Package pal.mep
Class DeltaModel.Utils
- java.lang.Object
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- pal.mep.DeltaModel.Utils
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- Enclosing interface:
- DeltaModel
public static final class DeltaModel.Utils extends java.lang.Object
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Constructor Summary
Constructors Constructor Description Utils()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static DeltaModel
getDisjointBased(DeltaModel primaryModel, DeltaModel subgroupModel, TimeOrderCharacterData subgroupTOCD)
static DeltaModel
getMutationRateModelBased(MutationRateModel.Factory mepFactory)
For interfacing with time based mutation rate modelsstatic DeltaModel
getUntimedBased()
For serial sampled analysis when no time information is available.static DeltaModel
getUntimedBased(double[] initalDeltas)
For serial sampled analysis when no time information is available.
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Method Detail
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getMutationRateModelBased
public static final DeltaModel getMutationRateModelBased(MutationRateModel.Factory mepFactory)
For interfacing with time based mutation rate models
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getUntimedBased
public static final DeltaModel getUntimedBased()
For serial sampled analysis when no time information is available.
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getUntimedBased
public static final DeltaModel getUntimedBased(double[] initalDeltas)
For serial sampled analysis when no time information is available.- Parameters:
initialDeltas
- , if not of required length (for given tocd) uses subset (or sets remainder to zero)
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getDisjointBased
public static final DeltaModel getDisjointBased(DeltaModel primaryModel, DeltaModel subgroupModel, TimeOrderCharacterData subgroupTOCD)
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