib2.view.TransformBuilder
- isTranslation(Mixed) - Static method in class net.imglib2.view.TransformBuilder
- isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
- isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
- isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
- isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
- isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
- isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
- isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
- isValid() - Method in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
- isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
- isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
- isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
- isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
- isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
- isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
- isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
- isValid() - Method in interface net.imglib2.img.basictypeaccess.volatiles.VolatileAccess
- isValid() - Method in class net.imglib2.Volatile
- isZeroMin(Interval) - Static method in class net.imglib2.view.Views
-
test whether the source interval starts at (0,0,...,0)
- iterable - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- iterable - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- iterable(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
-
Return an
IterableInterval
. - IterableInterval<T> - Interface in net.imglib2
-
An
IterableRealInterval
whose elements are located at integer coordinates. - IterableIntervalProjector2D<A,B> - Class in net.imglib2.display.projector
-
A general 2D Projector that uses two dimensions as input to create the 2D result.
- IterableIntervalProjector2D(int, int, RandomAccessible<A>, IterableInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.IterableIntervalProjector2D
-
creates a new 2D projector that samples a plain in the dimensions dimX, dimY.
- IterablePair<A,B> - Class in net.imglib2.util
-
An
Iterable
which is backed by two otherIterable
s, whose iteration produces aPair
of objects corresponding to those given by the two respective iterations of the backingIterable
s. - IterablePair(Iterable<A>, Iterable<B>) - Constructor for class net.imglib2.util.IterablePair
- IterableRandomAccessibleInterval<T> - Class in net.imglib2.view
-
Generates
Cursors
that iterate aRandomAccessibleInterval
in flat order, that is: row by row, plane by plane, cube by cube, ... - IterableRandomAccessibleInterval(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.view.IterableRandomAccessibleInterval
- IterableRealInterval<T> - Interface in net.imglib2
-
f:Rn∈[0,s]→T
- IterableTransformBuilder<T> - Class in net.imglib2.view.iteration
-
Simplifies View cascades to provide the most efficient
Cursor
. - IterableTransformBuilder(Interval, RandomAccessible<T>) - Constructor for class net.imglib2.view.iteration.IterableTransformBuilder
-
Create a new IterableTransformBuilder.
- iterationOrder() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
- iterationOrder() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- iterationOrder() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- iterationOrder() - Method in class net.imglib2.histogram.Histogram1d
- iterationOrder() - Method in class net.imglib2.histogram.HistogramNd
- iterationOrder() - Method in class net.imglib2.img.array.ArrayImg
- iterationOrder() - Method in class net.imglib2.img.cell.AbstractCellImg
- iterationOrder() - Method in class net.imglib2.img.list.AbstractListImg
- iterationOrder() - Method in class net.imglib2.img.list.AbstractLongListImg
- iterationOrder() - Method in class net.imglib2.img.planar.PlanarImg
- iterationOrder() - Method in class net.imglib2.img.sparse.NtreeImg
- iterationOrder() - Method in interface net.imglib2.IterableRealInterval
-
Returns the iteration order of this
IterableRealInterval
. - iterationOrder() - Method in class net.imglib2.KDTree
- iterationOrder() - Method in class net.imglib2.PointSampleList
- iterationOrder() - Method in class net.imglib2.RealPointSampleList
- iterationOrder() - Method in class net.imglib2.view.IntervalView
- iterationOrder() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
- iterator - Variable in class net.imglib2.view.composite.AbstractNumericComposite
- iterator() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
- iterator() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- iterator() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- iterator() - Method in class net.imglib2.histogram.Histogram1d
- iterator() - Method in class net.imglib2.histogram.HistogramNd
- iterator() - Method in class net.imglib2.img.AbstractImg
- iterator() - Method in class net.imglib2.KDTree
- iterator() - Method in class net.imglib2.PointSampleList
- iterator() - Method in class net.imglib2.RealPointSampleList
- iterator() - Method in class net.imglib2.util.IterablePair
- iterator() - Method in class net.imglib2.view.composite.AbstractNumericComposite
- iterator() - Method in class net.imglib2.view.IntervalView
- iterator() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
- Iterator - Interface in net.imglib2
-
The
Iterator
interface provides basic functionality for iterating over a set of elements.
J
- join(List<T>) - Static method in class net.imglib2.concatenate.ConcatenateUtils
-
Reduce a list of objects by iteratively pre/concatenating neighboring objects if they support it.
- jumpFwd(long) - Method in class net.imglib2.AbstractCursor
-
Highly recommended to override this with a more efficient version.
- jumpFwd(long) - Method in class net.imglib2.AbstractCursorInt
-
Highly recommended to override this with a more efficient version.
- jumpFwd(long) - Method in class net.imglib2.AbstractLocalizingCursor
- jumpFwd(long) - Method in class net.imglib2.AbstractLocalizingCursorInt
- jumpFwd(long) - Method in class net.imglib2.converter.AbstractConvertedCursor
- jumpFwd(long) - Method in class net.imglib2.display.projector.sampler.IntervalSampler
- jumpFwd(long) - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
- jumpFwd(long) - Method in class net.imglib2.img.array.AbstractArrayCursor
- jumpFwd(long) - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Move steps × forward.
- jumpFwd(long) - Method in class net.imglib2.img.cell.CellCursor
- jumpFwd(long) - Method in class net.imglib2.img.cell.CellLocalizingCursor
- jumpFwd(long) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- jumpFwd(long) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- jumpFwd(long) - Method in class net.imglib2.img.list.ListCursor
- jumpFwd(long) - Method in class net.imglib2.img.list.ListLocalizingCursor
- jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarCursor
- jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
- jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Highly recommended to override this with a more efficient version.
- jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
-
Move steps × forward.
- jumpFwd(long) - Method in class net.imglib2.iterator.IntervalIterator
- jumpFwd(long) - Method in interface net.imglib2.Iterator
-
Move steps × forward.
- jumpFwd(long) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- jumpFwd(long) - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
- jumpFwd(long) - Method in class net.imglib2.KDTree.KDTreeCursor
- jumpFwd(long) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- jumpFwd(long) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- jumpFwd(long) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Move steps × forward.
- jumpFwd(long) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
K
- k - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- k - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- KDTree<T> - Class in net.imglib2
-
KDTree to access values at RealLocalizable positions.
- KDTree(List<T>, List<L>) - Constructor for class net.imglib2.KDTree
-
Construct a KDTree from the elements in the given list.
- KDTree(IterableRealInterval<T>) - Constructor for class net.imglib2.KDTree
-
Construct a KDTree from the elements of the given
IterableRealInterval
. - KDTree.DimComparator<L extends RealLocalizable> - Class in net.imglib2
-
Compare RealLocalizables by comparing their coordinates in dimension d.
- KDTree.KDTreeCursor - Class in net.imglib2
- KDTree.SamplerNode<T> - Class in net.imglib2
-
A KDTreeNode that stores it's value as a Sampler.
- KDTree.ValueNode<T> - Class in net.imglib2
-
A KDTreeNode that stores it's value as a reference.
- KDTreeCursor(KDTree<T>) - Constructor for class net.imglib2.KDTree.KDTreeCursor
- KDTreeCursor(KDTree.KDTreeCursor) - Constructor for class net.imglib2.KDTree.KDTreeCursor
- KDTreeNode<T> - Class in net.imglib2
-
Abstract base class for nodes in a KDTree.
- KDTreeNode(KDTreeNode<T>) - Constructor for class net.imglib2.KDTreeNode
- KDTreeNode(RealLocalizable, int, KDTreeNode<T>, KDTreeNode<T>) - Constructor for class net.imglib2.KDTreeNode
- KNearestNeighborSearch<T> - Interface in net.imglib2.neighborsearch
-
k-nearest-neighbor search in an Euclidean space.
- KNearestNeighborSearchOnIterableRealInterval<T> - Class in net.imglib2.neighborsearch
-
k-nearest-neighbor search on
IterableRealInterval
implemented as linear search. - KNearestNeighborSearchOnIterableRealInterval(IterableRealInterval<T>, int) - Constructor for class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- KNearestNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
-
Implementation of
KNearestNeighborSearch
search for kd-trees. - KNearestNeighborSearchOnKDTree(KDTree<T>, int) - Constructor for class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- kthElement(int, byte[]) - Static method in class net.imglib2.util.KthElement
-
Partition an array of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, char[]) - Static method in class net.imglib2.util.KthElement
-
Partition an array of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, double[]) - Static method in class net.imglib2.util.KthElement
-
Partition an array of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, float[]) - Static method in class net.imglib2.util.KthElement
-
Partition an array of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int[]) - Static method in class net.imglib2.util.KthElement
-
Partition an array of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, byte[]) - Static method in class net.imglib2.util.KthElement
-
Partition a subarray of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, char[]) - Static method in class net.imglib2.util.KthElement
-
Partition a subarray of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, double[]) - Static method in class net.imglib2.util.KthElement
-
Partition a subarray of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, float[]) - Static method in class net.imglib2.util.KthElement
-
Partition a subarray of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, int[]) - Static method in class net.imglib2.util.KthElement
-
Partition a subarray of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, long[]) - Static method in class net.imglib2.util.KthElement
-
Partition a subarray of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, short[]) - Static method in class net.imglib2.util.KthElement
-
Partition a subarray of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, List<T>) - Static method in class net.imglib2.util.KthElement
-
Partition a sublist of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, List<T>, int[]) - Static method in class net.imglib2.util.KthElement
-
Partition a sublist of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
-
Partition a sublist of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, int, int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
-
Partition a sublist of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, long[]) - Static method in class net.imglib2.util.KthElement
-
Partition an array of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, short[]) - Static method in class net.imglib2.util.KthElement
-
Partition an array of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, List<T>) - Static method in class net.imglib2.util.KthElement
-
Partition a list of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, List<T>, int[]) - Static method in class net.imglib2.util.KthElement
-
Partition a list of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
-
Partition a list of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
-
Partition a list of
values
such that the k-th smallest value is at positionk
, elements before the k-th are smaller or equal and elements after the k-th are larger or equal. - kthElement(ListIterator<T>, ListIterator<T>, int) - Static method in class net.imglib2.util.KthElement
-
Partition a sublist such that the k-th smallest value is at position
k
, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal. - kthElement(ListIterator<T>, ListIterator<T>, int, int[]) - Static method in class net.imglib2.util.KthElement
-
Partition a sublist such that the k-th smallest value is at position
k
, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal. - kthElement(ListIterator<T>, ListIterator<T>, int, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
-
Partition a sublist such that the k-th smallest value is at position
k
, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal. - kthElement(ListIterator<T>, ListIterator<T>, int, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
-
Partition a sublist such that the k-th smallest value is at position
k
, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal. - KthElement - Class in net.imglib2.util
-
TODO
- KthElement() - Constructor for class net.imglib2.util.KthElement
L
- LanczosInterpolator<T extends RealType<T>> - Class in net.imglib2.interpolation.randomaccess
-
n-dimensional double-based Lanczos Interpolation
- LanczosInterpolator(LanczosInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- LanczosInterpolator(RandomAccessible<T>, int, boolean, double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolator
-
Creates a new Lanczos-interpolation
- LanczosInterpolatorFactory<T extends RealType<T>> - Class in net.imglib2.interpolation.randomaccess
-
TODO
- LanczosInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
-
Creates a new
LanczosInterpolatorFactory
with standard parameters (do clipping, alpha=3) - LanczosInterpolatorFactory(double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
-
Creates a new
LanczosInterpolatorFactory
using the Lanczos (sinc) interpolation in a certain window - LanczosInterpolatorFactory(int, boolean) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
-
Creates a new
LanczosInterpolatorFactory
using the Lanczos (sinc) interpolation in a certain window - LanczosInterpolatorFactory(int, double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
-
Creates a new
LanczosInterpolatorFactory
using the Lanczos (sinc) interpolation in a certain window - largestContainedInterval(RealInterval) - Static method in class net.imglib2.util.Intervals
-
Compute the largest
Interval
that is contained in the specifiedRealInterval
. - lastIndex - Variable in class net.imglib2.img.array.AbstractArrayCursor
-
Last index
- lastIndex - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Last index.
- lastIndex - Variable in class net.imglib2.img.planar.PlanarCursor
- lastIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
- lastIndex - Variable in class net.imglib2.iterator.IntervalIterator
- lastIndex - Variable in class net.imglib2.PointSampleList
- lastIndex - Variable in class net.imglib2.RealPointSampleList
- lastIndexInCell - Variable in class net.imglib2.img.cell.CellCursor
- lastIndexInCell - Variable in class net.imglib2.img.cell.CellLocalizingCursor
- lastSliceIndex - Variable in class net.imglib2.img.planar.PlanarCursor
- lastSliceIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
- LazyCellImg<T extends NativeType<T>,A> - Class in net.imglib2.img.cell
-
A
AbstractCellImg
that obtains its Cells lazily when they are accessed. - LazyCellImg(CellGrid, Fraction, LazyCellImg.Get<Cell<A>>) - Constructor for class net.imglib2.img.cell.LazyCellImg
- LazyCellImg(CellGrid, T, LazyCellImg.Get<Cell<A>>) - Constructor for class net.imglib2.img.cell.LazyCellImg
- LazyCellImg.Get<T> - Interface in net.imglib2.img.cell
- LazyCellImg.LazyCells<T> - Class in net.imglib2.img.cell
- LazyCells(long[], LazyCellImg.Get<T>) - Constructor for class net.imglib2.img.cell.LazyCellImg.LazyCells
- ldu(int) - Static method in class net.imglib2.util.Util
-
(Hopefully) fast floor log2 of an unsigned(!) integer value.
- left - Variable in class net.imglib2.KDTreeNode
-
Left child of this node.
- length - Variable in class net.imglib2.view.composite.AbstractNumericComposite
- length(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
get the length of a.
- LinAlgHelpers - Class in net.imglib2.util
-
Basic vector and matrix operations implemented on double[] and double[][].
- LinAlgHelpers() - Constructor for class net.imglib2.util.LinAlgHelpers
- LinearRange - Interface in net.imglib2.display
- linkedType - Variable in class net.imglib2.img.AbstractNativeImg
- linkType(NativeType, NativeImg) - Static method in class net.imglib2.img.cell.LazyCellImg
-
Reflection hack because there is no
T NativeType <T>.create(NativeImg<?, A>)
method in ImgLib2 Note that for this method to be introduced, NativeType would need an additional generic parameter A that specifies the accepted family of access objects that can be used in the NativeImg... - ListCursor<T> - Class in net.imglib2.img.list
- ListCursor(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListCursor
- ListCursor(ListCursor<T>) - Constructor for class net.imglib2.img.list.ListCursor
- ListImg<T> - Class in net.imglib2.img.list
-
This
Img
stores an image in a single linearArrayList
. - ListImg(long[], T) - Constructor for class net.imglib2.img.list.ListImg
- ListImg(Collection<T>, long...) - Constructor for class net.imglib2.img.list.ListImg
- ListImgFactory<T> - Class in net.imglib2.img.list
-
ImgFactory
forListImg
of any type T. - ListImgFactory() - Constructor for class net.imglib2.img.list.ListImgFactory
- ListLocalizingCursor<T> - Class in net.imglib2.img.list
- ListLocalizingCursor(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListLocalizingCursor
- ListLocalizingCursor(ListLocalizingCursor<T>) - Constructor for class net.imglib2.img.list.ListLocalizingCursor
- ListRandomAccess<T> - Class in net.imglib2.img.list
-
RandomAccess
on aListImg
. - ListRandomAccess(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListRandomAccess
- ListRandomAccess(ListRandomAccess<T>) - Constructor for class net.imglib2.img.list.ListRandomAccess
- Localizable - Interface in net.imglib2
-
The
Localizable
interface can localize itself in an n-dimensional discrete space. - localize(double[]) - Method in class net.imglib2.AbstractCursor
- localize(double[]) - Method in class net.imglib2.AbstractCursorInt
- localize(double[]) - Method in class net.imglib2.AbstractLocalizable
- localize(double[]) - Method in class net.imglib2.AbstractLocalizableInt
- localize(double[]) - Method in class net.imglib2.AbstractRealLocalizable
- localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
- localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- localize(double[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- localize(double[]) - Method in class net.imglib2.iterator.IntervalIterator
- localize(double[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- localize(double[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
- localize(double[]) - Method in class net.imglib2.KDTree.KDTreeCursor
- localize(double[]) - Method in class net.imglib2.KDTreeNode
- localize(double[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- localize(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- localize(double[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- localize(double[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- localize(double[]) - Method in interface net.imglib2.RealLocalizable
-
Write the current position into the passed array.
- localize(double[]) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- localize(double[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- localize(double[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- localize(double[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- localize(double[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- localize(double[]) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Write the current position into the passed array.
- localize(double[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- localize(double[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- localize(double[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- localize(double[]) - Method in class net.imglib2.view.StackView.DefaultRA
- localize(double[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- localize(double[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- localize(double[]) - Method in class net.imglib2.view.TranslationRandomAccess
- localize(float[]) - Method in class net.imglib2.AbstractCursor
- localize(float[]) - Method in class net.imglib2.AbstractCursorInt
- localize(float[]) - Method in class net.imglib2.AbstractLocalizable
- localize(float[]) - Method in class net.imglib2.AbstractLocalizableInt
- localize(float[]) - Method in class net.imglib2.AbstractRealLocalizable
- localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
- localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- localize(float[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- localize(float[]) - Method in class net.imglib2.iterator.IntervalIterator
- localize(float[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- localize(float[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
- localize(float[]) - Method in class net.imglib2.KDTree.KDTreeCursor
- localize(float[]) - Method in class net.imglib2.KDTreeNode
- localize(float[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- localize(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- localize(float[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- localize(float[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- localize(float[]) - Method in interface net.imglib2.RealLocalizable
-
Write the current position into the passed array.
- localize(float[]) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- localize(float[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- localize(float[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- localize(float[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- localize(float[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- localize(float[]) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Write the current position into the passed array.
- localize(float[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- localize(float[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- localize(float[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- localize(float[]) - Method in class net.imglib2.view.StackView.DefaultRA
- localize(float[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- localize(float[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- localize(float[]) - Method in class net.imglib2.view.TranslationRandomAccess
- localize(int[]) - Method in class net.imglib2.AbstractCursor
- localize(int[]) - Method in class net.imglib2.AbstractLocalizable
- localize(int[]) - Method in class net.imglib2.AbstractLocalizableInt
- localize(int[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
- localize(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- localize(int[]) - Method in class net.imglib2.img.array.AbstractArrayCursor
- localize(int[]) - Method in class net.imglib2.img.list.ListCursor
- localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor
- localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor1D
- localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor2D
- localize(int[]) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Write the current position into the passed array.
- localize(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- localize(int[]) - Method in class net.imglib2.iterator.IntervalIterator
- localize(int[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- localize(int[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
- localize(int[]) - Method in interface net.imglib2.Localizable
-
Write the current position into the passed array.
- localize(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- localize(int[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- localize(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- localize(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- localize(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- localize(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- localize(int[]) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Write the current position into the passed array.
- localize(int[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- localize(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- localize(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- localize(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
- localize(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- localize(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- localize(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
- localize(long[]) - Method in class net.imglib2.AbstractCursorInt
- localize(long[]) - Method in class net.imglib2.AbstractLocalizable
- localize(long[]) - Method in class net.imglib2.AbstractLocalizableInt
- localize(long[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
- localize(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- localize(long[]) - Method in class net.imglib2.img.cell.CellCursor
- localize(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- localize(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- localize(long[]) - Method in class net.imglib2.iterator.IntervalIterator
- localize(long[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- localize(long[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
- localize(long[]) - Method in interface net.imglib2.Localizable
-
Write the current position into the passed array.
