Package pal.supgma
Class SUPGMADistanceMatrix
- java.lang.Object
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- pal.distance.DistanceMatrix
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- pal.supgma.SUPGMADistanceMatrix
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- All Implemented Interfaces:
java.io.Serializable
,IdGroup
public class SUPGMADistanceMatrix extends DistanceMatrix
Corrects distances in a distance matrix such that all tips appear contemporaneous, given a time/date and rate information for the taxa.- Version:
- $Id: SUPGMADistanceMatrix.java,v 1.1 2003/10/19 02:35:26 matt Exp $
- Author:
- Alexei Drummond, Matthew Goode
- See Also:
- Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
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Constructor Summary
Constructors Constructor Description SUPGMADistanceMatrix(DistanceMatrix raw, TimeOrderCharacterData tocd, DeltaModel deltaModel)
Uses date/time information and a constant rate to correct distance matrices.
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Method Summary
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Methods inherited from class pal.distance.DistanceMatrix
absoluteDistance, addDistance, getClonedDistances, getClosestIndex, getClosestIndex, getDistance, getDistances, getIdCount, getIdentifier, getIdGroup, getSize, isSymmetric, meanDistance, printPHYLIP, setDistance, setDistances, setIdentifier, setIdGroup, squaredDistance, toString, whichIdNumber
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Constructor Detail
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SUPGMADistanceMatrix
public SUPGMADistanceMatrix(DistanceMatrix raw, TimeOrderCharacterData tocd, DeltaModel deltaModel)
Uses date/time information and a constant rate to correct distance matrices.
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