Uses of Interface
pal.alignment.AlignmentGenerator
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Packages that use AlignmentGenerator Package Description pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating.pal.statistics Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.) -
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Uses of AlignmentGenerator in pal.alignment
Methods in pal.alignment that return AlignmentGenerator Modifier and Type Method Description static AlignmentGenerator
AlignmentGenerator.Utils. createBootstrapGenerator(Alignment baseAlignment)
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Uses of AlignmentGenerator in pal.statistics
Constructors in pal.statistics with parameters of type AlignmentGenerator Constructor Description GeneralTopologyPool(Tree[] topologies, LikelihoodEvaluator baseCalculator, ReplicateLikelihoodEvaluator replicateCalculator, Alignment baseAlignment, AlignmentGenerator replicateGenerator)
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