- localize(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- localize(long[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- localize(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- localize(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- localize(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- localize(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- localize(long[]) - Method in class net.imglib2.view.iteration.SlicingCursor
-
Write the current position into the passed array.
- localize(long[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- localize(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- localize(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- localize(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
- localize(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- localize(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- localize(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
- localizingCursor() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
- localizingCursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- localizingCursor() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
- localizingCursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
- localizingCursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
- localizingCursor() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- localizingCursor() - Method in class net.imglib2.histogram.Histogram1d
- localizingCursor() - Method in class net.imglib2.histogram.HistogramNd
- localizingCursor() - Method in class net.imglib2.img.array.ArrayImg
- localizingCursor() - Method in class net.imglib2.img.cell.AbstractCellImg
- localizingCursor() - Method in class net.imglib2.img.ImgView
- localizingCursor() - Method in class net.imglib2.img.list.AbstractListImg
- localizingCursor() - Method in class net.imglib2.img.list.AbstractLongListImg
- localizingCursor() - Method in class net.imglib2.img.planar.PlanarImg
- localizingCursor() - Method in class net.imglib2.img.sparse.NtreeImg
- localizingCursor() - Method in interface net.imglib2.IterableInterval
- localizingCursor() - Method in interface net.imglib2.IterableRealInterval
-
Returns a
RealLocalizable
Iterator
that calculates its location at each iteration step. - localizingCursor() - Method in class net.imglib2.KDTree
- localizingCursor() - Method in class net.imglib2.PointSampleList
- localizingCursor() - Method in class net.imglib2.RealPointSampleList
- localizingCursor() - Method in class net.imglib2.view.IntervalView
- localizingCursor() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
- localizingCursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
- localizingCursor(Interval) - Method in class net.imglib2.img.ImgView
- localizingCursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
- localizingCursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
- LocalizingIntervalIterator - Class in net.imglib2.iterator
-
Use this class to iterate a virtual
Interval
in flat order, that is: row by row, plane by plane, cube by cube, ... - LocalizingIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
- LocalizingIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
- LocalizingIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
- LocalizingIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
- LocalizingIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
- LocalizingZeroMinIntervalIterator - Class in net.imglib2.iterator
-
Use this class to iterate a virtual rectangular
Interval
whose min coordinates are at 0n in flat order, that is: row by row, plane by plane, cube by cube, ... - LocalizingZeroMinIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
- LocalizingZeroMinIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
- LocalizingZeroMinIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
- log2(double) - Static method in class net.imglib2.util.Util
- long2int(long[]) - Static method in class net.imglib2.util.Util
- LongAccess - Interface in net.imglib2.img.basictypeaccess
-
TODO
- LongArray - Class in net.imglib2.img.basictypeaccess.array
- LongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.LongArray
- LongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.LongArray
- LongListCursor() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- LongListCursor(AbstractLongListImg.LongListCursor) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- LongListLocalizingCursor() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- LongListLocalizingCursor(AbstractLongListImg.LongListLocalizingCursor) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- LongListRandomAccess() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- LongListRandomAccess(AbstractLongListImg.LongListRandomAccess) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- LongNtree - Class in net.imglib2.img.sparse
-
LongAccess based on a
Ntree
<Longeger>
. - LongNtree(long[], long[], long) - Constructor for class net.imglib2.img.sparse.LongNtree
-
Standard constructor called by factory
- LongNtree(Ntree<Long>, long[]) - Constructor for class net.imglib2.img.sparse.LongNtree
- longs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- longs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- longs(long[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- longs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- LongType - Class in net.imglib2.type.numeric.integer
-
TODO
- LongType() - Constructor for class net.imglib2.type.numeric.integer.LongType
- LongType(long) - Constructor for class net.imglib2.type.numeric.integer.LongType
- LongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.LongType
- LongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.LongType
- lookupARGB(double, double, double) - Method in class net.imglib2.display.AbstractArrayColorTable
- lookupARGB(double, double, double) - Method in interface net.imglib2.display.ColorTable
- lowerTailCount() - Method in class net.imglib2.histogram.Histogram1d
-
Returns the frequency count of values in the lower tail bin (if any).
- lowerTailCount() - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of values in all lower tail bins (if any).
- lowerTailCount(int) - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of values in the lower tail bin (if any) for the given dimension.
- lut - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- lut - Variable in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
- lutScale - Static variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
M
- makeNode(List<L>, int, int, int) - Method in class net.imglib2.KDTree
- makeNode(List<L>, int, int, int, List<T>, int[]) - Method in class net.imglib2.KDTree
-
Construct the tree by recursively adding nodes.
- makeNode(ListIterator<L>, ListIterator<L>, int) - Method in class net.imglib2.KDTree
- makeNode(ListIterator<L>, ListIterator<L>, int, List<T>, int[]) - Method in class net.imglib2.KDTree
-
Construct the tree by recursively adding nodes.
- makeSamplerNode(List<RealCursor<T>>, int, int, int) - Method in class net.imglib2.KDTree
-
Construct the tree by recursively adding nodes.
- map() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
- map() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
- map() - Method in class net.imglib2.display.projector.IterableIntervalProjector2D
-
projects data from the source to the target and applies the former specified
Converter
e.g. - map() - Method in interface net.imglib2.display.projector.Projector
- map() - Method in class net.imglib2.display.projector.RandomAccessibleProjector2D
-
projects data from the source to the target and applies the former specified
Converter
e.g. - map() - Method in class net.imglib2.display.projector.sampler.SamplingProjector2D
- map() - Method in class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector
- map() - Method in class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector
- map() - Method in class net.imglib2.display.projector.specialized.PlanarImgXYByteProjector
- map() - Method in class net.imglib2.display.projector.specialized.PlanarImgXYShortProjector
- map() - Method in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
-
projects data from the source to the target and applies the former specified
Converter
e.g. - map(List<T>, long[]) - Method in class net.imglib2.histogram.HistogramNd
-
Fills a bin position by mapping from a set of representative values.
- map(T) - Method in interface net.imglib2.histogram.BinMapper1d
-
Converts a data value to a long index within the bin distribution.
- map(T) - Method in class net.imglib2.histogram.Histogram1d
-
Returns a bin position by mapping from a representative value.
- map(T) - Method in class net.imglib2.histogram.Integer1dBinMapper
- map(T) - Method in class net.imglib2.histogram.Real1dBinMapper
- mapSingle(RandomAccess<A>, Converter<A, ARGBType>) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
- mapSingle(RandomAccess<A>, Converter<A, ARGBType>) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
- max - Variable in class net.imglib2.AbstractInterval
- max - Variable in class net.imglib2.AbstractRealInterval
- max - Variable in class net.imglib2.display.AbstractLinearRange
- max - Variable in class net.imglib2.display.projector.AbstractProjector2D
- max - Variable in class net.imglib2.img.AbstractImg
- max - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Maximum of the
ArrayImg
in every dimension. - max - Variable in class net.imglib2.img.cell.Cell
- max - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
-
Maximum of the
PlanarImg
in every dimension. - max - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- max - Variable in class net.imglib2.KDTree
-
maximum of each dimension.
- max - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- max - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
-
Maximum of the wrapped
RandomAccessible
. - max - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
- max - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
-
Maximum of the wrapped
RandomAccessible
. - max - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
- max - Variable in class net.imglib2.RealPointSampleList
- max - Variable in class net.imglib2.view.SubsampleIntervalView
- max() - Method in class net.imglib2.histogram.Histogram1d
- max(double[]) - Static method in class net.imglib2.util.Util
- max(double[], double[]) - Static method in class net.imglib2.util.Util
-
Writes max(a,b) into a
- max(int) - Method in class net.imglib2.AbstractInterval
- max(int) - Method in class net.imglib2.AbstractWrappedInterval
- max(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- max(int) - Method in class net.imglib2.histogram.Histogram1d
- max(int) - Method in class net.imglib2.histogram.HistogramNd
- max(int) - Method in class net.imglib2.img.AbstractImg
- max(int) - Method in interface net.imglib2.Interval
-
Get the maximum in dimension d.
- max(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
- max(int) - Method in class net.imglib2.view.SubsampleIntervalView
- max(long[]) - Method in class net.imglib2.AbstractInterval
- max(long[]) - Method in class net.imglib2.AbstractWrappedInterval
- max(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- max(long[]) - Method in class net.imglib2.histogram.Histogram1d
- max(long[]) - Method in class net.imglib2.histogram.HistogramNd
- max(long[]) - Method in class net.imglib2.img.AbstractImg
- max(long[]) - Method in interface net.imglib2.Interval
-
Write the maximum of each dimension into long[].
- max(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
- max(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
- max(List<Float>) - Static method in class net.imglib2.util.Util
- max(Positionable) - Method in class net.imglib2.AbstractInterval
- max(Positionable) - Method in class net.imglib2.AbstractWrappedInterval
- max(Positionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- max(Positionable) - Method in class net.imglib2.histogram.Histogram1d
- max(Positionable) - Method in class net.imglib2.histogram.HistogramNd
- max(Positionable) - Method in class net.imglib2.img.AbstractImg
- max(Positionable) - Method in interface net.imglib2.Interval
-
Sets a
Positionable
to the maximum of thisInterval
- max(Positionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
- max(Positionable) - Method in class net.imglib2.view.SubsampleIntervalView
- max(T, T) - Static method in class net.imglib2.util.Util
- maxAsDoubleArray(RealInterval) - Static method in class net.imglib2.util.Intervals
-
Create a
double[]
with the maximum of aRealInterval
. - maxAsIntArray(Interval) - Static method in class net.imglib2.util.Intervals
-
Create a
int[]
with the maximum of anInterval
. - maxAsLongArray(Interval) - Static method in class net.imglib2.util.Intervals
-
Create a
long[]
with the maximum of anInterval
. - maxSourceDimension - Variable in class net.imglib2.transform.integer.SequentializeTransform
- maxTargetDimension - Variable in class net.imglib2.transform.integer.SequentializeTransform
- maxValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- maxValue - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
- median(double[]) - Static method in class net.imglib2.util.Util
- median(float[]) - Static method in class net.imglib2.util.Util
- median(long[]) - Static method in class net.imglib2.util.Util
- min - Variable in class net.imglib2.AbstractInterval
- min - Variable in class net.imglib2.AbstractRealInterval
- min - Variable in class net.imglib2.display.AbstractLinearRange
- min - Variable in class net.imglib2.display.projector.AbstractProjector2D
- min - Variable in class net.imglib2.img.cell.Cell
- min - Variable in class net.imglib2.KDTree
-
minimum of each dimension.
- min - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
-
Minimum of the wrapped
RandomAccessible
. - min - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- min - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
-
Minimum of the wrapped
RandomAccessible
. - min - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
-
Minimum of the wrapped
RandomAccessible
. - min - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
- min - Variable in class net.imglib2.RealPointSampleList
- min() - Method in class net.imglib2.histogram.Histogram1d
- min(double[]) - Static method in class net.imglib2.util.Util
- min(double[], double[]) - Static method in class net.imglib2.util.Util
-
Writes min(a,b) into a
- min(int) - Method in class net.imglib2.AbstractInterval
- min(int) - Method in class net.imglib2.AbstractWrappedInterval
- min(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- min(int) - Method in class net.imglib2.histogram.Histogram1d
- min(int) - Method in class net.imglib2.histogram.HistogramNd
- min(int) - Method in class net.imglib2.img.AbstractImg
- min(int) - Method in class net.imglib2.img.cell.Cell
- min(int) - Method in interface net.imglib2.Interval
-
Get the minimum in dimension d.
- min(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
- min(int) - Method in class net.imglib2.view.SubsampleIntervalView
- min(long[]) - Method in class net.imglib2.AbstractInterval
- min(long[]) - Method in class net.imglib2.AbstractWrappedInterval
- min(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- min(long[]) - Method in class net.imglib2.histogram.Histogram1d
- min(long[]) - Method in class net.imglib2.histogram.HistogramNd
- min(long[]) - Method in class net.imglib2.img.AbstractImg
- min(long[]) - Method in class net.imglib2.img.cell.Cell
-
Write the minimum of each dimension into long[].
- min(long[]) - Method in interface net.imglib2.Interval
-
Write the minimum of each dimension into long[].
- min(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
- min(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
- min(List<Float>) - Static method in class net.imglib2.util.Util
- min(Positionable) - Method in class net.imglib2.AbstractInterval
- min(Positionable) - Method in class net.imglib2.AbstractWrappedInterval
- min(Positionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- min(Positionable) - Method in class net.imglib2.histogram.Histogram1d
- min(Positionable) - Method in class net.imglib2.histogram.HistogramNd
- min(Positionable) - Method in class net.imglib2.img.AbstractImg
- min(Positionable) - Method in interface net.imglib2.Interval
-
Sets a
Positionable
to the minimum of thisInterval
- min(Positionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
- min(Positionable) - Method in class net.imglib2.view.SubsampleIntervalView
- min(T, T) - Static method in class net.imglib2.util.Util
- minAsDoubleArray(RealInterval) - Static method in class net.imglib2.util.Intervals
-
Create a
double[]
with the minimum of aRealInterval
. - minAsIntArray(Interval) - Static method in class net.imglib2.util.Intervals
-
Create a
int[]
with the minimum of anInterval
. - minAsLongArray(Interval) - Static method in class net.imglib2.util.Intervals
-
Create a
long[]
with the minimum of anInterval
. - minThreshold - Static variable in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
- minValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- minValue - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
- mirror - Variable in class net.imglib2.img.planar.PlanarImg
- Mixed - Interface in net.imglib2.transform.integer
-
Mixed transform allows to express common integer view transformations such as translation, rotation, rotoinversion, and projection.
- MixedRandomAccess<T> - Class in net.imglib2.view
- MixedRandomAccess(MixedRandomAccess<T>) - Constructor for class net.imglib2.view.MixedRandomAccess
- MixedTransform - Class in net.imglib2.transform.integer
-
Mixed transform allows to express common integer view transformations such as translation, rotation, rotoinversion, and projection.
- MixedTransform(int, int) - Constructor for class net.imglib2.transform.integer.MixedTransform
- MixedTransformView<T> - Class in net.imglib2.view
-
TODO
- MixedTransformView(RandomAccessible<T>, Mixed) - Constructor for class net.imglib2.view.MixedTransformView
- modeCount() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Returns the highest frequency count found within the bins.
- modePositions() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Returns a list of bin positions of the highest frequency bins.
- move(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(double[]) - Method in class net.imglib2.position.transform.Floor
- move(double[]) - Method in class net.imglib2.position.transform.FloorOffset
- move(double[]) - Method in class net.imglib2.position.transform.Round
- move(double[]) - Method in class net.imglib2.RealPoint
- move(double[]) - Method in interface net.imglib2.RealPositionable
-
Move the element relative to its current location using a float[] as distance vector.
- move(double, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(double, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(double, int) - Method in class net.imglib2.position.transform.Floor
- move(double, int) - Method in class net.imglib2.position.transform.FloorOffset
- move(double, int) - Method in class net.imglib2.position.transform.Round
- move(double, int) - Method in class net.imglib2.RealPoint
- move(double, int) - Method in interface net.imglib2.RealPositionable
-
Move the element in one dimension for some distance.
- move(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(float[]) - Method in class net.imglib2.position.transform.Floor
- move(float[]) - Method in class net.imglib2.position.transform.FloorOffset
- move(float[]) - Method in class net.imglib2.position.transform.Round
- move(float[]) - Method in class net.imglib2.RealPoint
- move(float[]) - Method in interface net.imglib2.RealPositionable
-
Move the element relative to its current location using a float[] as distance vector.
- move(float, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(float, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(float, int) - Method in class net.imglib2.position.transform.Floor
- move(float, int) - Method in class net.imglib2.position.transform.FloorOffset
- move(float, int) - Method in class net.imglib2.position.transform.Round
- move(float, int) - Method in class net.imglib2.RealPoint
- move(float, int) - Method in interface net.imglib2.RealPositionable
-
Move the element in one dimension for some distance.
- move(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- move(int[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(int[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
- move(int[]) - Method in class net.imglib2.img.cell.CellRandomAccess
- move(int[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- move(int[]) - Method in class net.imglib2.img.list.ListRandomAccess
- move(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- move(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- move(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- move(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- move(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- move(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- move(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- move(int[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(int[]) - Method in class net.imglib2.Point
- move(int[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- move(int[]) - Method in interface net.imglib2.Positionable
-
Move the element relative to its current location using an int[] as distance vector.
- move(int[]) - Method in class net.imglib2.RealPoint
- move(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- move(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- move(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- move(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- move(int[]) - Method in class net.imglib2.view.MixedRandomAccess
- move(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- move(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- move(int[]) - Method in class net.imglib2.view.SlicingRandomAccess
- move(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
- move(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- move(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- move(int[]) - Method in class net.imglib2.view.TransformRandomAccess
- move(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
- move(int, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- move(int, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(int, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
- move(int, int) - Method in class net.imglib2.img.cell.CellRandomAccess
- move(int, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- move(int, int) - Method in class net.imglib2.img.list.ListRandomAccess
- move(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- move(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- move(int, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- move(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- move(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- move(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- move(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- move(int, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(int, int) - Method in class net.imglib2.Point
- move(int, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- move(int, int) - Method in interface net.imglib2.Positionable
-
Move the element in one dimension for some distance.
- move(int, int) - Method in class net.imglib2.RealPoint
- move(int, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- move(int, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- move(int, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- move(int, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- move(int, int) - Method in class net.imglib2.view.MixedRandomAccess
- move(int, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- move(int, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- move(int, int) - Method in class net.imglib2.view.SlicingRandomAccess
- move(int, int) - Method in class net.imglib2.view.StackView.DefaultRA
- move(int, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- move(int, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- move(int, int) - Method in class net.imglib2.view.TransformRandomAccess
- move(int, int) - Method in class net.imglib2.view.TranslationRandomAccess
- move(long) - Method in class net.imglib2.img.array.ArrayRandomAccess
-
Moves n steps in dimension 0
- move(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- move(long[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(long[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
- move(long[]) - Method in class net.imglib2.img.cell.CellRandomAccess
- move(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- move(long[]) - Method in class net.imglib2.img.list.ListRandomAccess
- move(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- move(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- move(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- move(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- move(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- move(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- move(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- move(long[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(long[]) - Method in class net.imglib2.Point
- move(long[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- move(long[]) - Method in interface net.imglib2.Positionable
-
Move the element relative to its current location using a long[] as distance vector.
- move(long[]) - Method in class net.imglib2.RealPoint
- move(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- move(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- move(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- move(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- move(long[]) - Method in class net.imglib2.view.MixedRandomAccess
- move(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- move(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- move(long[]) - Method in class net.imglib2.view.SlicingRandomAccess
- move(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
- move(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- move(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- move(long[]) - Method in class net.imglib2.view.TransformRandomAccess
- move(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
- move(long, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- move(long, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(long, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
- move(long, int) - Method in class net.imglib2.img.cell.CellRandomAccess
- move(long, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- move(long, int) - Method in class net.imglib2.img.list.ListRandomAccess
- move(long, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- move(long, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- move(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
-
Override with a more efficient version.
- move(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- move(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- move(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- move(long, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(long, int) - Method in class net.imglib2.Point
- move(long, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- move(long, int) - Method in interface net.imglib2.Positionable
-
Move the element in one dimension for some distance.
