Uses of Interface
pal.distance.DistanceMatrixAccess
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Packages that use DistanceMatrixAccess Package Description pal.distance Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances).pal.supgma -
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Uses of DistanceMatrixAccess in pal.distance
Methods in pal.distance that return DistanceMatrixAccess Modifier and Type Method Description static DistanceMatrixAccess
DistanceMatrixAccess.Utils. createEvolutionary(Alignment a, SubstitutionModel sm)
static DistanceMatrixAccess
DistanceMatrixAccess.Utils. createSimple(DistanceMatrix base)
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Uses of DistanceMatrixAccess in pal.supgma
Methods in pal.supgma with parameters of type DistanceMatrixAccess Modifier and Type Method Description SUPGMABase.PopulationParameters
SUPGMABase. process(DistanceMatrixAccess alternativeSource, AlgorithmCallback callback, LMSSolver solver)
Constructors in pal.supgma with parameters of type DistanceMatrixAccess Constructor Description SUPGMABase(DistanceMatrixAccess distanceAccess, DistanceMatrixGenerator replicateGenerator, TimeOrderCharacterData tocd)
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