Uses of Class
pal.alignment.AlignmentParseException
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Packages that use AlignmentParseException Package Description pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. -
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Uses of AlignmentParseException in pal.alignment
Methods in pal.alignment that throw AlignmentParseException Modifier and Type Method Description static Alignment[]
AlignmentReaders. readAllPhylipClustalAlignments(java.io.Reader r, DataType dt)
Read an alignment in phylip/clustal/simple format.static Alignment
AlignmentReaders. readPhylipClustalAlignment(java.io.Reader r, DataType dt)
Read an alignment in phylip/clustal/simple format.static void
AlignmentReaders. readPhylipClustalAlignment(java.io.Reader r, DataType dt, AlignmentReceiver receiver)
Read an alignment in phylip/clustal/simple format.Constructors in pal.alignment that throw AlignmentParseException Constructor Description ReadAlignment(java.io.PushbackReader input)
read from streamReadAlignment(java.lang.String file)
read from fileReadAlignmentOld(java.io.PushbackReader input)
read from streamReadAlignmentOld(java.lang.String file)
read from file
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