- move(long, int) - Method in class net.imglib2.RealPoint
- move(long, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- move(long, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- move(long, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- move(long, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- move(long, int) - Method in class net.imglib2.view.MixedRandomAccess
- move(long, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- move(long, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- move(long, int) - Method in class net.imglib2.view.SlicingRandomAccess
- move(long, int) - Method in class net.imglib2.view.StackView.DefaultRA
- move(long, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- move(long, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- move(long, int) - Method in class net.imglib2.view.TransformRandomAccess
- move(long, int) - Method in class net.imglib2.view.TranslationRandomAccess
- move(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- move(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(Localizable) - Method in class net.imglib2.img.array.ArrayRandomAccess
- move(Localizable) - Method in class net.imglib2.img.cell.CellRandomAccess
- move(Localizable) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- move(Localizable) - Method in class net.imglib2.img.list.ListRandomAccess
- move(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- move(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- move(Localizable) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- move(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- move(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- move(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- move(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- move(Localizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(Localizable) - Method in class net.imglib2.Point
- move(Localizable) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- move(Localizable) - Method in interface net.imglib2.Positionable
-
Move the element relative to its current location using an
Localizable
as distance vector. - move(Localizable) - Method in class net.imglib2.RealPoint
- move(Localizable) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- move(Localizable) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- move(Localizable) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- move(Localizable) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- move(Localizable) - Method in class net.imglib2.view.MixedRandomAccess
- move(Localizable) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- move(Localizable) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- move(Localizable) - Method in class net.imglib2.view.SlicingRandomAccess
- move(Localizable) - Method in class net.imglib2.view.StackView.DefaultRA
- move(Localizable) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- move(Localizable) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- move(Localizable) - Method in class net.imglib2.view.TransformRandomAccess
- move(Localizable) - Method in class net.imglib2.view.TranslationRandomAccess
- move(RealLocalizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- move(RealLocalizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- move(RealLocalizable) - Method in class net.imglib2.position.transform.Floor
- move(RealLocalizable) - Method in class net.imglib2.position.transform.FloorOffset
- move(RealLocalizable) - Method in class net.imglib2.position.transform.Round
- move(RealLocalizable) - Method in class net.imglib2.RealPoint
- move(RealLocalizable) - Method in interface net.imglib2.RealPositionable
-
Move the element relative to its current location using a
RealLocalizable
as distance vector. - MOVE_ALL_SLICE_ACCESSES - net.imglib2.view.StackView.StackAccessMode
-
Alternative behavior for some special cases; this is faster assuming that we access in a loop over dimensions with the last dimension (the hyper-slice dimension) in the inner loop.
- MoveAllSlicesRA(RandomAccessibleInterval<T>[]) - Constructor for class net.imglib2.view.StackView.MoveAllSlicesRA
- MoveAllSlicesRA(RandomAccessibleInterval<T>[], Interval) - Constructor for class net.imglib2.view.StackView.MoveAllSlicesRA
- moveDim0(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
-
Moves n steps in dimension 0
- mul(double) - Method in class net.imglib2.type.logic.BitType
- mul(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- mul(double) - Method in class net.imglib2.type.numeric.ARGBType
- mul(double) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- mul(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- mul(double) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- mul(double) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- mul(double) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- mul(double) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- mul(double) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
Implemented using
BigDecimal.multiply(BigDecimal)
andBigDecimal.toBigInteger()
. - mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- mul(double) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- mul(double) - Method in class net.imglib2.type.numeric.real.FloatType
- mul(double) - Method in interface net.imglib2.type.operators.MulFloatingPoint
- mul(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- mul(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- mul(double) - Method in class net.imglib2.view.composite.AbstractNumericComposite
- mul(float) - Method in class net.imglib2.type.logic.BitType
- mul(float) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- mul(float) - Method in class net.imglib2.type.numeric.ARGBType
- mul(float) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- mul(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- mul(float) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- mul(float) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- mul(float) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- mul(float) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- mul(float) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- mul(float) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- mul(float) - Method in class net.imglib2.type.numeric.real.FloatType
- mul(float) - Method in interface net.imglib2.type.operators.MulFloatingPoint
- mul(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- mul(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- mul(float) - Method in class net.imglib2.view.composite.AbstractNumericComposite
- mul(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
- mul(BitType) - Method in class net.imglib2.type.logic.BitType
- mul(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
- mul(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- mul(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
Relies on
BigInteger.multiply(BigInteger)
. - mul(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- mul(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- mul(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- mul(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- mul(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- mul(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
- mul(Fraction) - Method in class net.imglib2.util.Fraction
- mul(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- mul(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- mul(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- mul(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- mul(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- mul(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- mul(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- mul(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- mul(T) - Method in interface net.imglib2.type.operators.Mul
- mul(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- mul(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- Mul<T> - Interface in net.imglib2.type.operators
- mulCeil(long) - Method in class net.imglib2.util.Fraction
-
Multiply the value with this fraction.
- MulFloatingPoint - Interface in net.imglib2.type.operators
- mult(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set C = A * B.
- mult(double[][], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set c = A * b.
- multABT(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set C = A * B^T.
- multATB(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set C = A^T * B.
- multT(double[][], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set c = A^T * b.
N
- n - Variable in class net.imglib2.AbstractEuclideanSpace
-
the number of dimensions.
- n - Variable in class net.imglib2.img.AbstractImg
- n - Variable in class net.imglib2.img.cell.Cell
- n - Variable in class net.imglib2.KDTree
-
the number of dimensions.
- n - Variable in class net.imglib2.KDTreeNode
-
number of dimensions of the space (that is, k).
- n - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- n - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- n - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- n - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- n - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- n - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- n - Variable in class net.imglib2.RealPointSampleList
- n - Variable in class net.imglib2.transform.integer.BoundingBox
- n - Variable in class net.imglib2.view.composite.CompositeView
- n - Variable in class net.imglib2.view.MixedTransformView
- n - Variable in class net.imglib2.view.TransformView
- N - net.imglib2.type.label.BasePairBitType.Base
- NativeARGBDoubleType - Class in net.imglib2.type.numeric
- NativeARGBDoubleType() - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
- NativeARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
- NativeARGBDoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
- NativeARGBDoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
- NativeImg<T extends Type<T>,A> - Interface in net.imglib2.img
-
TODO
- NativeImgFactory<T extends NativeType<T>> - Class in net.imglib2.img
-
TODO
- NativeImgFactory() - Constructor for class net.imglib2.img.NativeImgFactory
- NativeType<T extends NativeType<T>> - Interface in net.imglib2.type
-
A
NativeType
is aType
that that provides access to data stored in Java primitive arrays. - nBits - Variable in class net.imglib2.type.AbstractBitType
- nDim - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
- NearestNeighborInterpolator<T> - Class in net.imglib2.interpolation.randomaccess
-
RealRandomAccess
to aRandomAccess
by nearest neighbor interpolation. - NearestNeighborInterpolator(NearestNeighborInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
- NearestNeighborInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
- NearestNeighborInterpolatorFactory<T> - Class in net.imglib2.interpolation.randomaccess
- NearestNeighborInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
- NearestNeighborSearch<T> - Interface in net.imglib2.neighborsearch
-
Nearest-neighbor search in an Euclidean space.
- NearestNeighborSearchInterpolator<T> - Class in net.imglib2.interpolation.neighborsearch
-
Nearest-neighbor interpolation implemented by
NearestNeighborSearch
. - NearestNeighborSearchInterpolator(NearestNeighborSearch<T>) - Constructor for class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
- NearestNeighborSearchInterpolatorFactory<T> - Class in net.imglib2.interpolation.neighborsearch
-
Factory for
NearestNeighborSearchInterpolator
instances that work on aNearestNeighborSearch
. - NearestNeighborSearchInterpolatorFactory() - Constructor for class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
- NearestNeighborSearchOnIterableRealInterval<T> - Class in net.imglib2.neighborsearch
-
k-nearest-neighbor search on
IterableRealInterval
implemented as linear search. - NearestNeighborSearchOnIterableRealInterval(IterableRealInterval<T>) - Constructor for class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- NearestNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
-
Implementation of
NearestNeighborSearch
search for kd-trees. - NearestNeighborSearchOnKDTree(KDTree<T>) - Constructor for class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- net.imglib2 - package net.imglib2
- net.imglib2.concatenate - package net.imglib2.concatenate
- net.imglib2.converter - package net.imglib2.converter
- net.imglib2.converter.read - package net.imglib2.converter.read
- net.imglib2.converter.readwrite - package net.imglib2.converter.readwrite
- net.imglib2.display - package net.imglib2.display
- net.imglib2.display.awt - package net.imglib2.display.awt
- net.imglib2.display.projector - package net.imglib2.display.projector
- net.imglib2.display.projector.composite - package net.imglib2.display.projector.composite
- net.imglib2.display.projector.sampler - package net.imglib2.display.projector.sampler
- net.imglib2.display.projector.specialized - package net.imglib2.display.projector.specialized
- net.imglib2.display.projector.volatiles - package net.imglib2.display.projector.volatiles
- net.imglib2.display.screenimage - package net.imglib2.display.screenimage
- net.imglib2.display.screenimage.awt - package net.imglib2.display.screenimage.awt
- net.imglib2.exception - package net.imglib2.exception
- net.imglib2.histogram - package net.imglib2.histogram
- net.imglib2.img - package net.imglib2.img
- net.imglib2.img.array - package net.imglib2.img.array
- net.imglib2.img.basictypeaccess - package net.imglib2.img.basictypeaccess
- net.imglib2.img.basictypeaccess.array - package net.imglib2.img.basictypeaccess.array
- net.imglib2.img.basictypeaccess.volatiles - package net.imglib2.img.basictypeaccess.volatiles
- net.imglib2.img.basictypeaccess.volatiles.array - package net.imglib2.img.basictypeaccess.volatiles.array
- net.imglib2.img.cell - package net.imglib2.img.cell
- net.imglib2.img.list - package net.imglib2.img.list
- net.imglib2.img.planar - package net.imglib2.img.planar
- net.imglib2.img.sparse - package net.imglib2.img.sparse
- net.imglib2.interpolation - package net.imglib2.interpolation
- net.imglib2.interpolation.neighborsearch - package net.imglib2.interpolation.neighborsearch
- net.imglib2.interpolation.randomaccess - package net.imglib2.interpolation.randomaccess
- net.imglib2.iterator - package net.imglib2.iterator
- net.imglib2.neighborsearch - package net.imglib2.neighborsearch
- net.imglib2.outofbounds - package net.imglib2.outofbounds
- net.imglib2.position.transform - package net.imglib2.position.transform
- net.imglib2.transform - package net.imglib2.transform
- net.imglib2.transform.integer - package net.imglib2.transform.integer
- net.imglib2.transform.integer.permutation - package net.imglib2.transform.integer.permutation
- net.imglib2.transform.integer.shear - package net.imglib2.transform.integer.shear
- net.imglib2.type - package net.imglib2.type
- net.imglib2.type.label - package net.imglib2.type.label
- net.imglib2.type.logic - package net.imglib2.type.logic
- net.imglib2.type.numeric - package net.imglib2.type.numeric
- net.imglib2.type.numeric.complex - package net.imglib2.type.numeric.complex
- net.imglib2.type.numeric.integer - package net.imglib2.type.numeric.integer
- net.imglib2.type.numeric.real - package net.imglib2.type.numeric.real
- net.imglib2.type.operators - package net.imglib2.type.operators
- net.imglib2.type.volatiles - package net.imglib2.type.volatiles
- net.imglib2.util - package net.imglib2.util
- net.imglib2.view - package net.imglib2.view
- net.imglib2.view.composite - package net.imglib2.view.composite
- net.imglib2.view.iteration - package net.imglib2.view.iteration
- next() - Method in class net.imglib2.AbstractCursor
- next() - Method in class net.imglib2.AbstractCursorInt
- next() - Method in class net.imglib2.AbstractLocalizingCursor
- next() - Method in class net.imglib2.AbstractLocalizingCursorInt
- next() - Method in class net.imglib2.converter.AbstractConvertedCursor
- next() - Method in class net.imglib2.img.sparse.NtreeCursor
- next() - Method in class net.imglib2.KDTree.KDTreeCursor
- next() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- next() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- next() - Method in class net.imglib2.view.iteration.SlicingCursor
- next() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- NLinearInterpolator<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
-
Performs multi-linear interpolation.
- NLinearInterpolator(NLinearInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
- NLinearInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
- NLinearInterpolator(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
- NLinearInterpolator1D<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
- NLinearInterpolator1D(NLinearInterpolator1D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
- NLinearInterpolator1D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
- NLinearInterpolator1D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
- NLinearInterpolator2D<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
- NLinearInterpolator2D(NLinearInterpolator2D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
- NLinearInterpolator2D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
- NLinearInterpolator2D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
- NLinearInterpolator3D<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
- NLinearInterpolator3D(NLinearInterpolator3D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
- NLinearInterpolator3D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
- NLinearInterpolator3D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
- NLinearInterpolatorARGB - Class in net.imglib2.interpolation.randomaccess
-
N-linear interpolator for ARGB values with overflow check.
- NLinearInterpolatorARGB(NLinearInterpolatorARGB) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- NLinearInterpolatorARGB(RandomAccessible<ARGBType>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- NLinearInterpolatorARGB(RandomAccessible<ARGBType>, ARGBType) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
- NLinearInterpolatorARGBFactory - Class in net.imglib2.interpolation.randomaccess
- NLinearInterpolatorARGBFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
- NLinearInterpolatorFactory<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
- NLinearInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
- normalize(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
normalize a, i.e., scale to unit length.
- not() - Method in interface net.imglib2.type.BooleanType
- not() - Method in class net.imglib2.type.logic.BitType
- not() - Method in class net.imglib2.type.logic.BoolType
- Ntree<T extends java.lang.Comparable<T>> - Class in net.imglib2.img.sparse
-
N-dimensional equivalent of a quad/oct-tree.
- Ntree(long[], T) - Constructor for class net.imglib2.img.sparse.Ntree
-
Create a ntree structure capable of representing an array of the given dimensions.
- Ntree.NtreeNode<T> - Class in net.imglib2.img.sparse
- NtreeAccess<L extends java.lang.Comparable<L>,A extends NtreeAccess<L,A>> - Interface in net.imglib2.img.sparse
- NtreeCursor<T extends NativeType<T>> - Class in net.imglib2.img.sparse
- NtreeCursor(NtreeImg<T, ?>) - Constructor for class net.imglib2.img.sparse.NtreeCursor
- NtreeImg<T extends NativeType<T>,A extends NtreeAccess<?,A>> - Class in net.imglib2.img.sparse
- NtreeImg(A, long[], Fraction) - Constructor for class net.imglib2.img.sparse.NtreeImg
- NtreeImg.PositionProvider - Interface in net.imglib2.img.sparse
- NtreeImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.sparse
- NtreeImgFactory() - Constructor for class net.imglib2.img.sparse.NtreeImgFactory
- NtreeIntAccess - Class in net.imglib2.img.sparse
-
IntAccess based on a
Ntree
<Integer>
. - NtreeIntAccess(Ntree<Integer>, long[]) - Constructor for class net.imglib2.img.sparse.NtreeIntAccess
- NtreeNode(Ntree.NtreeNode<T>, T) - Constructor for class net.imglib2.img.sparse.Ntree.NtreeNode
- NtreeRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.sparse
- NtreeRandomAccess(NtreeImg<T, ?>) - Constructor for class net.imglib2.img.sparse.NtreeRandomAccess
- numChannels - Variable in class net.imglib2.view.composite.NumericComposite.Factory
- numChannels - Variable in class net.imglib2.view.composite.RealComposite.Factory
- numDimensions - Variable in class net.imglib2.view.HyperSlice
- numDimensions - Variable in class net.imglib2.view.HyperSlicesView
- numDimensions() - Method in class net.imglib2.AbstractEuclideanSpace
- numDimensions() - Method in class net.imglib2.AbstractWrappedRealInterval
- numDimensions() - Method in class net.imglib2.converter.AbstractConvertedCursor
- numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
- numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
- numDimensions() - Method in interface net.imglib2.EuclideanSpace
-
Gets the space's number of dimensions.
- numDimensions() - Method in class net.imglib2.FinalDimensions
- numDimensions() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- numDimensions() - Method in class net.imglib2.histogram.Histogram1d
-
Return the number of dimensions of the frequency distribution of this histogram.
- numDimensions() - Method in class net.imglib2.histogram.HistogramNd
-
Return the number of dimensions of the frequency distribution of this histogram.
- numDimensions() - Method in class net.imglib2.img.AbstractImg
- numDimensions() - Method in class net.imglib2.img.cell.CellGrid
- numDimensions() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- numDimensions() - Method in class net.imglib2.interpolation.Interpolant
- numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
- numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
- numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
- numDimensions() - Method in class net.imglib2.KDTree.KDTreeCursor
- numDimensions() - Method in class net.imglib2.KDTree
- numDimensions() - Method in class net.imglib2.KDTreeNode
- numDimensions() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- numDimensions() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- numDimensions() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- numDimensions() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- numDimensions() - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- numDimensions() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- numDimensions() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- numDimensions() - Method in class net.imglib2.RealPointSampleList
- numDimensions() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- numDimensions() - Method in class net.imglib2.transform.integer.BoundingBox
- numDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- numDimensions() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- numDimensions() - Method in class net.imglib2.view.composite.CompositeView
- numDimensions() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
- numDimensions() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
- numDimensions() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- numDimensions() - Method in class net.imglib2.view.HyperSlice
- numDimensions() - Method in class net.imglib2.view.HyperSlicesView
- numDimensions() - Method in class net.imglib2.view.MixedTransformView
- numDimensions() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- numDimensions() - Method in class net.imglib2.view.RandomAccessiblePair
- numDimensions() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- numDimensions() - Method in class net.imglib2.view.StackView.DefaultRA
- numDimensions() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- numDimensions() - Method in class net.imglib2.view.SubsampleView
- numDimensions() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- numDimensions() - Method in class net.imglib2.view.TransformView
- numElements(int...) - Static method in class net.imglib2.util.Intervals
-
Compute the number of elements contained in an (integer) interval.
- numElements(long[]) - Static method in class net.imglib2.img.AbstractImg
- numElements(long...) - Static method in class net.imglib2.util.Intervals
-
Compute the number of elements contained in an (integer) interval.
- numElements(Dimensions) - Static method in class net.imglib2.util.Intervals
-
Compute the number of elements contained in an (integer)
Interval
. - numEntities - Variable in class net.imglib2.img.AbstractNativeImg
- numEntitiesRangeCheck(long[], Fraction) - Static method in class net.imglib2.img.array.ArrayImgFactory
- NumericComposite<T extends NumericType<T>> - Class in net.imglib2.view.composite
-
A vector of
NumericType
scalars. - NumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.NumericComposite
- NumericComposite.Factory<T extends NumericType<T>> - Class in net.imglib2.view.composite
- NumericType<T extends NumericType<T>> - Interface in net.imglib2.type.numeric
-
TODO
- numNeighbors() - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
-
Get the number of points found within radius after a
RadiusNeighborSearch.search(RealLocalizable, double, boolean)
. - numNeighbors() - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- numPixels - Variable in class net.imglib2.img.AbstractImg
- numSlices - Variable in class net.imglib2.img.planar.PlanarImg
- numSlices() - Method in class net.imglib2.img.planar.PlanarImg
- numSourceDimensions - Variable in class net.imglib2.transform.integer.MixedTransform
-
dimension of source vector.
- numSourceDimensions - Variable in class net.imglib2.transform.integer.permutation.PermutationTransform
- numSourceDimensions - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- numSourceDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
-
dimension of source vector.
- numSourceDimensions - Variable in class net.imglib2.transform.integer.SlicingTransform
-
dimension of source vector.
