Package pal.treesearch
Class SearcherUtils
- java.lang.Object
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- pal.treesearch.SearcherUtils
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public class SearcherUtils extends java.lang.Object
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Constructor Summary
Constructors Constructor Description SearcherUtils()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static int
createMatchups(int numberOfSites, int numberOfStates, int[] sitePatternMatchup, int[] patternStateMatchup, int[] sequence)
Fill in matchup arraysstatic java.lang.String[][]
split(java.lang.String[] leafNames, MersenneTwisterFast r)
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Method Detail
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createMatchups
public static final int createMatchups(int numberOfSites, int numberOfStates, int[] sitePatternMatchup, int[] patternStateMatchup, int[] sequence)
Fill in matchup arrays- Parameters:
numberOfSites
- The number of sitesnumberOfStates
- The number of statessitePatternMatchup
- Should be of length numberOfSitespatternStateMatchup
- Should be of length numberOfStates+1sequence
- the sequence- Returns:
- the number of patterns
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split
public static final java.lang.String[][] split(java.lang.String[] leafNames, MersenneTwisterFast r)
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