Class Hierarchy
- java.lang.Object
- pal.eval.ChiSquareValue (implements pal.math.MultivariateFunction)
- pal.eval.ConditionalProbabilityStore (implements java.io.Serializable)
- pal.eval.DemographicValue (implements pal.math.MultivariateFunction)
- pal.eval.FastFourStateLHCalculator (implements pal.eval.LHCalculator)
- pal.eval.FastLikelihoodCalculator (implements pal.eval.LikelihoodCalculator, pal.misc.PalObjectListener)
- pal.eval.GeneralLikelihoodCalculator (implements pal.eval.LikelihoodCalculator, pal.misc.PalObjectListener)
- pal.eval.LHCalculator.AbstractExternal
- pal.eval.LikelihoodOptimiser
- pal.eval.LikelihoodSummary (implements java.io.Serializable)
- pal.eval.LikelihoodTool
- pal.eval.LikelihoodValue
- pal.eval.DemographicLikelihoodValue
- pal.eval.ModelParameters (implements pal.math.MultivariateFunction)
- pal.eval.PatternInfo
- pal.eval.SimpleLeafCalculator (implements pal.eval.LHCalculator.Leaf)
- pal.eval.SimpleLHCalculator (implements pal.eval.LHCalculator)
- pal.eval.SimpleLikelihoodCalculator (implements pal.eval.LikelihoodCalculator)
- pal.eval.SimpleModelFastFourStateLHCalculator (implements pal.eval.LHCalculator)
- pal.eval.SimpleMolecularClockLikelihoodModel (implements pal.eval.MolecularClockLikelihoodModel)
- pal.eval.SimpleUnconstrainedLikelihoodModel (implements pal.eval.UnconstrainedLikelihoodModel)
- pal.eval.SimpleUnconstrainedLikelihoodModel.InternalImpl (implements pal.eval.UnconstrainedLikelihoodModel.Internal)
- pal.eval.SimpleUnconstrainedLikelihoodModel.LeafImpl (implements pal.eval.UnconstrainedLikelihoodModel.Leaf)
- pal.eval.SingleSplitMolecularClockLikelihoodModel (implements pal.eval.MolecularClockLikelihoodModel)
- pal.eval.SiteDetails.Utils
Interface Hierarchy
- pal.eval.ConditionalProbabilityStore.ExtraProcessor
- pal.eval.LHCalculator
- pal.eval.LHCalculator.Internal
- pal.eval.LHCalculator.Leaf
- pal.eval.LikelihoodCalculator
- pal.eval.MolecularClockLikelihoodModel
- pal.eval.MolecularClockLikelihoodModel.External
- pal.eval.MolecularClockLikelihoodModel.HeightConverter
- pal.eval.MolecularClockLikelihoodModel.Internal
- pal.eval.MolecularClockLikelihoodModel.Leaf
- pal.eval.MolecularClockLikelihoodModel.Simulator
- java.io.Serializable
- pal.eval.LHCalculator.External
- pal.eval.LHCalculator.Factory
- pal.eval.LHCalculator.Generator
- pal.eval.MolecularClockLikelihoodModel.Instance
- pal.eval.UnconstrainedLikelihoodModel.External
- pal.eval.UnconstrainedLikelihoodModel.Instance
- pal.eval.SiteDetails
- pal.eval.UnconstrainedLikelihoodModel
- pal.eval.UnconstrainedLikelihoodModel.Internal
- pal.eval.UnconstrainedLikelihoodModel.Leaf