Class RateMatrixUtils


  • public class RateMatrixUtils
    extends java.lang.Object
    Version:
    $Id: RateMatrixUtils.java,v 1.2 2001/07/13 14:39:13 korbinian Exp $
    Author:
    Korbinian Strimmer, Alexei Drummond, Matthew Goode
    • Constructor Summary

      Constructors 
      Constructor Description
      RateMatrixUtils()  
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static RateMatrix[] getCopy​(RateMatrix[] toCopy)  
      static RateMatrix getInstance​(int typeID, int modelID, double[] params, double[] freq)
      Create rate matrix given model and data type codes
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • RateMatrixUtils

        public RateMatrixUtils()
    • Method Detail

      • getInstance

        public static RateMatrix getInstance​(int typeID,
                                             int modelID,
                                             double[] params,
                                             double[] freq)
        Create rate matrix given model and data type codes
        Parameters:
        typeID - code for data type
        modelID - code for model of substitution
        params - model parameters
        freq - model frequencies
        Returns:
        rate matrix