Uses of Package
pal.util
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Packages that use pal.util Package Description pal.algorithmics pal.alignment Classes dealing with sequence alignments, including methods for reading and printing in several possible formats, as well as rearranging and concatenating.pal.coalescent Classes to model population genetic processes using the coalescent.pal.distance Classes for reading and generating distance matrices, including computation of pairwise distances for sequence data (maximum-likelihood and observed distances).pal.misc Classes that don't fit elsewhere ;^)pal.statistics Classes with useful for statistics (normal distribution, Gamma distribution, chi-square distribution, exponential distribution, likelihood-ratio test, chi-square test, descriptive statistics, bootstrap estimators etc.)pal.substmodel Classes describing substitution models, i.e.pal.supgma pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint).pal.treesearch pal.util Utility classes for sorting etc.pal.xml Utility classes for converting PAL objects to and from XML documents. -
Classes in pal.util used by pal.algorithmics Class Description AlgorithmCallback -
Classes in pal.util used by pal.alignment Class Description AlgorithmCallback -
Classes in pal.util used by pal.coalescent Class Description AlgorithmCallback -
Classes in pal.util used by pal.distance Class Description AlgorithmCallback -
Classes in pal.util used by pal.misc Class Description Comparable interface for an object that is comparable. -
Classes in pal.util used by pal.statistics Class Description AlgorithmCallback -
Classes in pal.util used by pal.substmodel Class Description DoubleKeyCache XMLConstants constants (strings and numbers) relating to reading and writing XML. -
Classes in pal.util used by pal.supgma Class Description AlgorithmCallback -
Classes in pal.util used by pal.tree Class Description AlgorithmCallback -
Classes in pal.util used by pal.treesearch Class Description AlgorithmCallback -
Classes in pal.util used by pal.util Class Description AlgorithmCallback Comparable interface for an object that is comparable.Comparator interface for an object that can compare other objects for the purposes of ordering them.DoubleKey DoubleKeyCache Logger Interface for all objects that provide a logging facility. -
Classes in pal.util used by pal.xml Class Description XMLConstants constants (strings and numbers) relating to reading and writing XML.