Uses of Class
pal.alignment.SimpleAlignment
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Packages that use SimpleAlignment Package Description pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating. -
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Uses of SimpleAlignment in pal.alignment
Subclasses of SimpleAlignment in pal.alignment Modifier and Type Class Description class
MultiLocusAnnotatedAlignment
MultiLocusAnnotatedAlignment is an extension of the SimpleAlignment that includes Annotation, and is designed for multiple loci.class
SimpleAnnotatedAlignment
This is the basic implementation of the Annotation interface, which is designed to provide annotation for an alignment.
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