Uses of Class
pal.substmodel.NucleotideModel
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Packages that use NucleotideModel Package Description pal.substmodel Classes describing substitution models, i.e. -
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Uses of NucleotideModel in pal.substmodel
Subclasses of NucleotideModel in pal.substmodel Modifier and Type Class Description class
F81
Felsenstein 1981 model of nucleotide evolutionclass
F84
Felsenstein 1984 (PHYLIP) model of nucleotide evolutionclass
GTR
GTR (general time reversible) model of nucleotide evolution Lanave, C., G.class
HKY
Hasegawa-Kishino-Yano model of nucleotide evolution Hasegawa, M., H.class
TN
Tamura-Nei model of nucleotide evolution Tamura, K.Methods in pal.substmodel that return NucleotideModel Modifier and Type Method Description static NucleotideModel
NucleotideModel. getInstance(int modelID, double[] params, double[] freq)
Create nucleotide substitution model according to model type
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