Uses of Package
pal.distance
-
Packages that use pal.distance Package Description pal.distance Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances).pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.pal.supgma pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
Classes in pal.distance used by pal.distance Class Description DistanceMatrix storage for pairwise distance matrices.DistanceMatrixAccess DistanceMatrixGenerator DistanceParseException exception thrown by ReadDistanceMatrix -
Classes in pal.distance used by pal.eval Class Description DistanceMatrix storage for pairwise distance matrices. -
Classes in pal.distance used by pal.supgma Class Description DistanceMatrix storage for pairwise distance matrices.DistanceMatrixAccess DistanceMatrixGenerator -
Classes in pal.distance used by pal.tree Class Description DistanceMatrix storage for pairwise distance matrices.DistanceMatrixGenerator