- numSourceDimensions() - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- numSourceDimensions() - Method in class net.imglib2.transform.integer.MixedTransform
- numSourceDimensions() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- numSourceDimensions() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- numSourceDimensions() - Method in class net.imglib2.transform.integer.SequentializeTransform
- numSourceDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- numSourceDimensions() - Method in class net.imglib2.transform.integer.SlicingTransform
- numSourceDimensions() - Method in class net.imglib2.transform.InverseTransform
- numSourceDimensions() - Method in interface net.imglib2.transform.Transform
-
Returns n, the dimension of the source vector.
- numTargetDimensions - Variable in class net.imglib2.transform.integer.AbstractMixedTransform
-
dimension of target vector.
- numTargetDimensions - Variable in class net.imglib2.transform.integer.permutation.PermutationTransform
- numTargetDimensions - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- numTargetDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
-
dimension of target vector.
- numTargetDimensions() - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- numTargetDimensions() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
- numTargetDimensions() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- numTargetDimensions() - Method in class net.imglib2.transform.integer.SequentializeTransform
- numTargetDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
- numTargetDimensions() - Method in class net.imglib2.transform.InverseTransform
- numTargetDimensions() - Method in interface net.imglib2.transform.Transform
-
Returns m, the dimension of the target vector.
O
- offset - Variable in class net.imglib2.img.array.AbstractArrayCursor
-
Offset of this cursor
- offset - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Offset of this cursor.
- offset - Variable in class net.imglib2.position.transform.FloorOffset
- offset(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
-
Translate such that pixel at offset in randomAccessible is at the origin in the resulting view.
- offset(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
-
Translate such that pixel at offset in interval is at the origin in the resulting view.
- OffsetableIntervalIterator - Class in net.imglib2.iterator
-
A
IntervalIterator
that has an adjustable offset - OffsetableIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
- OffsetableIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
- OffsetableIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
- OffsetableIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
- OffsetableIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
- OffsetableLocalizingIntervalIterator - Class in net.imglib2.iterator
-
A
LocalizingIntervalIterator
that has an adjustable offset - OffsetableLocalizingIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
- OffsetableLocalizingIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
- OffsetableLocalizingIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
- OffsetableLocalizingIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
- OffsetableLocalizingIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
- offsetInterval(RandomAccessible<T>, long[], long[]) - Static method in class net.imglib2.view.Views
-
Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.
- offsetInterval(RandomAccessible<T>, Interval) - Static method in class net.imglib2.view.Views
-
Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.
- oobCellMax - Variable in class net.imglib2.img.cell.CellRandomAccess
- oobCellMin - Variable in class net.imglib2.img.cell.CellRandomAccess
- or(boolean) - Method in class net.imglib2.type.logic.BoolType
- or(BitType) - Method in class net.imglib2.type.logic.BitType
- or(BoolType) - Method in class net.imglib2.type.logic.BoolType
- or(T) - Method in interface net.imglib2.type.BooleanType
- orderMinMax() - Method in class net.imglib2.transform.integer.BoundingBox
-
flip coordinates between corner1 and corner2 such that corner1 is the min of the bounding box and corner2 is the max.
- outer(double[], double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute outer product, set C = a * b^T.
- outOfBounds - Variable in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
-
performs the actual moves and generates/queries a Type
- OutOfBounds<T> - Interface in net.imglib2.outofbounds
- OutOfBoundsBorder<T> - Class in net.imglib2.outofbounds
-
Repeat the boundary pixels.
- OutOfBoundsBorder(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorder
- OutOfBoundsBorder(OutOfBoundsBorder<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorder
- OutOfBoundsBorderFactory<T,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
-
Strategy to repeat the boundary pixels (creates
OutOfBoundsBorder
). - OutOfBoundsBorderFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorderFactory
- OutOfBoundsConstantValue<T extends Type<T>> - Class in net.imglib2.outofbounds
- OutOfBoundsConstantValue(F, T) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValue
- OutOfBoundsConstantValue(OutOfBoundsConstantValue<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValue
- OutOfBoundsConstantValueFactory<T extends Type<T>,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
- OutOfBoundsConstantValueFactory(T) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
- OutOfBoundsFactory<T,F> - Interface in net.imglib2.outofbounds
- OutOfBoundsMirrorDoubleBoundary<T> - Class in net.imglib2.outofbounds
-
Coordinates out of image bounds are mirrored between boundary coordinates.
- OutOfBoundsMirrorDoubleBoundary(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
- OutOfBoundsMirrorDoubleBoundary(OutOfBoundsMirrorDoubleBoundary<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
- OutOfBoundsMirrorExpWindowing<T extends NumericType<T>> - Class in net.imglib2.outofbounds
-
Adds a exponential windowing to the mirrored content outside the Interval boundaries
- OutOfBoundsMirrorExpWindowing(F, int[], float) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
- OutOfBoundsMirrorExpWindowing(OutOfBoundsMirrorExpWindowing<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
- OutOfBoundsMirrorExpWindowingFactory<T extends NumericType<T>,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
-
TODO
- OutOfBoundsMirrorExpWindowingFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- OutOfBoundsMirrorExpWindowingFactory(float) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- OutOfBoundsMirrorExpWindowingFactory(int) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- OutOfBoundsMirrorExpWindowingFactory(int[]) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- OutOfBoundsMirrorFactory<T,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
-
Create appropriate strategies that virtually mirror a
RandomAccessible
at its boundaries. - OutOfBoundsMirrorFactory(OutOfBoundsMirrorFactory.Boundary) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
- OutOfBoundsMirrorFactory.Boundary - Enum in net.imglib2.outofbounds
- OutOfBoundsMirrorSingleBoundary<T> - Class in net.imglib2.outofbounds
-
Coordinates out of image bounds are mirrored at boundary coordinates.
- OutOfBoundsMirrorSingleBoundary(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
- OutOfBoundsMirrorSingleBoundary(OutOfBoundsMirrorSingleBoundary<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
- OutOfBoundsPeriodic<T> - Class in net.imglib2.outofbounds
-
Coordinates out of image bounds are periodically repeated.
- OutOfBoundsPeriodic(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodic
- OutOfBoundsPeriodic(OutOfBoundsPeriodic<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodic
- OutOfBoundsPeriodicFactory<T,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
-
Create appropriate strategies that virtually extend a
RandomAccessibleInterval
periodically. - OutOfBoundsPeriodicFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodicFactory
- outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
- outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- OutOfBoundsRandomValue<T extends RealType<T>> - Class in net.imglib2.outofbounds
-
Return a random value in a certain range when outside of the Interval
- OutOfBoundsRandomValue(F, T, Random, double, double) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValue
- OutOfBoundsRandomValue(OutOfBoundsRandomValue<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValue
- OutOfBoundsRandomValueFactory<T extends RealType<T>,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
- OutOfBoundsRandomValueFactory(T, double, double) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
P
- p - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
-
Period of the extended interval.
- pair(RandomAccessible<A>, RandomAccessible<B>) - Static method in class net.imglib2.view.Views
- Pair<A,B> - Interface in net.imglib2.util
- Partition - Class in net.imglib2.util
-
TODO
- Partition() - Constructor for class net.imglib2.util.Partition
- partitionSubList(int, int, byte[]) - Static method in class net.imglib2.util.Partition
-
Partition a subarray of
values
. - partitionSubList(int, int, char[]) - Static method in class net.imglib2.util.Partition
-
Partition a subarray of
values
. - partitionSubList(int, int, double[]) - Static method in class net.imglib2.util.Partition
-
Partition a subarray of
values
. - partitionSubList(int, int, float[]) - Static method in class net.imglib2.util.Partition
-
Partition a subarray of
values
. - partitionSubList(int, int, int[]) - Static method in class net.imglib2.util.Partition
-
Partition a subarray of
values
. - partitionSubList(int, int, long[]) - Static method in class net.imglib2.util.Partition
-
Partition a subarray of
values
. - partitionSubList(int, int, short[]) - Static method in class net.imglib2.util.Partition
-
Partition a subarray of
values
. - partitionSubList(int, int, List<T>) - Static method in class net.imglib2.util.Partition
-
Partition a sublist of
values
. - partitionSubList(int, int, List<T>, int[]) - Static method in class net.imglib2.util.Partition
-
Partition a sublist of
values
. - partitionSubList(int, int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.Partition
-
Partition a sublist of
values
. - partitionSubList(int, int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.Partition
-
Partition a sublist of
values
. - partitionSubList(ListIterator<T>, ListIterator<T>) - Static method in class net.imglib2.util.Partition
-
Partition a sublist.
- partitionSubList(ListIterator<T>, ListIterator<T>, int[]) - Static method in class net.imglib2.util.Partition
-
Partition a sublist.
- partitionSubList(ListIterator<T>, ListIterator<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.Partition
-
Partition a sublist.
- partitionSubList(ListIterator<T>, ListIterator<T>, Comparator<? super T>) - Static method in class net.imglib2.util.Partition
-
Partition a sublist.
- pastMax - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
- pastMax - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- percentile(double[], double) - Static method in class net.imglib2.util.Util
-
Computes the percentile of a collection of doubles (percentile 0.5 roughly corresponds to median)
- PermutationTransform - Class in net.imglib2.transform.integer.permutation
-
Bijective integer transform mapping between integer coordinates in [0,n-1].
- PermutationTransform(int[], int, int) - Constructor for class net.imglib2.transform.integer.permutation.PermutationTransform
- permute(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
-
Create view with permuted axes.
- permute(RandomAccessibleInterval<T>, int, int) - Static method in class net.imglib2.view.Views
-
Create view with permuted axes.
- permuteCoordinateInverse(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
- permuteCoordinates(RandomAccessibleInterval<T>, int[]) - Static method in class net.imglib2.view.Views
-
Bijective permutation of the integer coordinates in each dimension of a
RandomAccessibleInterval
. - permuteCoordinates(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
-
Bijective permutation of the integer coordinates of one dimension of a
RandomAccessibleInterval
. - permuteCoordinatesInverse(RandomAccessibleInterval<T>, int[]) - Static method in class net.imglib2.view.Views
-
Inverse Bijective permutation of the integer coordinates in each dimension of a
RandomAccessibleInterval
. - permuteCoordinatesInverse(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
-
Inverse bijective permutation of the integer coordinates of one dimension of a
RandomAccessibleInterval
. - piSquare - Static variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- PlanarAccess<A> - Interface in net.imglib2.img.basictypeaccess
-
Interface allowing access to data on a plane-by-plane basis.
- PlanarCursor<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
Basic Iterator for
PlanarContainers
- PlanarCursor(PlanarCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarCursor
- PlanarCursor(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor
- PlanarCursor1D<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
Basic Iterator for 1d
PlanarContainers
- PlanarCursor1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor1D
- PlanarCursor2D<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
Basic Iterator for 2d
PlanarContainers
- PlanarCursor2D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor2D
- PlanarImg<T extends NativeType<T>,A extends ArrayDataAccess<A>> - Class in net.imglib2.img.planar
-
A
NativeImg
that stores data in an list of primitive arrays, one per image plane. - PlanarImg(long[], Fraction) - Constructor for class net.imglib2.img.planar.PlanarImg
- PlanarImg.PlanarContainerSampler - Interface in net.imglib2.img.planar
-
This interface is implemented by all samplers on the
PlanarImg
. - PlanarImgContainerSamplerImpl - Class in net.imglib2.display.projector.specialized
-
Helps to sample a planar image by keeping track of the current slice.
- PlanarImgContainerSamplerImpl(int) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
- PlanarImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
Factory that creates an appropriate
PlanarImg
. - PlanarImgFactory() - Constructor for class net.imglib2.img.planar.PlanarImgFactory
- PlanarImgs - Class in net.imglib2.img.planar
- PlanarImgXYByteProjector<A extends GenericByteType<A>> - Class in net.imglib2.display.projector.specialized
-
Fast implementation of a
AbstractProjector2D
that selects a 2D data plain from a ByteType PlanarImg. - PlanarImgXYByteProjector(PlanarImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgXYByteProjector
-
Normalizes a PlanarImg and writes the result into target.
- PlanarImgXYShortProjector<A extends GenericShortType<A>> - Class in net.imglib2.display.projector.specialized
-
Fast implementation of a
AbstractProjector2D
that selects a 2D data plain from an ShortType PlanarImg. - PlanarImgXYShortProjector(PlanarImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgXYShortProjector
-
Normalizes a PlanarImg and writes the result into target.
- PlanarLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
Localizing Iterator for a
PlanarContainers
- PlanarLocalizingCursor(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor
- PlanarLocalizingCursor(PlanarLocalizingCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor
- PlanarLocalizingCursor1D<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
TODO
- PlanarLocalizingCursor1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor1D
- PlanarLocalizingCursor1D(PlanarLocalizingCursor1D<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor1D
- PlanarLocalizingCursor2D<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
TODO
- PlanarLocalizingCursor2D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor2D
- PlanarLocalizingCursor2D(PlanarLocalizingCursor2D<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor2D
- PlanarPlaneSubsetCursor<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
Basic Iterator for
PlanarContainers
- PlanarPlaneSubsetCursor(PlanarImg<T, ?>, Interval) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Constructor
- PlanarPlaneSubsetCursor(PlanarPlaneSubsetCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Copy Constructor
- PlanarPlaneSubsetLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
Cursor optimized for one plane in an PlanarImg.
- PlanarPlaneSubsetLocalizingCursor(PlanarImg<T, ?>, Interval) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
-
Constructor
- PlanarPlaneSubsetLocalizingCursor(PlanarPlaneSubsetLocalizingCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
-
Copy Constructor
- PlanarRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
RandomAccess
on aPlanarImg
. - PlanarRandomAccess(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess
- PlanarRandomAccess(PlanarRandomAccess<T>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess
- PlanarRandomAccess1D<T extends NativeType<T>> - Class in net.imglib2.img.planar
-
RandomAccess
for a 1-dimensionalPlanarImg
. - PlanarRandomAccess1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess1D
- Point - Class in net.imglib2
-
A Point is a position in Euclidean space specified in integer coordinates.
- Point(int) - Constructor for class net.imglib2.Point
-
Create a point in nDimensional space initialized to 0,0,...
- Point(int...) - Constructor for class net.imglib2.Point
-
Create a point at a definite location in a space of the dimensionality of the position.
- Point(long...) - Constructor for class net.imglib2.Point
-
Create a point at a definite location in a space of the dimensionality of the position.
- Point(long[], boolean) - Constructor for class net.imglib2.Point
-
Protected constructor that can re-use the passed position array.
- Point(Localizable) - Constructor for class net.imglib2.Point
-
Create a point using the position and dimensionality of a
Localizable
- PointSampleList<T> - Class in net.imglib2
-
A list of data samples at explicit
integer coordinates
. - PointSampleList(int) - Constructor for class net.imglib2.PointSampleList
- PointSampleList.PointSampleListCursor - Class in net.imglib2
- PointSampleListCursor() - Constructor for class net.imglib2.PointSampleList.PointSampleListCursor
- pos - Variable in class net.imglib2.KDTreeNode
-
coordinates of the node.
- pos - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- pos - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- pos - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- position - Variable in class net.imglib2.AbstractLocalizable
-
The
Localizable
interface is implemented using the position stored here. - position - Variable in class net.imglib2.AbstractLocalizableInt
-
The
Localizable
interface is implemented using the position stored here. - position - Variable in class net.imglib2.AbstractRealLocalizable
-
The
RealLocalizable
interface is implemented using the position stored here. - position - Variable in class net.imglib2.iterator.LocalizingIntervalIterator
- position - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
- position - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
- position - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- position - Variable in class net.imglib2.view.HyperSlice
- Positionable - Interface in net.imglib2
-
An element that can be positioned in n-dimensional discrete space.
- positionToIndex(int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
- positionToIndex(long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
- positionToIndex(long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
- positionToIndex(Localizable, Dimensions) - Static method in class net.imglib2.util.IntervalIndexer
- positionWithOffsetToIndex(int[], int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
- positionWithOffsetToIndex(long[], int[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
- positionWithOffsetToIndex(long[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
- pow(int, int) - Static method in class net.imglib2.util.Util
- preComputeWeights(int, int[], float) - Static method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
- PreConcatenable<A> - Interface in net.imglib2.concatenate
-
If T implements
PreConcatenable
<A>
that means you can pre-concatenate it with an A, usually resulting in another T. - preConcatenate(A) - Method in interface net.imglib2.concatenate.PreConcatenable
-
Pre-concatenate this object with a.
- preConcatenate(ComponentMapping) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
- preConcatenate(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
- preConcatenate(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
- preConcatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
- preConcatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
- prependTransform(Transform) - Method in class net.imglib2.view.TransformBuilder
-
Prepend a transform to the
TransformBuilder.transforms
list. - print(List<?>) - Static method in class net.imglib2.concatenate.ConcatenateUtils
- printCoordinates(boolean[]) - Static method in class net.imglib2.util.Util
- printCoordinates(double[]) - Static method in class net.imglib2.util.Util
- printCoordinates(float[]) - Static method in class net.imglib2.util.Util
- printCoordinates(int[]) - Static method in class net.imglib2.util.Util
- printCoordinates(long[]) - Static method in class net.imglib2.util.Util
- printCoordinates(RealLocalizable) - Static method in class net.imglib2.util.Util
- printInterval(Interval) - Static method in class net.imglib2.util.Util
- products - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- ProjectedSampler<T> - Interface in net.imglib2.display.projector.sampler
-
provides samples from a projected (
SamplingProjector2D
) dimension. - Projector - Interface in net.imglib2.display.projector
Q
- quaternionApply(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
Apply quaternion rotation q to 3D point p, set qp = q * p.
- quaternionFromAngleAxis(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute a quaternion from rotation axis and angle.
- quaternionFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute a unit quaternion from a rotation matrix.
- quaternionInvert(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
invert quaternion, set q = p^{-1}.
- quaternionMultiply(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute the quaternion product pq = p * q.
- quaternionPower(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute the power of a quaternion q raised to the exponent a.
- quaternionToR(double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
compute a rotation matrix from a unit quaternion.
- quicksort(double[]) - Static method in class net.imglib2.util.Util
- quicksort(double[], int[], int, int) - Static method in class net.imglib2.util.Util
- quicksort(double[], int, int) - Static method in class net.imglib2.util.Util
- quicksort(float[]) - Static method in class net.imglib2.util.Util
- quicksort(float[], int, int) - Static method in class net.imglib2.util.Util
- quicksort(long[], int, int) - Static method in class net.imglib2.util.Util
R
- r - Variable in class net.imglib2.type.numeric.ARGBDoubleType
- R - net.imglib2.converter.ChannelARGBConverter.Channel
- RadiusNeighborSearch<T> - Interface in net.imglib2.neighborsearch
-
Radius neighbor search in an Euclidean space.
- RadiusNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
-
Implementation of
RadiusNeighborSearch
search for kd-trees. - RadiusNeighborSearchOnKDTree(KDTree<T>) - Constructor for class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- randomAccess() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- randomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
- randomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
- randomAccess() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
- randomAccess() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
- randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
- randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
- randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
- randomAccess() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- randomAccess() - Method in class net.imglib2.histogram.Histogram1d
- randomAccess() - Method in class net.imglib2.histogram.HistogramNd
- randomAccess() - Method in class net.imglib2.img.array.ArrayImg
- randomAccess() - Method in class net.imglib2.img.cell.AbstractCellImg
- randomAccess() - Method in class net.imglib2.img.list.AbstractListImg
- randomAccess() - Method in class net.imglib2.img.list.AbstractLongListImg
- randomAccess() - Method in class net.imglib2.img.planar.PlanarImg
- randomAccess() - Method in class net.imglib2.img.sparse.NtreeImg
- randomAccess() - Method in interface net.imglib2.RandomAccessible
-
Create a random access sampler for integer coordinates.
