Uses of Class
pal.misc.LabelMapping
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Packages that use LabelMapping Package Description pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating.pal.gui GUI components for some special objects (e.g., trees).pal.misc Classes that don't fit elsewhere ;^)pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
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Uses of LabelMapping in pal.alignment
Constructors in pal.alignment with parameters of type LabelMapping Constructor Description SimpleAlignment(Alignment a, LabelMapping lm)
Clone constructor. -
Uses of LabelMapping in pal.gui
Methods in pal.gui with parameters of type LabelMapping Modifier and Type Method Description void
TreeComponent. setLabelMapping(LabelMapping lm)
void
TreePainter. setLabelMapping(LabelMapping lp)
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Uses of LabelMapping in pal.misc
Methods in pal.misc that return LabelMapping Modifier and Type Method Description LabelMapping
LabelMapping. getRelabeled(LabelMapping.Relabeller relabeller)
LabelMapping
LabelMapping. getUniquifiedMappings()
If a mapping occurs more than once will rename instance to "x 1", "x 2"... -
Uses of LabelMapping in pal.tree
Methods in pal.tree with parameters of type LabelMapping Modifier and Type Method Description protected void
SimpleNode. init(Node n, boolean keepId, LabelMapping lm)
Initialized node instance variables based on given Node.Constructors in pal.tree with parameters of type LabelMapping Constructor Description SimpleNode(Node n, LabelMapping lm)
SimpleTree(Tree tree, LabelMapping lm)
clone constructor
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