Uses of Class
pal.tree.SplitSystem
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Packages that use SplitSystem Package Description pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
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Uses of SplitSystem in pal.tree
Methods in pal.tree that return SplitSystem Modifier and Type Method Description static SplitSystem
SplitUtils. getSplits(IdGroup idGroup, Tree tree)
creates a split system from a tree (using a pre-specified order of sequences)static SplitSystem
SplitUtils. getSplits(Tree tree)
creates a split system from a tree (using tree-induced order of sequences)Methods in pal.tree with parameters of type SplitSystem Modifier and Type Method Description static double
TreeUtils. getRobinsonFouldsDistance(SplitSystem s1, Tree t2)
computes Robinson-Foulds (1981) distance between two treesstatic double
TreeUtils. getRobinsonFouldsRescaledDistance(SplitSystem s1, Tree t2)
computes Robinson-Foulds (1981) distance between two trees rescaled to a number between 0 and 1
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