- randomAccess() - Method in class net.imglib2.view.composite.CompositeView
- randomAccess() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
- randomAccess() - Method in class net.imglib2.view.HyperSlice
- randomAccess() - Method in class net.imglib2.view.HyperSlicesView
- randomAccess() - Method in class net.imglib2.view.IntervalView
- randomAccess() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
- randomAccess() - Method in class net.imglib2.view.MixedTransformView
- randomAccess() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
- randomAccess() - Method in class net.imglib2.view.RandomAccessiblePair
- randomAccess() - Method in class net.imglib2.view.StackView
- randomAccess() - Method in class net.imglib2.view.SubsampleView
- randomAccess() - Method in class net.imglib2.view.TransformView
- randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
- randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
- randomAccess(Interval) - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
- randomAccess(Interval) - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
- randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
- randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
- randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
- randomAccess(Interval) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- randomAccess(Interval) - Method in class net.imglib2.histogram.Histogram1d
- randomAccess(Interval) - Method in class net.imglib2.histogram.HistogramNd
- randomAccess(Interval) - Method in class net.imglib2.img.AbstractImg
- randomAccess(Interval) - Method in class net.imglib2.img.array.ArrayImg
- randomAccess(Interval) - Method in interface net.imglib2.RandomAccessible
-
Create a random access sampler for integer coordinates.
- randomAccess(Interval) - Method in class net.imglib2.view.composite.CompositeView
- randomAccess(Interval) - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
- randomAccess(Interval) - Method in class net.imglib2.view.HyperSlice
- randomAccess(Interval) - Method in class net.imglib2.view.HyperSlicesView
- randomAccess(Interval) - Method in class net.imglib2.view.IntervalView
- randomAccess(Interval) - Method in class net.imglib2.view.IterableRandomAccessibleInterval
- randomAccess(Interval) - Method in class net.imglib2.view.MixedTransformView
- randomAccess(Interval) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
- randomAccess(Interval) - Method in class net.imglib2.view.RandomAccessiblePair
- randomAccess(Interval) - Method in class net.imglib2.view.StackView
- randomAccess(Interval) - Method in class net.imglib2.view.SubsampleView
- randomAccess(Interval) - Method in class net.imglib2.view.TransformView
- RandomAccess<T> - Interface in net.imglib2
- RandomAccess() - Constructor for class net.imglib2.view.RandomAccessiblePair.RandomAccess
- RandomAccessible<T> - Interface in net.imglib2
-
f:Zn→T
- RandomAccessibleInterval<T> - Interface in net.imglib2
-
f:{x∈Zn|[min,max]→T}
- RandomAccessibleIntervalCursor<T> - Class in net.imglib2.view
-
A
Cursor
that iterates anyRandomAccessibleInterval
by moving aRandomAccess
in flat iteration order. - RandomAccessibleIntervalCursor(I) - Constructor for class net.imglib2.view.RandomAccessibleIntervalCursor
- RandomAccessibleIntervalCursor(RandomAccessibleIntervalCursor<T>) - Constructor for class net.imglib2.view.RandomAccessibleIntervalCursor
- RandomAccessibleOnRealRandomAccessible<T> - Class in net.imglib2.view
- RandomAccessibleOnRealRandomAccessible(RealRandomAccessible<T>) - Constructor for class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
- RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible - Class in net.imglib2.view
- RandomAccessiblePair<A,B> - Class in net.imglib2.view
-
A
RandomAccessible
over two independentRandomAccessibles
whose type is thePair
of corresponding values at the same coordinates in either of the two sources. - RandomAccessiblePair(RandomAccessible<A>, RandomAccessible<B>) - Constructor for class net.imglib2.view.RandomAccessiblePair
- RandomAccessiblePair.RandomAccess - Class in net.imglib2.view
- RandomAccessibleProjector2D<A,B> - Class in net.imglib2.display.projector
-
A general 2D Projector that uses two dimensions as input to create the 2D result.
- RandomAccessibleProjector2D(int, int, RandomAccessible<A>, RandomAccessibleInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.RandomAccessibleProjector2D
-
creates a new 2D projector that samples a plain in the dimensions dimX, dimY.
- randomAccessOnCells - Variable in class net.imglib2.img.cell.CellRandomAccess
- RandomAccessOnRealRandomAccessible(RealRandomAccess<T>) - Constructor for class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- range - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
- raster(RealRandomAccessible<T>) - Static method in class net.imglib2.view.Views
-
Turns a
RealRandomAccessible
into aRandomAccessible
, providingRandomAccess
at integer coordinates. - Real1dBinMapper<T extends RealType<T>> - Class in net.imglib2.histogram
-
Maps real values into a 1-d set of bins.
- Real1dBinMapper(double, double, long, boolean) - Constructor for class net.imglib2.histogram.Real1dBinMapper
-
Specify a mapping of real data from a user defined range into a specified number of bins.
- RealARGBConverter<R extends RealType<?>> - Class in net.imglib2.converter
- RealARGBConverter() - Constructor for class net.imglib2.converter.RealARGBConverter
- RealARGBConverter(double, double) - Constructor for class net.imglib2.converter.RealARGBConverter
- RealComposite<T extends RealType<T>> - Class in net.imglib2.view.composite
-
A vector of
RealType
scalars. - RealComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.RealComposite
- RealComposite.Factory<T extends RealType<T>> - Class in net.imglib2.view.composite
- RealCursor<T> - Interface in net.imglib2
-
A RealCursor iterates over a set of RealLocalizable elements, for example intensity values sampled at a finite set of arbitrary real positions.
- RealDoubleConverter<R extends RealType<R>> - Class in net.imglib2.converter
-
Converts any
RealType
to aDoubleType
. - RealDoubleConverter() - Constructor for class net.imglib2.converter.RealDoubleConverter
- RealDoubleSamplerConverter<R extends RealType<R>> - Class in net.imglib2.converter.readwrite
-
TODO
- RealDoubleSamplerConverter() - Constructor for class net.imglib2.converter.readwrite.RealDoubleSamplerConverter
- RealFloatConverter<R extends RealType<R>> - Class in net.imglib2.converter
- RealFloatConverter() - Constructor for class net.imglib2.converter.RealFloatConverter
- RealFloatSamplerConverter<R extends RealType<R>> - Class in net.imglib2.converter.readwrite
-
TODO
- RealFloatSamplerConverter() - Constructor for class net.imglib2.converter.readwrite.RealFloatSamplerConverter
- RealInterval - Interface in net.imglib2
-
{x∈Rn|mind≤ xd≤maxd;d∈{0… n-1}}
- RealLocalizable - Interface in net.imglib2
-
The
RealLocalizable
interface can localize itself in an n-dimensional real space. - RealLUTConverter<R extends RealType<R>> - Class in net.imglib2.converter
-
RealLUTConverter contains a
ColorTable8
, through which samples are filtered. - RealLUTConverter() - Constructor for class net.imglib2.converter.RealLUTConverter
- RealLUTConverter(double, double, ColorTable) - Constructor for class net.imglib2.converter.RealLUTConverter
- realMax() - Method in class net.imglib2.histogram.Histogram1d
- realMax(double[]) - Method in class net.imglib2.AbstractInterval
- realMax(double[]) - Method in class net.imglib2.AbstractRealInterval
- realMax(double[]) - Method in class net.imglib2.AbstractWrappedRealInterval
- realMax(double[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- realMax(double[]) - Method in class net.imglib2.histogram.Histogram1d
- realMax(double[]) - Method in class net.imglib2.histogram.HistogramNd
- realMax(double[]) - Method in class net.imglib2.img.AbstractImg
- realMax(double[]) - Method in class net.imglib2.KDTree
- realMax(double[]) - Method in interface net.imglib2.RealInterval
-
Write the maximum of each dimension into double[].
- realMax(double[]) - Method in class net.imglib2.RealPointSampleList
- realMax(double[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
- realMax(double[]) - Method in class net.imglib2.view.SubsampleIntervalView
- realMax(int) - Method in class net.imglib2.AbstractInterval
- realMax(int) - Method in class net.imglib2.AbstractRealInterval
- realMax(int) - Method in class net.imglib2.AbstractWrappedRealInterval
- realMax(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- realMax(int) - Method in class net.imglib2.histogram.Histogram1d
- realMax(int) - Method in class net.imglib2.histogram.HistogramNd
- realMax(int) - Method in class net.imglib2.img.AbstractImg
- realMax(int) - Method in class net.imglib2.KDTree
- realMax(int) - Method in interface net.imglib2.RealInterval
-
Get the maximum in dimension d.
- realMax(int) - Method in class net.imglib2.RealPointSampleList
- realMax(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
- realMax(int) - Method in class net.imglib2.view.SubsampleIntervalView
- realMax(RealPositionable) - Method in class net.imglib2.AbstractInterval
- realMax(RealPositionable) - Method in class net.imglib2.AbstractRealInterval
- realMax(RealPositionable) - Method in class net.imglib2.AbstractWrappedRealInterval
- realMax(RealPositionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- realMax(RealPositionable) - Method in class net.imglib2.histogram.Histogram1d
- realMax(RealPositionable) - Method in class net.imglib2.histogram.HistogramNd
- realMax(RealPositionable) - Method in class net.imglib2.img.AbstractImg
- realMax(RealPositionable) - Method in class net.imglib2.KDTree
- realMax(RealPositionable) - Method in interface net.imglib2.RealInterval
-
Sets a
RealPositionable
to the maximum of thisInterval
- realMax(RealPositionable) - Method in class net.imglib2.RealPointSampleList
- realMax(RealPositionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
- realMax(RealPositionable) - Method in class net.imglib2.view.SubsampleIntervalView
- realMin() - Method in class net.imglib2.histogram.Histogram1d
- realMin(double[]) - Method in class net.imglib2.AbstractInterval
- realMin(double[]) - Method in class net.imglib2.AbstractRealInterval
- realMin(double[]) - Method in class net.imglib2.AbstractWrappedRealInterval
- realMin(double[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- realMin(double[]) - Method in class net.imglib2.histogram.Histogram1d
- realMin(double[]) - Method in class net.imglib2.histogram.HistogramNd
- realMin(double[]) - Method in class net.imglib2.img.AbstractImg
- realMin(double[]) - Method in class net.imglib2.KDTree
- realMin(double[]) - Method in interface net.imglib2.RealInterval
-
Write the minimum of each dimension into double[].
- realMin(double[]) - Method in class net.imglib2.RealPointSampleList
- realMin(double[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
- realMin(double[]) - Method in class net.imglib2.view.SubsampleIntervalView
- realMin(int) - Method in class net.imglib2.AbstractInterval
- realMin(int) - Method in class net.imglib2.AbstractRealInterval
- realMin(int) - Method in class net.imglib2.AbstractWrappedRealInterval
- realMin(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- realMin(int) - Method in class net.imglib2.histogram.Histogram1d
- realMin(int) - Method in class net.imglib2.histogram.HistogramNd
- realMin(int) - Method in class net.imglib2.img.AbstractImg
- realMin(int) - Method in class net.imglib2.KDTree
- realMin(int) - Method in interface net.imglib2.RealInterval
-
Get the minimum in dimension d.
- realMin(int) - Method in class net.imglib2.RealPointSampleList
- realMin(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
- realMin(int) - Method in class net.imglib2.view.SubsampleIntervalView
- realMin(RealPositionable) - Method in class net.imglib2.AbstractInterval
- realMin(RealPositionable) - Method in class net.imglib2.AbstractRealInterval
- realMin(RealPositionable) - Method in class net.imglib2.AbstractWrappedRealInterval
- realMin(RealPositionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- realMin(RealPositionable) - Method in class net.imglib2.histogram.Histogram1d
- realMin(RealPositionable) - Method in class net.imglib2.histogram.HistogramNd
- realMin(RealPositionable) - Method in class net.imglib2.img.AbstractImg
- realMin(RealPositionable) - Method in class net.imglib2.KDTree
- realMin(RealPositionable) - Method in interface net.imglib2.RealInterval
-
Sets a
RealPositionable
to the minimum of thisInterval
- realMin(RealPositionable) - Method in class net.imglib2.RealPointSampleList
- realMin(RealPositionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
- realMin(RealPositionable) - Method in class net.imglib2.view.SubsampleIntervalView
- RealOutOfBounds<T> - Interface in net.imglib2.outofbounds
- RealOutOfBoundsFactory<T,F> - Interface in net.imglib2.outofbounds
- RealOutOfBoundsRealRandomAccess<T> - Class in net.imglib2.outofbounds
- RealOutOfBoundsRealRandomAccess(int, RealOutOfBounds<T>) - Constructor for class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- RealOutOfBoundsRealRandomAccess(RealOutOfBoundsRealRandomAccess<T>) - Constructor for class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- RealPoint - Class in net.imglib2
-
A point is a location in EuclideanSpace.
- RealPoint(double...) - Constructor for class net.imglib2.RealPoint
-
Create a point at a definite location in a space of the dimensionality of the position.
- RealPoint(double[], boolean) - Constructor for class net.imglib2.RealPoint
-
Protected constructor that can re-use the passed position array.
- RealPoint(float...) - Constructor for class net.imglib2.RealPoint
-
Create a point at a definite location in a space of the dimensionality of the position.
- RealPoint(int) - Constructor for class net.imglib2.RealPoint
-
Create a point in nDimensional space initialized to 0,0,...
- RealPoint(RealLocalizable) - Constructor for class net.imglib2.RealPoint
-
Create a point using the position and dimensionality of a
RealLocalizable
- RealPointSampleList<T> - Class in net.imglib2
-
A list of data samples at explicit
real coordinates
. - RealPointSampleList(int) - Constructor for class net.imglib2.RealPointSampleList
- RealPointSampleList.RealPointSampleListCursor - Class in net.imglib2
- RealPointSampleListCursor() - Constructor for class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- RealPositionable - Interface in net.imglib2
-
An element that can be positioned in n-dimensional real space.
- realRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
- realRandomAccess() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
- realRandomAccess() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
- realRandomAccess() - Method in class net.imglib2.interpolation.Interpolant
- realRandomAccess() - Method in interface net.imglib2.RealRandomAccessible
-
Create a random access sampler for real coordinates.
- realRandomAccess() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
- realRandomAccess(RealInterval) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
- realRandomAccess(RealInterval) - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
- realRandomAccess(RealInterval) - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
- realRandomAccess(RealInterval) - Method in class net.imglib2.interpolation.Interpolant
- realRandomAccess(RealInterval) - Method in interface net.imglib2.RealRandomAccessible
- realRandomAccess(RealInterval) - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
- RealRandomAccess<T> - Interface in net.imglib2
- RealRandomAccessible<T> - Interface in net.imglib2
-
f:Rn→T
- RealRandomAccessibleRealInterval<T> - Interface in net.imglib2
-
f:{x∈Rn|[min,max]→T}
- RealSum - Class in net.imglib2.util
-
RealSum
implements a method to reduce numerical instabilities when summing up a very large number of double precision numbers. - RealSum() - Constructor for class net.imglib2.util.RealSum
-
Create a new
RealSum
. - RealSum(int) - Constructor for class net.imglib2.util.RealSum
-
Create a new
RealSum
. - RealType<T extends RealType<T>> - Interface in net.imglib2.type.numeric
-
TODO
- RealUnsignedByteConverter<R extends RealType<R>> - Class in net.imglib2.converter
- RealUnsignedByteConverter() - Constructor for class net.imglib2.converter.RealUnsignedByteConverter
- RealUnsignedByteConverter(double, double) - Constructor for class net.imglib2.converter.RealUnsignedByteConverter
- RealUnsignedShortConverter<R extends RealType<R>> - Class in net.imglib2.converter
- RealUnsignedShortConverter() - Constructor for class net.imglib2.converter.RealUnsignedShortConverter
- RealUnsignedShortConverter(double, double) - Constructor for class net.imglib2.converter.RealUnsignedShortConverter
- red(int) - Static method in class net.imglib2.type.numeric.ARGBType
- RED - Static variable in interface net.imglib2.display.ColorTable
- referenceDimension - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
- referenceLocation - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- referenceLocation - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- relativeFrequency(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Returns the relative frequency
(0 <= f <= 1)
associated with a given bin. - relativeFrequency(long[], boolean) - Method in class net.imglib2.histogram.HistogramNd
-
Returns the relative frequency of values within a bin.
- relativeFrequency(long, boolean) - Method in class net.imglib2.histogram.Histogram1d
-
Returns the relative frequency of values within a bin.
- relativeFrequency(List<T>, boolean) - Method in class net.imglib2.histogram.HistogramNd
-
Returns the relative frequency of values within a bin using a set of representative values.
- relativeFrequency(T, boolean) - Method in class net.imglib2.histogram.Histogram1d
-
Returns the relative frequency of values within a bin using a representative value.
- remove() - Method in class net.imglib2.AbstractCursor
- remove() - Method in class net.imglib2.AbstractCursorInt
- remove() - Method in class net.imglib2.AbstractLocalizingCursor
- remove() - Method in class net.imglib2.AbstractLocalizingCursorInt
- remove() - Method in class net.imglib2.converter.AbstractConvertedCursor
- remove() - Method in class net.imglib2.img.sparse.NtreeCursor
- remove() - Method in class net.imglib2.KDTree.KDTreeCursor
- remove() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- remove() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- remove() - Method in class net.imglib2.view.iteration.SlicingCursor
- remove() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- reset() - Method in class net.imglib2.converter.AbstractConvertedCursor
- reset() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
- reset() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
- reset() - Method in class net.imglib2.img.array.AbstractArrayCursor
- reset() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Reset the
Iterator
, that is put it to where it would be if newly created. - reset() - Method in class net.imglib2.img.cell.CellCursor
- reset() - Method in class net.imglib2.img.cell.CellLocalizingCursor
- reset() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- reset() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- reset() - Method in class net.imglib2.img.list.ListCursor
- reset() - Method in class net.imglib2.img.list.ListLocalizingCursor
- reset() - Method in class net.imglib2.img.planar.PlanarCursor
- reset() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
- reset() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
-
Reset the
Iterator
, that is put it to where it would be if newly created. - reset() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
-
Reset the
Iterator
, that is put it to where it would be if newly created. - reset() - Method in class net.imglib2.iterator.IntervalIterator
- reset() - Method in class net.imglib2.iterator.LocalizingIntervalIterator
- reset() - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
- reset() - Method in interface net.imglib2.Iterator
-
Reset the
Iterator
, that is put it to where it would be if newly created. - reset() - Method in class net.imglib2.KDTree.KDTreeCursor
- reset() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
- reset() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- reset() - Method in class net.imglib2.view.iteration.SlicingCursor
-
Reset the
Iterator
, that is put it to where it would be if newly created. - reset() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
- resetCounters() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Resets all frequency counts to zero.
- resetCounters() - Method in class net.imglib2.histogram.Histogram1d
-
Resets all data counts to 0.
- resetCounters() - Method in class net.imglib2.histogram.HistogramNd
-
Resets all data counts to 0.
- resetKernel() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- resultPoints - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- rgba(double, double, double, double) - Static method in class net.imglib2.type.numeric.ARGBType
- rgba(float, float, float, float) - Static method in class net.imglib2.type.numeric.ARGBType
- rgba(int, int, int, int) - Static method in class net.imglib2.type.numeric.ARGBType
- right - Variable in class net.imglib2.KDTreeNode
-
Right child of this node.
