Package pal.alignment

Class Genotype


  • public class Genotype
    extends java.lang.Object
    This class provides from genotype to be constructed from separate but paired alignments. This is just a very basic implementation. Other suggested approaches would be welcome.
    Version:
    $Id:
    Author:
    Ed Buckler
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      Alignment getAlignment​(int i)  
      char getData​(int seq, int site, int allele)
      sequence alignment at (sequence, site, allele)
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Method Detail

      • getAlignment

        public Alignment getAlignment​(int i)
      • getData

        public char getData​(int seq,
                            int site,
                            int allele)
        sequence alignment at (sequence, site, allele)