Uses of Class
pal.tree.CladeSystem
-
Packages that use CladeSystem Package Description pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
-
Uses of CladeSystem in pal.tree
Methods in pal.tree that return CladeSystem Modifier and Type Method Description static CladeSystem
CladeSystem. getClades(IdGroup idGroup, Tree tree)
creates a clade system from a tree (using a pre-specified order of sequences)static CladeSystem
CladeSystem. getClades(Tree tree)
creates a clade system from a tree (using tree-induced order of sequences)static CladeSystem[]
CladeSystem. getCladeSystems(Tree[] trees)
Methods in pal.tree with parameters of type CladeSystem Modifier and Type Method Description static void
CladeSystem. calculateCladeProbabilities(Tree tree, CladeSystem[] cladeSystems)
-