- rnd - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
- rnd - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
- root - Variable in class net.imglib2.KDTree
- rotate(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
-
Create view that is rotated by 90 degrees.
- rotate(RandomAccessibleInterval<T>, int, int) - Static method in class net.imglib2.view.Views
-
Create view that is rotated by 90 degrees.
- round(double) - Static method in class net.imglib2.position.transform.Round
- round(double) - Static method in class net.imglib2.util.Util
- round(double[], long[]) - Static method in class net.imglib2.position.transform.Round
- round(float) - Static method in class net.imglib2.position.transform.Round
- round(float) - Static method in class net.imglib2.util.Util
- round(float[], long[]) - Static method in class net.imglib2.position.transform.Round
- round(RealLocalizable, long[]) - Static method in class net.imglib2.position.transform.Round
- Round<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
-
A
RealPositionable
that drives aPositionable
to its round discrete coordinates:f = r < 0 ? (long)( r - 0.5 ) : (long)( r + 0.5 )
- Round(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Round
- Round(RealLocalizable, LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Round
- roundPositive(double) - Static method in class net.imglib2.display.AbstractLinearRange
- rows(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
- rows(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
S
- sample - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
- sample - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
- sampler - Variable in class net.imglib2.KDTree.SamplerNode
- sampler - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- Sampler<T> - Interface in net.imglib2
-
The
Sampler
interface provides access to a value whose type is specified by the generic parameter T. - SamplerConverter<A,B> - Interface in net.imglib2.converter.readwrite
-
TODO
- SamplerNode(KDTree.SamplerNode<T>) - Constructor for class net.imglib2.KDTree.SamplerNode
- SamplerNode(Sampler<T>, RealLocalizable, int, KDTree.SamplerNode<T>, KDTree.SamplerNode<T>) - Constructor for class net.imglib2.KDTree.SamplerNode
- samples - Variable in class net.imglib2.PointSampleList
- samples - Variable in class net.imglib2.RealPointSampleList
- SamplingProjector2D<A,B> - Class in net.imglib2.display.projector.sampler
-
A general 2D Projector that uses three dimensions as input to create the 2D result.
- SamplingProjector2D(int, int, RandomAccessible<A>, IterableInterval<B>, Converter<ProjectedSampler<A>, B>, int, long[]) - Constructor for class net.imglib2.display.projector.sampler.SamplingProjector2D
- SamplingProjector2D(int, int, RandomAccessibleInterval<A>, IterableInterval<B>, Converter<ProjectedSampler<A>, B>, int) - Constructor for class net.imglib2.display.projector.sampler.SamplingProjector2D
- scale - Static variable in class net.imglib2.converter.ARGBARGBDoubleConverter
- scale - Variable in class net.imglib2.display.AbstractLinearRange
- scale(double[][], double, double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set C = A * b, where A is a matrix and b is scalar.
- scale(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set c = a * b, where a is a vector and b is scalar.
- ScreenImage<T> - Interface in net.imglib2.display.screenimage
-
Toplevel interface for screen images.
- search - Variable in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
- search - Variable in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
- search(RealLocalizable) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
-
Perform k-nearest-neighbor search for a reference coordinate.
- search(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- search(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- search(RealLocalizable) - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
-
Perform nearest-neighbor search for a reference coordinate.
- search(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- search(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- search(RealLocalizable, double, boolean) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
-
Perform neighbor search within a radius about a reference coordinate.
- search(RealLocalizable, double, boolean) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- searchNode(KDTreeNode<T>) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- searchNode(KDTreeNode<T>) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- searchNode(KDTreeNode<T>, double) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- SelectiveSampler<T> - Class in net.imglib2.display.projector.sampler
-
Provides access to a set of predefined positions of a projected dimension
- SelectiveSampler(int, long[]) - Constructor for class net.imglib2.display.projector.sampler.SelectiveSampler
- seqDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
- SequentializeTransform - Class in net.imglib2.transform.integer
-
Transform n-dimensional to m-dimensional coordinates
(m<n)
by flattening dimensions>m
. - SequentializeTransform(long[], int) - Constructor for class net.imglib2.transform.integer.SequentializeTransform
- set(boolean) - Method in interface net.imglib2.type.BooleanType
- set(boolean) - Method in class net.imglib2.type.logic.BitType
- set(boolean) - Method in class net.imglib2.type.logic.BoolType
- set(byte) - Method in class net.imglib2.type.numeric.integer.ByteType
- set(byte[]) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
The first byte is the most significant byte, like in
BigInteger.toByteArray()
. - set(double) - Method in class net.imglib2.type.numeric.real.DoubleType
- set(double, double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- set(double, double, double, double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- set(double, double, double, double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
- set(double, double, double, double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- set(float) - Method in class net.imglib2.type.numeric.real.FloatType
- set(float, float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- set(int) - Method in class net.imglib2.type.numeric.ARGBType
- set(int) - Method in class net.imglib2.type.numeric.integer.IntType
- set(int) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- set(int) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- set(int, T) - Method in class net.imglib2.img.list.AbstractListImg
- set(int, T) - Method in class net.imglib2.img.list.ListImg
- set(long) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- set(long) - Method in class net.imglib2.type.numeric.integer.LongType
- set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
- set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
- set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
- set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- set(long, long) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- set(long, T) - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
- set(long, T) - Method in class net.imglib2.img.list.AbstractLongListImg
- set(short) - Method in class net.imglib2.type.numeric.integer.ShortType
- set(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
- set(BigInteger) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- set(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- set(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
-
set parameters to
transform
. - set(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
-
set parameters to
transform
. - set(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
-
set parameters to
transform
. - set(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
- set(BasePairBitType.Base) - Method in interface net.imglib2.type.BasePairType
- set(BasePairBitType.Base) - Method in class net.imglib2.type.label.BasePairBitType
- set(BasePairBitType.Base) - Method in class net.imglib2.type.label.BasePairCharType
- set(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
- set(BitType) - Method in class net.imglib2.type.logic.BitType
- set(BoolType) - Method in class net.imglib2.type.logic.BoolType
- set(ARGBDoubleType) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- set(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
- set(ComplexDoubleType) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- set(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- set(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- set(NativeARGBDoubleType) - Method in class net.imglib2.type.numeric.ARGBDoubleType
- set(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
- set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
- set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
- set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- set(T) - Method in class net.imglib2.img.list.ListCursor
- set(T) - Method in class net.imglib2.img.list.ListLocalizingCursor
- set(T) - Method in class net.imglib2.img.list.ListRandomAccess
- set(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- set(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- set(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- set(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- set(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- set(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- set(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- set(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- set(T) - Method in interface net.imglib2.type.Type
-
Sets the value of another
Type
. - set(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- set(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setA(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- setA(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
- setA(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- setAlpha(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
-
Set the rectangular radius of the window for perfoming the lanczos interpolation
- setB(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- setB(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
- setB(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.logic.BitType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.logic.BoolType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.ByteType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.IntType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.LongType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.ShortType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setBigInteger(BigInteger) - Method in interface net.imglib2.type.numeric.IntegerType
- setBits(long) - Method in class net.imglib2.type.AbstractBit64Type
-
Sets the lower nBits bits of the long value into the current "subLong" location of the LongAccess Note that "long value" does not refer to math, it is just a way to help to set arbitrary values.
- setByte(byte) - Method in class net.imglib2.type.numeric.integer.GenericByteType
-
Sets the primitive byte value that is used to store this type.
- setChar(char) - Method in class net.imglib2.type.label.BasePairCharType
- setChildren(Ntree.NtreeNode<T>[]) - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
- setClipping(boolean) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
-
The lanczos-interpolation can create values that are bigger or smaller than the original values, so they can be clipped to the range of the
RealType
if wanted - setCol(int, double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set column c of B to vector a.
- setCommonFadeOutDistance(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- setCommonRelativeFadeOutDistance(float) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- setComplexNumber(double, double) - Method in interface net.imglib2.type.numeric.ComplexType
- setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setComplexNumber(double, double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- setComplexNumber(float, float) - Method in interface net.imglib2.type.numeric.ComplexType
- setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setComplexNumber(float, float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
-
Set for each target component, whether the source component it is taken from should be inverted.
- setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
-
Set for each target dimensions from which source dimension it is taken.
- setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.MixedTransform
-
Set for each target dimensions from which source dimension it is taken.
- setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
-
Set for each target dimensions from which source dimension it is taken.
- setComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
-
Set which target dimensions are _not_ taken from source dimensions.
- setComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.SlicingTransform
-
Set which target dimensions are _not_ taken from source dimensions.
- setComposite(boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
-
Toggles composite mode globally.
- setComposite(boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
-
Toggles composite mode globally.
- setComposite(int, boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
-
Toggles the given position index's inclusion in composite values.
- setComposite(int, boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
-
Toggles the given position index's inclusion in composite values.
- setCurrentSlice(int) - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
- setDirty() - Method in interface net.imglib2.Dirty
- setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
- setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
- setElem(int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
- setElem(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- setElem(int, int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
- setElem(int, int, int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
- setElem(int, int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- setElemDouble(int, double) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- setElemDouble(int, int, double) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- setElemFloat(int, float) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- setElemFloat(int, int, float) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
- setExponent(float) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- setFadeOutDistance(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- setFrequency(long[], long) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Sets the frequency count associated with a given bin.
- setG(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- setG(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
- setG(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- setImaginary(double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- setImaginary(double) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- setImaginary(double) - Method in interface net.imglib2.type.numeric.ComplexType
- setImaginary(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setImaginary(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setImaginary(double) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- setImaginary(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setImaginary(float) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- setImaginary(float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- setImaginary(float) - Method in interface net.imglib2.type.numeric.ComplexType
- setImaginary(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setImaginary(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setImaginary(float) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- setImaginary(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setInt(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
-
Sets the primitive int value that is used to store this type.
- setInteger(int) - Method in class net.imglib2.type.logic.BitType
- setInteger(int) - Method in class net.imglib2.type.logic.BoolType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.ByteType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.IntType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.LongType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.ShortType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setInteger(int) - Method in interface net.imglib2.type.numeric.IntegerType
- setInteger(long) - Method in class net.imglib2.type.logic.BitType
- setInteger(long) - Method in class net.imglib2.type.logic.BoolType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.ByteType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.IntType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.LongType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.ShortType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setInteger(long) - Method in interface net.imglib2.type.numeric.IntegerType
- setInverseTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
- setLinkedType(T) - Method in class net.imglib2.img.AbstractNativeImg
- setLinkedType(T) - Method in interface net.imglib2.img.NativeImg
- setLong(long) - Method in class net.imglib2.type.numeric.integer.GenericLongType
-
Sets the primitive long value that is used to store this type.
- setLUT(ColorTable) - Method in class net.imglib2.converter.RealLUTConverter
- setMax(double) - Method in class net.imglib2.display.AbstractLinearRange
- setMax(double) - Method in interface net.imglib2.display.LinearRange
- setMin(double) - Method in class net.imglib2.display.AbstractLinearRange
- setMin(double) - Method in interface net.imglib2.display.LinearRange
- setMin(int[]) - Method in class net.imglib2.iterator.OffsetableIntervalIterator
-
Adjust the offset and reset the iterator
- setMin(int[]) - Method in class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
-
Adjust the offset and reset the iterator
- setMin(long[]) - Method in class net.imglib2.iterator.OffsetableIntervalIterator
-
Adjust the offset and reset the iterator
- setMin(long[]) - Method in class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
-
Adjust the offset and reset the iterator
- setMinFadeOutDistance(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
- setMinMax(double, double) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
- setOne() - Method in class net.imglib2.type.logic.BitType
- setOne() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- setOne() - Method in class net.imglib2.type.numeric.ARGBType
- setOne() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- setOne() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setOne() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- setOne() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- setOne() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- setOne() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- setOne() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- setOne() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setOne() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- setOne() - Method in class net.imglib2.type.numeric.real.FloatType
- setOne() - Method in interface net.imglib2.type.operators.SetOne
- setOne() - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- setOne() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setOne() - Method in class net.imglib2.view.composite.AbstractNumericComposite
- SetOne - Interface in net.imglib2.type.operators
- setPlane(int, A) - Method in interface net.imglib2.img.basictypeaccess.PlanarAccess
- setPlane(int, A) - Method in class net.imglib2.img.planar.PlanarImg
- setPosition(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(double[]) - Method in class net.imglib2.position.transform.Floor
- setPosition(double[]) - Method in class net.imglib2.position.transform.FloorOffset
- setPosition(double[]) - Method in class net.imglib2.position.transform.Round
- setPosition(double[]) - Method in class net.imglib2.RealPoint
- setPosition(double[]) - Method in interface net.imglib2.RealPositionable
-
Set the position of the element.
- setPosition(double, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(double, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(double, int) - Method in class net.imglib2.position.transform.Floor
- setPosition(double, int) - Method in class net.imglib2.position.transform.FloorOffset
- setPosition(double, int) - Method in class net.imglib2.position.transform.Round
- setPosition(double, int) - Method in class net.imglib2.RealPoint
- setPosition(double, int) - Method in interface net.imglib2.RealPositionable
-
Set the position of the element for one dimension.
- setPosition(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(float[]) - Method in class net.imglib2.position.transform.Floor
- setPosition(float[]) - Method in class net.imglib2.position.transform.FloorOffset
- setPosition(float[]) - Method in class net.imglib2.position.transform.Round
- setPosition(float[]) - Method in class net.imglib2.RealPoint
- setPosition(float[]) - Method in interface net.imglib2.RealPositionable
-
Set the position of the element.
- setPosition(float, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(float, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(float, int) - Method in class net.imglib2.position.transform.Floor
- setPosition(float, int) - Method in class net.imglib2.position.transform.FloorOffset
- setPosition(float, int) - Method in class net.imglib2.position.transform.Round
- setPosition(float, int) - Method in class net.imglib2.RealPoint
- setPosition(float, int) - Method in interface net.imglib2.RealPositionable
-
Set the position of the element for one dimension.
- setPosition(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- setPosition(int[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(int[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
- setPosition(int[]) - Method in class net.imglib2.img.cell.CellRandomAccess
- setPosition(int[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- setPosition(int[]) - Method in class net.imglib2.img.list.ListRandomAccess
- setPosition(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- setPosition(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- setPosition(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- setPosition(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- setPosition(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- setPosition(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- setPosition(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- setPosition(int[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(int[]) - Method in class net.imglib2.Point
- setPosition(int[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- setPosition(int[]) - Method in interface net.imglib2.Positionable
-
Set the position of the element.
- setPosition(int[]) - Method in class net.imglib2.RealPoint
- setPosition(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.MixedRandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- setPosition(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.SlicingRandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
- setPosition(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- setPosition(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.TransformRandomAccess
- setPosition(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
- setPosition(int, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- setPosition(int, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(int, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
- setPosition(int, int) - Method in class net.imglib2.img.cell.CellRandomAccess
- setPosition(int, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- setPosition(int, int) - Method in class net.imglib2.img.list.ListRandomAccess
- setPosition(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- setPosition(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- setPosition(int, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- setPosition(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- setPosition(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- setPosition(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- setPosition(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- setPosition(int, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(int, int) - Method in class net.imglib2.Point
- setPosition(int, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- setPosition(int, int) - Method in interface net.imglib2.Positionable
-
Set the position of the element for one dimension.
- setPosition(int, int) - Method in class net.imglib2.RealPoint
- setPosition(int, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.MixedRandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- setPosition(int, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.SlicingRandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.StackView.DefaultRA
- setPosition(int, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- setPosition(int, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.TransformRandomAccess
- setPosition(int, int) - Method in class net.imglib2.view.TranslationRandomAccess
- setPosition(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- setPosition(long[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(long[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
- setPosition(long[]) - Method in class net.imglib2.img.cell.CellRandomAccess
- setPosition(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- setPosition(long[]) - Method in class net.imglib2.img.list.ListRandomAccess
- setPosition(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- setPosition(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- setPosition(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- setPosition(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- setPosition(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- setPosition(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- setPosition(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- setPosition(long[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(long[]) - Method in class net.imglib2.Point
- setPosition(long[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- setPosition(long[]) - Method in interface net.imglib2.Positionable
-
Set the position of the element.
- setPosition(long[]) - Method in class net.imglib2.RealPoint
- setPosition(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.MixedRandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- setPosition(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.SlicingRandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
- setPosition(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- setPosition(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.TransformRandomAccess
- setPosition(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
- setPosition(long, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- setPosition(long, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(long, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
- setPosition(long, int) - Method in class net.imglib2.img.cell.CellRandomAccess
- setPosition(long, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- setPosition(long, int) - Method in class net.imglib2.img.list.ListRandomAccess
- setPosition(long, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- setPosition(long, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- setPosition(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
- setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
- setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- setPosition(long, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(long, int) - Method in class net.imglib2.Point
- setPosition(long, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- setPosition(long, int) - Method in interface net.imglib2.Positionable
-
Set the position of the element for one dimension.
- setPosition(long, int) - Method in class net.imglib2.RealPoint
- setPosition(long, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.MixedRandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- setPosition(long, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.SlicingRandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.StackView.DefaultRA
- setPosition(long, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- setPosition(long, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.TransformRandomAccess
- setPosition(long, int) - Method in class net.imglib2.view.TranslationRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.img.array.ArrayRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.img.cell.CellRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.img.list.ListRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
- setPosition(Localizable) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- setPosition(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
- setPosition(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- setPosition(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- setPosition(Localizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.Point
- setPosition(Localizable) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- setPosition(Localizable) - Method in interface net.imglib2.Positionable
-
Place the element at the same location as a given
Localizable
- setPosition(Localizable) - Method in class net.imglib2.RealPoint
- setPosition(Localizable) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.MixedRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- setPosition(Localizable) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.SlicingRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.StackView.DefaultRA
- setPosition(Localizable) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
- setPosition(Localizable) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.TransformRandomAccess
- setPosition(Localizable) - Method in class net.imglib2.view.TranslationRandomAccess
- setPosition(RealLocalizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- setPosition(RealLocalizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
- setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.Floor
- setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.FloorOffset
- setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.Round
- setPosition(RealLocalizable) - Method in class net.imglib2.RealPoint
- setPosition(RealLocalizable) - Method in interface net.imglib2.RealPositionable
-
Place the element at the same location as a given
RealLocalizable
- setPositionDim0(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
-
Sets the
ArrayRandomAccess
to a certain position in dimension 0 Careful: it assumes that it is only a one-dimensional image, all other dimensions would be set to zero (this saves one subtraction) - setPositionDim0(long) - Method in class net.imglib2.img.array.ArrayRandomAccess
-
Sets the
ArrayRandomAccess
to a certain position in dimension 0 Careful: it assumes that it is only a one-dimensional image, all other dimensions would be set to zero (this saves one subtraction) - setR(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- setR(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
- setR(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- setRandom(Random) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
- setRandomAccess(RandomAccess<T>) - Method in class net.imglib2.display.projector.sampler.IntervalSampler
- setRandomAccess(RandomAccess<T>) - Method in interface net.imglib2.display.projector.sampler.ProjectedSampler
- setRandomAccess(RandomAccess<T>) - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
- setReal(double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- setReal(double) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- setReal(double) - Method in interface net.imglib2.type.numeric.ComplexType
- setReal(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setReal(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- setReal(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setReal(double) - Method in class net.imglib2.type.numeric.real.DoubleType
- setReal(double) - Method in class net.imglib2.type.numeric.real.FloatType
- setReal(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setReal(float) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- setReal(float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- setReal(float) - Method in interface net.imglib2.type.numeric.ComplexType
- setReal(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setReal(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- setReal(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setReal(float) - Method in class net.imglib2.type.numeric.real.DoubleType
- setReal(float) - Method in class net.imglib2.type.numeric.real.FloatType
- setReal(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setRow(int, double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set row r of B to vector a.
