Uses of Interface
pal.treesearch.ConstraintModel
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Packages that use ConstraintModel Package Description pal.mep Classes for the analysis of "measurably evolving populations" (mep).pal.treesearch -
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Uses of ConstraintModel in pal.mep
Methods in pal.mep that return ConstraintModel Modifier and Type Method Description ConstraintModel
DeltaModel. buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
ConstraintModel
MutationRateModel.Factory. buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
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Uses of ConstraintModel in pal.treesearch
Classes in pal.treesearch that implement ConstraintModel Modifier and Type Class Description class
FixedBSRDTGlobalClockModel
class
FixedSRDTGlobalClockModel
class
GlobalClockModel
class
MRDTGlobalClockModel
class
SRDTGlobalClockModel
class
UnconstrainedModel
Methods in pal.treesearch with parameters of type ConstraintModel Modifier and Type Method Description GeneralConstraintGroupManager
GeneralConstraintGroupManager.Store. getConstraintGroupManager(java.lang.String[] leafLabelSet, ConstraintModel constraints)
Constructors in pal.treesearch with parameters of type ConstraintModel Constructor Description GeneralConstructionTool(ConstraintModel constraints, Alignment alignment)
The constructorGeneralLikelihoodSearcher(Node baseTopology, Alignment baseAlignment, ConstraintModel constraintModel)
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