Package pal.supgma
Interface RateHandler
-
public interface RateHandler
-
-
Nested Class Summary
Nested Classes Modifier and Type Interface Description static class
RateHandler.Utils
-
Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description void
adjustDistances(double[][] matrix, TimeOrderCharacterData tocd)
void
fillInLSInfo(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes)
MutationRateModel.Factory
generateRateModelFactory(double[] deltas, TimeOrderCharacterData tocd)
java.lang.String
getInfo()
int
getNumberOfParameters(TimeOrderCharacterData tocd)
boolean
isCICompatible()
-
-
-
Method Detail
-
getNumberOfParameters
int getNumberOfParameters(TimeOrderCharacterData tocd)
-
adjustDistances
void adjustDistances(double[][] matrix, TimeOrderCharacterData tocd)
-
isCICompatible
boolean isCICompatible()
-
getInfo
java.lang.String getInfo()
-
fillInLSInfo
void fillInLSInfo(double[] mRow, int startingIndex, int minSample, int maxSample, double[] sampleTimes)
-
generateRateModelFactory
MutationRateModel.Factory generateRateModelFactory(double[] deltas, TimeOrderCharacterData tocd)
-
-