- setShort(short) - Method in class net.imglib2.type.numeric.integer.GenericShortType
-
Sets the primitive short value that is used to store this type.
- setTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
- setTranslation(long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
- setTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
- setValid(boolean) - Method in class net.imglib2.Volatile
- setValue(byte) - Method in class net.imglib2.type.numeric.integer.GenericByteType
-
Deprecated.Use
GenericByteType.setByte(byte)
instead. - setValue(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
-
Deprecated.Use
GenericIntType.setInt(int)
instead. - setValue(int, boolean) - Method in class net.imglib2.img.sparse.BooleanNtree
- setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
- setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
- setValue(int, byte) - Method in interface net.imglib2.img.basictypeaccess.ByteAccess
- setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
- setValue(int, byte) - Method in class net.imglib2.img.sparse.ByteNtree
- setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
- setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
- setValue(int, char) - Method in interface net.imglib2.img.basictypeaccess.CharAccess
- setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
- setValue(int, char) - Method in class net.imglib2.img.sparse.CharNtree
- setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
- setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
- setValue(int, double) - Method in interface net.imglib2.img.basictypeaccess.DoubleAccess
- setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
- setValue(int, double) - Method in class net.imglib2.img.sparse.DoubleNtree
- setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
- setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
- setValue(int, float) - Method in interface net.imglib2.img.basictypeaccess.FloatAccess
- setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
- setValue(int, float) - Method in class net.imglib2.img.sparse.FloatNtree
- setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
- setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
- setValue(int, int) - Method in interface net.imglib2.img.basictypeaccess.IntAccess
- setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
- setValue(int, int) - Method in class net.imglib2.img.sparse.IntNtree
- setValue(int, int) - Method in class net.imglib2.img.sparse.NtreeIntAccess
- setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
- setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
- setValue(int, long) - Method in interface net.imglib2.img.basictypeaccess.LongAccess
- setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
- setValue(int, long) - Method in class net.imglib2.img.sparse.LongNtree
- setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
- setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
- setValue(int, short) - Method in interface net.imglib2.img.basictypeaccess.ShortAccess
- setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
- setValue(int, short) - Method in class net.imglib2.img.sparse.ShortNtree
- setValue(long) - Method in class net.imglib2.type.numeric.integer.GenericLongType
-
Deprecated.Use
GenericLongType.setLong(long)
instead. - setValue(short) - Method in class net.imglib2.type.numeric.integer.GenericShortType
-
Deprecated.Use
GenericShortType.setShort(short)
instead. - setValue(T) - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
- setValue(T) - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
- setZero() - Method in class net.imglib2.type.logic.BitType
- setZero() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- setZero() - Method in class net.imglib2.type.numeric.ARGBType
- setZero() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- setZero() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- setZero() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- setZero() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- setZero() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- setZero() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- setZero() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- setZero() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- setZero() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- setZero() - Method in class net.imglib2.type.numeric.real.FloatType
- setZero() - Method in interface net.imglib2.type.operators.SetZero
- setZero() - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- setZero() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- setZero() - Method in class net.imglib2.view.composite.AbstractNumericComposite
- SetZero - Interface in net.imglib2.type.operators
- shear(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
-
Positive shear transform of a RandomAccessible using
ShearTransform
, i.e. - shear(RandomAccessible<T>, Interval, int, int) - Static method in class net.imglib2.view.Views
-
Positive shear transform of a RandomAccessible using
ShearTransform
, i.e. - shearDimension - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
- ShearTransform - Class in net.imglib2.transform.integer.shear
-
Forward implementation of the most simple case of a shear transform: coordinate[ shearDimension ] += coordinate[ referenceDimension ]
- ShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.ShearTransform
- ShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.ShearTransform
-
Protected constructor for passing an inverse to avoid construction of unnecessary objects.
- ShortAccess - Interface in net.imglib2.img.basictypeaccess
-
TODO
- ShortArray - Class in net.imglib2.img.basictypeaccess.array
- ShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ShortArray
- ShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ShortArray
- ShortAWTScreenImage - Class in net.imglib2.display.screenimage.awt
-
A
AWTScreenImage
that is anArrayImg<ShortType, ShortArray>
. - ShortAWTScreenImage(ArrayImg<ShortType, ShortArray>) - Constructor for class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
- ShortAWTScreenImage(ShortType, ShortArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
- ShortNtree - Class in net.imglib2.img.sparse
- ShortNtree(long[], long[], short) - Constructor for class net.imglib2.img.sparse.ShortNtree
- ShortNtree(Ntree<Short>, long[]) - Constructor for class net.imglib2.img.sparse.ShortNtree
- shorts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- shorts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- shorts(short[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- shorts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- ShortType - Class in net.imglib2.type.numeric.integer
-
TODO
- ShortType() - Constructor for class net.imglib2.type.numeric.integer.ShortType
- ShortType(short) - Constructor for class net.imglib2.type.numeric.integer.ShortType
- ShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.ShortType
- ShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.ShortType
- SignedByteDataBuffer - Class in net.imglib2.display.awt
-
DataBuffer that stores signed bytes.
- SignedByteDataBuffer(byte[][], int) - Constructor for class net.imglib2.display.awt.SignedByteDataBuffer
-
Construct a new buffer of signed bytes using the given 2D byte array.
- SignedByteDataBuffer(byte[], int) - Constructor for class net.imglib2.display.awt.SignedByteDataBuffer
-
Construct a new buffer of signed bytes using the given byte array.
- SignedShortDataBuffer - Class in net.imglib2.display.awt
-
DataBuffer that stores signed shorts.
- SignedShortDataBuffer(int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
- SignedShortDataBuffer(int, int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
- SignedShortDataBuffer(short[][], int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
- SignedShortDataBuffer(short[][], int, int[]) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
- SignedShortDataBuffer(short[], int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
- SignedShortDataBuffer(short[], int, int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
- simplifyTransforms() - Method in class net.imglib2.view.TransformBuilder
-
Simplify the
TransformBuilder.transforms
list. - SINGLE - net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
- SingleDimensionPermutationTransform - Class in net.imglib2.transform.integer.permutation
- SingleDimensionPermutationTransform(int[], int, int, int) - Constructor for class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
- size - Variable in class net.imglib2.img.array.AbstractArrayCursor
-
Size of this cursor
- size - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
Size of this cursor.
- size - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
- size - Variable in class net.imglib2.KDTree
-
the number of nodes in the tree.
- size() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
- size() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
- size() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
- size() - Method in class net.imglib2.histogram.Histogram1d
- size() - Method in class net.imglib2.histogram.HistogramNd
- size() - Method in class net.imglib2.img.AbstractImg
- size() - Method in class net.imglib2.img.cell.Cell
- size() - Method in interface net.imglib2.IterableRealInterval
-
Returns the number of elements in this
Function
. - size() - Method in class net.imglib2.KDTree
- size() - Method in class net.imglib2.PointSampleList
- size() - Method in class net.imglib2.RealPointSampleList
- size() - Method in class net.imglib2.view.IntervalView
- size() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
- sliceIndex - Variable in class net.imglib2.img.planar.PlanarCursor
- sliceIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
- sliceIndex - Variable in class net.imglib2.img.planar.PlanarRandomAccess
- sliceSteps - Variable in class net.imglib2.img.planar.PlanarImg
- sliceSteps - Variable in class net.imglib2.img.planar.PlanarRandomAccess
- Slicing - Interface in net.imglib2.transform.integer
-
TODO
- SlicingCursor<T> - Class in net.imglib2.view.iteration
-
Wrap a cursor that runs on a hyperslice and apply coordinate transform on localize calls.
- SlicingCursor(SlicingCursor<T>) - Constructor for class net.imglib2.view.iteration.SlicingCursor
- SlicingRandomAccess<T> - Class in net.imglib2.view
- SlicingRandomAccess(SlicingRandomAccess<T>) - Constructor for class net.imglib2.view.SlicingRandomAccess
- SlicingTransform - Class in net.imglib2.transform.integer
-
Map the components of the source vector to a slice of the target space, for instance transform (x,y) to (x,C,y) where C is a constant.
- SlicingTransform(int, int) - Constructor for class net.imglib2.transform.integer.SlicingTransform
- smallestContainingInterval(RealInterval) - Static method in class net.imglib2.util.Intervals
-
Compute the smallest
Interval
containing the specifiedRealInterval
. - source - Variable in class net.imglib2.converter.AbstractConvertedCursor
- source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccess
- source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccessible
- source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
- source - Variable in class net.imglib2.converter.AbstractConvertedRealRandomAccess
- source - Variable in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
- source - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
- source - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
- source - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
- source - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
- source - Variable in class net.imglib2.interpolation.Interpolant
- source - Variable in class net.imglib2.view.composite.CompositeView
- source - Variable in class net.imglib2.view.ExtendedRandomAccessibleInterval
- source - Variable in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
- source - Variable in class net.imglib2.view.HyperSlice
- source - Variable in class net.imglib2.view.HyperSlicesView
- source - Variable in class net.imglib2.view.IntervalView
-
The source
RandomAccessible
. - source - Variable in class net.imglib2.view.MixedTransformView
- source - Variable in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
- source - Variable in class net.imglib2.view.SubsampleView
- source - Variable in class net.imglib2.view.TransformBuilder
-
Provides the untransformed random access.
- source - Variable in class net.imglib2.view.TransformView
- sourceA - Variable in class net.imglib2.view.RandomAccessiblePair
- sourceAccess - Variable in class net.imglib2.view.composite.AbstractComposite
- sourceAccess - Variable in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
- sourceAccess - Variable in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
- sourceAccess - Variable in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
- sourceB - Variable in class net.imglib2.view.RandomAccessiblePair
- sourceInterval - Variable in class net.imglib2.AbstractWrappedRealInterval
- sourceRandomAccess - Variable in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- splitDimension - Variable in class net.imglib2.KDTreeNode
-
dimension along which this node divides the space.
- squareDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
- squareDistance(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
get the squared length of (a - b).
- squareDistance(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
-
Calculate the square Euclidean distance of a query location to the location stored in referenceLocation.
- squareDistance(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
-
Calculate the square Euclidean distance of a query location to the location stored in referenceLocation.
- squareDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
- squareLength(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
get the squared length of a.
- squDistanceTo(double[]) - Method in class net.imglib2.KDTreeNode
-
Compute the squared distance from p to this node.
- squDistanceTo(float[]) - Method in class net.imglib2.KDTreeNode
-
Compute the squared distance from p to this node.
- squDistanceTo(RealLocalizable) - Method in class net.imglib2.KDTreeNode
-
Compute the squared distance from p to this node.
- stack(List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
-
Form a (n+1)-dimensional
RandomAccessibleInterval
by stacking n-dimensionalRandomAccessibleInterval
s. - stack(RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
-
Form a (n+1)-dimensional
RandomAccessibleInterval
by stacking n-dimensionalRandomAccessibleInterval
s. - stack(StackView.StackAccessMode, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
-
Form a (n+1)-dimensional
RandomAccessibleInterval
by stacking n-dimensionalRandomAccessibleInterval
s. - stack(StackView.StackAccessMode, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
-
Form a (n+1)-dimensional
RandomAccessibleInterval
by stacking n-dimensionalRandomAccessibleInterval
s. - StackView<T> - Class in net.imglib2.view
-
A stack of n-dimensional
RandomAccessibleInterval
s, forming a (n+1)-dimensionalRandomAccessibleInterval
. - StackView(List<? extends RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.view.StackView
- StackView(List<? extends RandomAccessibleInterval<T>>, StackView.StackAccessMode) - Constructor for class net.imglib2.view.StackView
- StackView.DefaultRA<T> - Class in net.imglib2.view
-
A
RandomAccess
on aStackView
. - StackView.MoveAllSlicesRA<T> - Class in net.imglib2.view
-
A
RandomAccess
on aStackView
. - StackView.StackAccessMode - Enum in net.imglib2.view
-
Describes how a
RandomAccess
on the (n+1)-dimensionalStackView
maps position changes into position changes of the underlying n-dimensionalRandomAccess
es. - step - Variable in class net.imglib2.img.list.AbstractListImg
- step - Variable in class net.imglib2.img.list.AbstractLongListImg
- steps - Variable in class net.imglib2.img.cell.Cell
- steps - Variable in class net.imglib2.iterator.IntervalIterator
- steps - Variable in class net.imglib2.view.SubsampleView
- sub(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
- sub(BitType) - Method in class net.imglib2.type.logic.BitType
- sub(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
- sub(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- sub(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
-
Relies on
BigInteger.subtract(BigInteger)
. - sub(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- sub(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- sub(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- sub(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- sub(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- sub(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
- sub(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- sub(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- sub(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- sub(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- sub(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- sub(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- sub(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- sub(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
- sub(T) - Method in interface net.imglib2.type.operators.Sub
- sub(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- sub(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- Sub<T> - Interface in net.imglib2.type.operators
- SubIntervalIterable<T> - Interface in net.imglib2.view.iteration
- subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.array.ArrayImg
-
Returns the iteration order given the interval.
- subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.ImgView
- subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.planar.PlanarImg
-
Returns the iteration order given the interval.
- subIntervalIterationOrder(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
-
Returns the iteration order given the interval.
- subsample(RandomAccessible<T>, long) - Static method in class net.imglib2.view.Views
-
Sample only every stepth value of a source
RandomAccessible
. - subsample(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
-
Sample only every stepdth value of a source
RandomAccessible
. - subsample(RandomAccessibleInterval<T>, long) - Static method in class net.imglib2.view.Views
-
Sample only every stepth value of a source
RandomAccessibleInterval
. - subsample(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
-
Sample only every stepdth value of a source
RandomAccessibleInterval
. - SubsampleIntervalView<T> - Class in net.imglib2.view
-
SubsampleIntervalView
is a view that provides access to only every sdth value of a sourceRandomAccessibleInterval
. - SubsampleIntervalView(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.view.SubsampleIntervalView
- SubsampleIntervalView(RandomAccessibleInterval<T>, long...) - Constructor for class net.imglib2.view.SubsampleIntervalView
- SubsampleRandomAccess() - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- SubsampleRandomAccess(Interval) - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- SubsampleRandomAccess(RandomAccess<T>) - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- SubsampleView<T> - Class in net.imglib2.view
-
SubsampleView
is a view that provides access to only every sdth value of a sourceRandomAccessible
. - SubsampleView(RandomAccessible<T>, long) - Constructor for class net.imglib2.view.SubsampleView
- SubsampleView(RandomAccessible<T>, long...) - Constructor for class net.imglib2.view.SubsampleView
- SubsampleView.SubsampleRandomAccess - Class in net.imglib2.view
- subtract(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
-
set c = a - b.
- subtractData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
-
Uncounts some original data contained in a given iterable collection.
- subtractData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
-
Uncounts some original data contained in a given iterable collection.
- subtractData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
-
Uncounts some original data contained in a given iterable collection.
- sums - Variable in class net.imglib2.util.RealSum
- supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
- supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.ImgView
- supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
- supportsOptimizedCursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
- switchRealComplex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
T
- t - Variable in class net.imglib2.Volatile
- T - net.imglib2.type.label.BasePairBitType.Base
- target - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
- target - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
- target - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
- target - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
- target - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
- tmp - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
- tmp - Variable in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
- toARGBInt() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
-
Create and integer packed representation of this ARGB value.
- toLongArray() - Method in class net.imglib2.histogram.Histogram1d
-
Returns a bare long[] histogram with the same bin counts as this histogram.
- toString() - Method in class net.imglib2.AbstractCursor
- toString() - Method in class net.imglib2.AbstractCursorInt
- toString() - Method in class net.imglib2.img.AbstractImg
- toString() - Method in class net.imglib2.img.array.AbstractArrayCursor
- toString() - Method in class net.imglib2.img.cell.CellCursor
- toString() - Method in class net.imglib2.img.cell.CellGrid
- toString() - Method in class net.imglib2.img.planar.PlanarCursor
- toString() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
- toString() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
- toString() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
- toString() - Method in class net.imglib2.iterator.IntervalIterator
- toString() - Method in class net.imglib2.KDTree.SamplerNode
- toString() - Method in class net.imglib2.KDTree
- toString() - Method in class net.imglib2.KDTree.ValueNode
- toString() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
- toString() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
- toString() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
- toString() - Method in class net.imglib2.Point
- toString() - Method in class net.imglib2.position.transform.AbstractPositionableTransform
- toString() - Method in class net.imglib2.RealPoint
- toString() - Method in class net.imglib2.type.AbstractNativeType
- toString() - Method in class net.imglib2.type.label.BasePairBitType
- toString() - Method in class net.imglib2.type.label.BasePairCharType
- toString() - Method in class net.imglib2.type.logic.BitType
- toString() - Method in class net.imglib2.type.numeric.ARGBType
- toString() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
- toString() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
- toString() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
- toString() - Method in class net.imglib2.type.numeric.integer.GenericByteType
- toString() - Method in class net.imglib2.type.numeric.integer.GenericIntType
- toString() - Method in class net.imglib2.type.numeric.integer.GenericLongType
- toString() - Method in class net.imglib2.type.numeric.integer.GenericShortType
- toString() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
- toString() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
- toString() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
- toString() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
- toString() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- toString() - Method in class net.imglib2.type.numeric.real.AbstractRealType
- toString() - Method in class net.imglib2.view.MixedTransformView
- toString(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
- toString(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
- toString(double[][], String) - Static method in class net.imglib2.util.LinAlgHelpers
- toString(double[], String) - Static method in class net.imglib2.util.LinAlgHelpers
- toString(KDTreeNode<T>, String) - Method in class net.imglib2.KDTree
- totalCount() - Method in class net.imglib2.histogram.Histogram1d
-
Returns the total count of all values observed; both within and without the entire distribution.
- totalCount() - Method in class net.imglib2.histogram.HistogramNd
-
Returns the total count of all values observed; both within and without the entire distribution.
- totalValues() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
-
Returns the total number of values counted by this distribution.
- transform(BoundingBox) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
- transform(BoundingBox) - Method in interface net.imglib2.transform.integer.BoundingBoxTransform
-
Return a transformed bounding box.
- transform(BoundingBox) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
- transform(BoundingBox) - Method in class net.imglib2.transform.integer.shear.ShearTransform
- transform(T) - Method in interface net.imglib2.transform.Transformable
-
Generate a copy of the object in the transformed space.
- Transform - Interface in net.imglib2.transform
-
Transformation from Zn to Zm.
- Transformable<O,T extends Transform> - Interface in net.imglib2.transform
-
A class is transformable if it can produce a copy of itself in the transformed space using the supplied transform.
- TransformBuilder<T> - Class in net.imglib2.view
-
The "brain" of the Views framework.
- TransformBuilder(Interval, RandomAccessible<T>) - Constructor for class net.imglib2.view.TransformBuilder
-
Create a new TransformBuilder.
- TransformedRandomAccessible<T> - Interface in net.imglib2.view
-
A view of a RandomAccessible which is related by a coordinate
Transform
to its source. - TransformRandomAccess<T> - Class in net.imglib2.view
- TransformRandomAccess(TransformRandomAccess<T>) - Constructor for class net.imglib2.view.TransformRandomAccess
- transforms - Variable in class net.imglib2.view.TransformBuilder
-
List of transforms that have to be applied when wrapping the
TransformBuilder.source
RandomAccess to obtain a RandomAccess in the target coordinate system. - transformToSource - Variable in class net.imglib2.view.MixedTransformView
- transformToSource - Variable in class net.imglib2.view.TransformView
- TransformView<T> - Class in net.imglib2.view
- TransformView(RandomAccessible<T>, Transform) - Constructor for class net.imglib2.view.TransformView
- translate(Interval, long, int) - Static method in class net.imglib2.util.Intervals
-
Translate an interval in one dimension.
