Uses of Interface
pal.eval.LikelihoodCalculator
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Packages that use LikelihoodCalculator Package Description pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters. -
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Uses of LikelihoodCalculator in pal.eval
Classes in pal.eval that implement LikelihoodCalculator Modifier and Type Class Description class
FastLikelihoodCalculator
Title: Fast Likelihood Calculator
Description: A fast likelihood calculator
Original code by Matthew Goode.class
GeneralLikelihoodCalculator
Title: General Likelihood Calculator
Description: A General likelihood calculator
This calculates the likelihood of an topologically invariant tree (on an unchanging alignment) quickly by remembering partial likelihoods of invariant subtrees, and by essentially generating site patterns for each sub tree.class
SimpleLikelihoodCalculator
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