Uses of Interface
pal.tree.TreeGenerator
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Packages that use TreeGenerator Package Description pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
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Uses of TreeGenerator in pal.tree
Subinterfaces of TreeGenerator in pal.tree Modifier and Type Interface Description interface
TreeIterator
Methods in pal.tree that return TreeGenerator Modifier and Type Method Description static TreeGenerator
TreeGenerator.Utils. createNeighbourJoiningGenerator(DistanceMatrixGenerator dataGenerator, java.lang.String[] outgroupNames)
Methods in pal.tree with parameters of type TreeGenerator Modifier and Type Method Description static Tree
TreeUtils. getReplicateCladeSupport(java.lang.String attributeName, Tree baseTree, TreeGenerator treeGenerator, int numberOfReplicates, AlgorithmCallback callback)
Generates a tree which is identical to baseTree but has attributes (defined by attributeName) at all internal nodes excluding the root node signifying (as a value between 0 and 100) the replicate support by clade (that is the proportion of replicates that produce the sub clade under that node)
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