Package pal.misc
Class ParameterizedDoubleBundle
- java.lang.Object
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- pal.misc.ParameterizedDoubleBundle
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- All Implemented Interfaces:
NeoParameterized
public class ParameterizedDoubleBundle extends java.lang.Object implements NeoParameterized
Title: ParameterizedDoubleBundle
Description: A parameterized double bundle is simple a parameterized collection of mutable double objects. The idea is, all the changable attributes of the phylogenetic entities that are being accessed (eg the branch lengths of a tree, and the parameters of a model) can be grouped together externally (the point of this approach will become more apparent over time as PAL evolves)
- Version:
- 1.0
- Author:
- Matthew Goode
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Constructor Summary
Constructors Constructor Description ParameterizedDoubleBundle(MutableDouble[] parameters)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
getDefaultValues(double[] store, int startIndex)
get default value parameter valuesdouble
getLowerLimit(int n)
get lower parameter limitint
getNumberOfParameters()
get number of parametersvoid
getParameters(double[] parameterStore, int startIndex)
get model parameterdouble
getUpperLimit(int n)
get upper parameter limitvoid
setParameters(double[] parameters, int startIndex)
set model parameterjava.lang.String
toString()
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Constructor Detail
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ParameterizedDoubleBundle
public ParameterizedDoubleBundle(MutableDouble[] parameters)
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Method Detail
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getNumberOfParameters
public int getNumberOfParameters()
Description copied from interface:NeoParameterized
get number of parameters- Specified by:
getNumberOfParameters
in interfaceNeoParameterized
- Returns:
- number of parameters
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setParameters
public void setParameters(double[] parameters, int startIndex)
Description copied from interface:NeoParameterized
set model parameter- Specified by:
setParameters
in interfaceNeoParameterized
- Parameters:
parameters
- the array holding the parametersstartIndex
- the index into the array that the related parameters start at
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getParameters
public void getParameters(double[] parameterStore, int startIndex)
Description copied from interface:NeoParameterized
get model parameter- Specified by:
getParameters
in interfaceNeoParameterized
startIndex
- the index into the array that the related parameters start at
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getLowerLimit
public double getLowerLimit(int n)
Description copied from interface:NeoParameterized
get lower parameter limit- Specified by:
getLowerLimit
in interfaceNeoParameterized
- Parameters:
n
- parameter number- Returns:
- lower bound
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getUpperLimit
public double getUpperLimit(int n)
Description copied from interface:NeoParameterized
get upper parameter limit- Specified by:
getUpperLimit
in interfaceNeoParameterized
- Parameters:
n
- parameter number- Returns:
- upper bound
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getDefaultValues
public void getDefaultValues(double[] store, int startIndex)
Description copied from interface:NeoParameterized
get default value parameter values- Specified by:
getDefaultValues
in interfaceNeoParameterized
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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