- translate(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
-
Translate the source view by the given translation vector.
- translate(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
-
Translate the source view by the given translation vector.
- translation - Variable in class net.imglib2.transform.integer.MixedTransform
-
translation is added to the target vector after applying permutation, projection, inversion operations.
- translation - Variable in class net.imglib2.transform.integer.SlicingTransform
-
translation is added to the target vector after applying the permutation and project-up operations.
- translation - Variable in class net.imglib2.transform.integer.TranslationTransform
-
target = source + translation.
- Translation - Interface in net.imglib2.transform.integer
-
TODO
- TranslationRandomAccess<T> - Class in net.imglib2.view
-
TODO
- TranslationRandomAccess(TranslationRandomAccess<T>) - Constructor for class net.imglib2.view.TranslationRandomAccess
- TranslationTransform - Class in net.imglib2.transform.integer
-
TODO
- TranslationTransform(int) - Constructor for class net.imglib2.transform.integer.TranslationTransform
- TranslationTransform(long[]) - Constructor for class net.imglib2.transform.integer.TranslationTransform
- TranslationTransform.InverseTranslationTransform - Class in net.imglib2.transform.integer
- tree - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
- tree - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
- tree - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
- type - Variable in class net.imglib2.img.array.AbstractArrayCursor
-
An instance of T
- type - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
-
An instance of T.
- type - Variable in class net.imglib2.img.array.ArrayRandomAccess
- type - Variable in class net.imglib2.img.cell.CellCursor
- type - Variable in class net.imglib2.img.cell.CellLocalizingCursor
- type - Variable in class net.imglib2.img.cell.CellRandomAccess
- type - Variable in class net.imglib2.img.planar.PlanarCursor
- type - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
- type - Variable in class net.imglib2.img.planar.PlanarRandomAccess
- Type<T extends Type<T>> - Interface in net.imglib2.type
-
The
Type
interface is responsible for accessing and manipulating (pixel) values. - TypeIdentity<T extends Type<T>> - Class in net.imglib2.converter
-
TODO
- TypeIdentity() - Constructor for class net.imglib2.converter.TypeIdentity
U
- U - net.imglib2.type.label.BasePairBitType.Base
- union(Interval, Interval) - Static method in class net.imglib2.util.Intervals
-
Compute the smallest interval that contains both input intervals.
- union(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
-
Compute the smallest interval that contains both input intervals.
- unshear(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
-
Negative shear transform of a RandomAccessible using
InverseShearTransform
, i.e. - unshear(RandomAccessible<T>, Interval, int, int) - Static method in class net.imglib2.view.Views
-
Negative shear transform of a RandomAccessible using
InverseShearTransform
, i.e. - Unsigned128BitType - Class in net.imglib2.type.numeric.integer
-
A
Type
with a bit depth of 128. - Unsigned128BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
- Unsigned128BitType(long, long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
- Unsigned128BitType(BigInteger) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
- Unsigned128BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
- Unsigned128BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
- Unsigned12BitType - Class in net.imglib2.type.numeric.integer
-
A 12-bit
Type
whose data is stored in aLongAccess
. - Unsigned12BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
- Unsigned12BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
- Unsigned12BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
- Unsigned12BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
- Unsigned2BitType - Class in net.imglib2.type.numeric.integer
-
A
Type
with a bit depth of 2. - Unsigned2BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
- Unsigned2BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
- Unsigned2BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
- Unsigned2BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
- Unsigned4BitType - Class in net.imglib2.type.numeric.integer
-
A
Type
with a bit depth of 4. - Unsigned4BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
- Unsigned4BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
- Unsigned4BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
- Unsigned4BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
- UnsignedByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt
-
A
AWTScreenImage
that is anArrayImg<UnsignedByteType, ByteArray>
. - UnsignedByteAWTScreenImage(ArrayImg<UnsignedByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
- UnsignedByteAWTScreenImage(UnsignedByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
- unsignedBytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- unsignedBytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- unsignedBytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- unsignedBytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- UnsignedByteType - Class in net.imglib2.type.numeric.integer
-
TODO
- UnsignedByteType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
- UnsignedByteType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
- UnsignedByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
- UnsignedByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
- UnsignedIntAWTScreenImage - Class in net.imglib2.display.screenimage.awt
-
A
AWTScreenImage
that is anArrayImg<ShortType, ShortArray>
. - UnsignedIntAWTScreenImage(ArrayImg<UnsignedIntType, IntArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
- UnsignedIntAWTScreenImage(UnsignedIntType, IntArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
- UnsignedIntDataBuffer - Class in net.imglib2.display.awt
-
DataBuffer that stores unsigned ints.
- UnsignedIntDataBuffer(int[][], int) - Constructor for class net.imglib2.display.awt.UnsignedIntDataBuffer
-
Construct a new buffer of unsigned ints using the given 2D int array.
- UnsignedIntDataBuffer(int[], int) - Constructor for class net.imglib2.display.awt.UnsignedIntDataBuffer
-
Construct a new buffer of unsigned ints using the given int array.
- unsignedInts(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- unsignedInts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- unsignedInts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- unsignedInts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- UnsignedIntType - Class in net.imglib2.type.numeric.integer
-
TODO
- UnsignedIntType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
- UnsignedIntType(long) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
- UnsignedIntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
- UnsignedIntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
- unsignedLongs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- unsignedLongs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- unsignedLongss(long[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- UnsignedLongType - Class in net.imglib2.type.numeric.integer
-
TODO
- UnsignedLongType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
- UnsignedLongType(long) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
- UnsignedLongType(BigInteger) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
- UnsignedLongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
- UnsignedLongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
- UnsignedShortAWTScreenImage - Class in net.imglib2.display.screenimage.awt
-
A
AWTScreenImage
that is anArrayImg<UnsignedShortType, ShortArray>
. - UnsignedShortAWTScreenImage(ArrayImg<UnsignedShortType, ShortArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
- UnsignedShortAWTScreenImage(UnsignedShortType, ShortArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
- unsignedShorts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
- unsignedShorts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
- unsignedShorts(short[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
- unsignedShorts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
- UnsignedShortType - Class in net.imglib2.type.numeric.integer
-
TODO
- UnsignedShortType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
- UnsignedShortType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
- UnsignedShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
- UnsignedShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
- UnsignedVariableBitLengthType - Class in net.imglib2.type.numeric.integer
-
A
Type
with arbitrary bit depth up to maximum 64 bits. - UnsignedVariableBitLengthType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- UnsignedVariableBitLengthType(long, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- UnsignedVariableBitLengthType(LongAccess, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- UnsignedVariableBitLengthType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
- update(Object) - Method in class net.imglib2.img.array.ArrayImg
- update(Object) - Method in class net.imglib2.img.cell.AbstractCellImg
- update(Object) - Method in interface net.imglib2.img.NativeImg
-
called by type with cursor.
- update(Object) - Method in class net.imglib2.img.planar.PlanarImg
- update(Object) - Method in class net.imglib2.img.sparse.NtreeImg
- updateContainer(Object) - Method in class net.imglib2.type.AbstractBitType
- updateContainer(Object) - Method in class net.imglib2.type.label.BasePairCharType
- updateContainer(Object) - Method in class net.imglib2.type.logic.BitType
- updateContainer(Object) - Method in interface net.imglib2.type.NativeType
-
This method is used by an accessor (e.g., a
Cursor
) to request an update of the current data array. - updateContainer(Object) - Method in class net.imglib2.type.numeric.ARGBType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.real.DoubleType
- updateContainer(Object) - Method in class net.imglib2.type.numeric.real.FloatType
- updateCurrentArrays() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
-
Walk through composite[] and store the currently active converters and positions (in dimension
CompositeXYProjector.dimIndex
) toCompositeXYProjector.currentConverters
andCompositeXYProjector.currentPositions
. - updateCurrentArrays() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
-
Walk through composite[] and store the currently active converters and positions (in dimension
CompositeXYRandomAccessibleProjector.dimIndex
) toCompositeXYRandomAccessibleProjector.currentConverters
andCompositeXYRandomAccessibleProjector.currentPositions
. - updateIndex(int) - Method in class net.imglib2.type.AbstractBitType
- updateIndex(int) - Method in class net.imglib2.type.AbstractNativeType
- updateIndex(int) - Method in class net.imglib2.type.logic.BitType
- updateIndex(int) - Method in interface net.imglib2.type.NativeType
-
Set the index into the current data array.
- updateIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- updateIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- updateIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- updateIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- updateIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- updateIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- updateIndex(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- updateIndex(int) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
- updateIndex(int) - Method in class net.imglib2.type.numeric.real.DoubleType
- updateIndex(int) - Method in class net.imglib2.type.numeric.real.FloatType
- upperTailCount() - Method in class net.imglib2.histogram.Histogram1d
-
Returns the frequency count of values in the upper tail bin (if any).
- upperTailCount() - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of values in all upper tail bins (if any).
- upperTailCount(int) - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of values in the upper tail bin (if any) for the given dimension.
- Util - Class in net.imglib2.util
-
TODO
- Util() - Constructor for class net.imglib2.util.Util
V
- valid - Variable in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
- valid - Variable in class net.imglib2.Volatile
- value - Variable in class net.imglib2.KDTree.ValueNode
- value - Variable in class net.imglib2.outofbounds.OutOfBoundsConstantValue
- value - Variable in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
- value - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
- valueCount() - Method in class net.imglib2.histogram.Histogram1d
-
Returns the frequency count of all values in the middle of the distribution.
- valueCount() - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of all values in the middle of the distribution.
- valueCount(int) - Method in class net.imglib2.histogram.HistogramNd
-
Returns the frequency count of all values in the middle of the distribution for a given dimension.
- valueEquals(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
- valueEquals(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
- valueEquals(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
- valueEquals(BitType) - Method in class net.imglib2.type.logic.BitType
- valueEquals(BoolType) - Method in class net.imglib2.type.logic.BoolType
- valueEquals(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
- valueEquals(ComplexDoubleType) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
- valueEquals(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
- valueEquals(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
- valueEquals(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
-
Default test at long precision.
- valueEquals(DoubleType) - Method in class net.imglib2.type.numeric.real.DoubleType
- valueEquals(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
- valueEquals(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
- valueEquals(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
-
Default test at long precision.
- valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
- valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
- valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
- valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
- valueEquals(T) - Method in interface net.imglib2.type.operators.ValueEquals
- valueEquals(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
- valueEquals(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
- ValueEquals<T> - Interface in net.imglib2.type.operators
-
Tests equivalency of values.
- ValueNode(KDTree.ValueNode<T>) - Constructor for class net.imglib2.KDTree.ValueNode
- ValueNode(T, RealLocalizable, int, KDTree.ValueNode<T>, KDTree.ValueNode<T>) - Constructor for class net.imglib2.KDTree.ValueNode
- valueOf(String) - Static method in enum net.imglib2.converter.ChannelARGBConverter.Channel
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum net.imglib2.type.label.BasePairBitType.Base
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum net.imglib2.view.StackView.StackAccessMode
-
Returns the enum constant of this type with the specified name.
- ValuePair<A,B> - Class in net.imglib2.util
-
TODO
- ValuePair(A, B) - Constructor for class net.imglib2.util.ValuePair
- values - Variable in class net.imglib2.display.AbstractArrayColorTable
-
Actual color table values.
- values() - Static method in enum net.imglib2.converter.ChannelARGBConverter.Channel
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum net.imglib2.type.label.BasePairBitType.Base
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum net.imglib2.view.StackView.StackAccessMode
-
Returns an array containing the constants of this enum type, in the order they are declared.
- valueToBin(int, double, double, double) - Static method in class net.imglib2.util.Binning
-
Convert value to bin number.
- verifyDimensions(int[]) - Static method in class net.imglib2.img.cell.CellImgFactory
-
Verify that
dimensions
is not null or empty, and that no dimension is less than 1. - verifyDimensions(long[]) - Static method in class net.imglib2.img.cell.CellImgFactory
-
Verify that
dimensions
is not null or empty, and that no dimension is less than 1. - verifyDimensions(List<L>, int) - Static method in class net.imglib2.KDTree
-
Check whether all positions in the positions list have dimension n.
- View - Interface in net.imglib2
-
An interface which marks an object that is a lightweight wrapper or "view" around actual data.
- Views - Class in net.imglib2.view
-
Create light-weight views into
RandomAccessibles
. - Views() - Constructor for class net.imglib2.view.Views
- visit(RandomAccessible<T>) - Method in class net.imglib2.view.TransformBuilder
-
Visit a RandomAccessible (while traversing the view hierarchy).
- visitExtended(ExtendedRandomAccessibleInterval<T, ?>) - Method in class net.imglib2.view.TransformBuilder
-
Visit a ExtendedRandomAccessibleInterval (while traversing the view hierarchy).
- visitTransformed(TransformedRandomAccessible<T>) - Method in class net.imglib2.view.TransformBuilder
-
Visit a TransformedRandomAccessible (while traversing the view hierarchy).
- Volatile<T> - Class in net.imglib2
-
Something volatile that has a value and is either VALID or INVALID.
- Volatile(T) - Constructor for class net.imglib2.Volatile
- Volatile(T, boolean) - Constructor for class net.imglib2.Volatile
- Volatile2DRandomAccessibleProjector<T,A extends Volatile<T>,B> - Class in net.imglib2.display.projector.volatiles
-
IterableIntervalProjector2D
forVolatile
input. - Volatile2DRandomAccessibleProjector(int, int, RandomAccessible<A>, RandomAccessibleInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
- VolatileAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
-
A basic type access that can contain valid or invalid data.
- VolatileArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.volatiles
-
An
ArrayDataAccess
that can contain valid or invalid data. - VolatileByteAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
- VolatileByteArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
ByteArray
with anAbstractVolatileByteArray.isValid()
flag. - VolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
- VolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
- VolatileCharAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
- VolatileCharArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
CharArray
with anAbstractVolatileCharArray.isValid()
flag. - VolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
- VolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
- VolatileDoubleAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
- VolatileDoubleArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
DoubleArray
with anAbstractVolatileDoubleArray.isValid()
flag. - VolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
- VolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
- VolatileFloatAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
- VolatileFloatArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
FloatArray
with anAbstractVolatileFloatArray.isValid()
flag. - VolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
- VolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
- VolatileIntAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
- VolatileIntArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
IntArray
with anAbstractVolatileIntArray.isValid()
flag. - VolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
- VolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
- VolatileLongAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
- VolatileLongArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
LongArray
with anAbstractVolatileLongArray.isValid()
flag. - VolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
- VolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
- VolatileNumericType<T extends NumericType<T>> - Class in net.imglib2.type.volatiles
-
Something volatile that has a value and is either VALID or INVALID.
- VolatileNumericType(T) - Constructor for class net.imglib2.type.volatiles.VolatileNumericType
- VolatileNumericType(T, boolean) - Constructor for class net.imglib2.type.volatiles.VolatileNumericType
- VolatileRealType<T extends RealType<T>> - Class in net.imglib2.type.volatiles
-
Something volatile that has a value and is either VALID or INVALID.
- VolatileRealType(T) - Constructor for class net.imglib2.type.volatiles.VolatileRealType
- VolatileRealType(T, boolean) - Constructor for class net.imglib2.type.volatiles.VolatileRealType
- VolatileRealTypeARGBConverter - Class in net.imglib2.converter
-
Converts a
VolatileRealType
to anARGBType
. - VolatileRealTypeARGBConverter() - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
- VolatileRealTypeARGBConverter(double, double) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
- VolatileRealTypeARGBConverter(double, double, ARGBType) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
- VolatileRealTypeARGBConverter(ARGBType) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
- VolatileShortAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
- VolatileShortArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
-
A
ShortArray
with anAbstractVolatileShortArray.isValid()
flag. - VolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
- VolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
W
- weights - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
-
Weights for each pixel of the 2x2x...x2 hypercube of pixels participating in the interpolation.
- width - Variable in class net.imglib2.img.planar.PlanarRandomAccess
- wrap(double[]) - Static method in class net.imglib2.RealPoint
-
Create a point that stores its coordinates in the provided position array.
- wrap(long[]) - Static method in class net.imglib2.FinalDimensions
-
Create a FinalDimensions object that stores its coordinates in the provided position array.
- wrap(long[]) - Static method in class net.imglib2.Point
-
Create a point that stores its coordinates in the provided position array.
- wrap(RandomAccessibleInterval<T>, ImgFactory<T>) - Static method in class net.imglib2.img.ImgView
-
Represent an arbitrary RandomAccessibleInterval as an Img
- wrapGenericTransform(RandomAccessible<T>, Transform) - Method in class net.imglib2.view.TransformBuilder
- wrapMixedTransform(RandomAccessible<T>, MixedTransform) - Method in class net.imglib2.view.TransformBuilder
- WrappedImg<T> - Interface in net.imglib2.img
-
An object that wraps an
Img
somehow. - wrapSlicingTransform(RandomAccessible<T>, SlicingTransform) - Method in class net.imglib2.view.TransformBuilder
- wrapTranslationTransform(RandomAccessible<T>, TranslationTransform) - Method in class net.imglib2.view.TransformBuilder
- WriteConvertedCursor<A,B> - Class in net.imglib2.converter.readwrite
-
TODO
- WriteConvertedCursor(Cursor<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedCursor
- WriteConvertedIterableInterval<A,B> - Class in net.imglib2.converter.readwrite
-
TODO
- WriteConvertedIterableInterval(IterableInterval<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
- WriteConvertedIterableRandomAccessibleInterval<A,B,S extends RandomAccessible<A> & IterableInterval<A>> - Class in net.imglib2.converter.readwrite
-
TODO
- WriteConvertedIterableRandomAccessibleInterval(S, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
- WriteConvertedRandomAccess<A,B> - Class in net.imglib2.converter.readwrite
-
TODO
- WriteConvertedRandomAccess(RandomAccess<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
- WriteConvertedRandomAccessible<A,B> - Class in net.imglib2.converter.readwrite
-
TODO
- WriteConvertedRandomAccessible(RandomAccessible<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
- WriteConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter.readwrite
-
TODO
- WriteConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
X
- X - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
- xor(boolean) - Method in class net.imglib2.type.logic.BoolType
- xor(BitType) - Method in class net.imglib2.type.logic.BitType
- xor(BoolType) - Method in class net.imglib2.type.logic.BoolType
- xor(T) - Method in interface net.imglib2.type.BooleanType
Y
- Y - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
Z
- zero - Variable in class net.imglib2.transform.integer.MixedTransform
-
for each component of the target vector (before translation).
- zero - Variable in class net.imglib2.transform.integer.SlicingTransform
-
for each component of the target vector (before translation).
- zeroMin(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
-
Translate the source such that the upper left corner is at the origin
- ZeroMinIntervalIterator - Class in net.imglib2.iterator
-
Use this class to iterate a virtual rectangular
Interval
whose min coordinates are at 0n in flat order, that is: row by row, plane by plane, cube by cube, ... - ZeroMinIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.ZeroMinIntervalIterator
- ZeroMinIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.ZeroMinIntervalIterator
- zeroMinN(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.composite.CompositeIntervalView
- zeroMinPos - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
-
Position relative to min, for internal calculations.
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