Uses of Class
pal.tree.SimpleTree
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Packages that use SimpleTree Package Description pal.supgma pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
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Uses of SimpleTree in pal.supgma
Subclasses of SimpleTree in pal.supgma Modifier and Type Class Description class
SUPGMATree
constructs an SUPGMA tree from pairwise distances. -
Uses of SimpleTree in pal.tree
Subclasses of SimpleTree in pal.tree Modifier and Type Class Description class
ClusterTree
class
NeighborJoiningTree
constructs a neighbor-joining tree from pairwise distances
Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees.class
ReadTree
constructs a tree reading in a New Hampshire treefile, taking care for internal labels and branch lengths and binary/nonbinary and rooted/unrooted treesclass
UPGMATree
Deprecated.Use ClusterTree
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