Package pal.datatype

Interface TransitionPenaltyTable

  • All Known Implementing Classes:
    IUPACPenaltyTable

    public interface TransitionPenaltyTable
    Implements a table of transition penalties for a particular datatype. Used for alignment scoring.
    Version:
    $Id: TransitionPenaltyTable.java,v 1.2 2001/07/13 14:39:13 korbinian Exp $
    Author:
    Alexei Drummond
    • Method Detail

      • penalty

        double penalty​(int a,
                       int b)