static Alignment |
ElementParser.parseAlignmentElement(org.w3c.dom.Element e) |
Parses an alignment element and returns an alignment object.
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static Attribute |
ElementParser.parseAttributeElement(org.w3c.dom.Element e) |
parses an attribute element.
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static DemographicModel |
ElementParser.parseDemographicModel(org.w3c.dom.Element e) |
Parses an element from an DOM document into a DemographicModel.
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static Node |
ElementParser.parseEdgeNodeElement(org.w3c.dom.Element e) |
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static double[] |
ElementParser.parseFrequencies(org.w3c.dom.Element element) |
reads XML format of frequencies.
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static MutationRateModel |
ElementParser.parseMutationRateModel(org.w3c.dom.Element e) |
Reads a mutation rate model from a DOM Document element.
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static Node |
ElementParser.parseNodeElement(org.w3c.dom.Element e) |
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static RateDistribution |
ElementParser.parseRateDistribution(org.w3c.dom.Element e) |
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static RateMatrix |
ElementParser.parseRateMatrix(org.w3c.dom.Element e) |
Reads a rate matrix from a DOM Document element.
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protected static RateMatrix |
ElementParser.parseRateMatrix(org.w3c.dom.Element e,
Alignment a) |
Reads a rate matrix from a DOM Document element.
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static TimeOrderCharacterData |
ElementParser.parseTimeDataElement(org.w3c.dom.Element e) |
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static Tree |
ElementParser.parseTreeElement(org.w3c.dom.Element e) |
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static void |
ElementParser.validateTagName(org.w3c.dom.Element e,
java.lang.String name) |
Throws a runtime exception if the element does not have
the given name.
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