Class SerialCoalescentSimulator

  • All Implemented Interfaces:
    java.io.Serializable

    public class SerialCoalescentSimulator
    extends java.lang.Object
    implements java.io.Serializable
    Simulates a set of coalescent intervals given a demographic model.
    Version:
    $Id: SerialCoalescentSimulator.java,v 1.3 2002/10/03 06:06:55 matt Exp $
    Author:
    Alexei Drummond
    See Also:
    Serialized Form
    • Constructor Detail

      • SerialCoalescentSimulator

        public SerialCoalescentSimulator()
    • Method Detail

      • simulateIntervals

        public CoalescentIntervals simulateIntervals​(TimeOrderCharacterData tocd,
                                                     DemographicModel model,
                                                     boolean createTree)
        Simulates a set of CoalescentIntervals from a genealogy.
        Parameters:
        tocd - the time order character data determining the order and time in which samples are added.
        model - the demographic model to use
      • getTree

        public Tree getTree()