Uses of Class
pal.substmodel.AminoAcidModel
-
Packages that use AminoAcidModel Package Description pal.substmodel Classes describing substitution models, i.e. -
-
Uses of AminoAcidModel in pal.substmodel
Subclasses of AminoAcidModel in pal.substmodel Modifier and Type Class Description class
BLOSUM62
BLOSUM62 model of amino acid evolutionclass
CPREV
CPREV model of amino acid evolution (J.Adachi et al.class
Dayhoff
Dayhoff model for amino acid evolution Dayhoff, M.O., Schwartz, R.M., Orcutt, B.C.class
JTT
JTT model of amino acid evolution Jones, D.class
MTREV24
MTREV24 model of amino acid evolutionclass
VT
VT (variable time matrix) model of amino acid evolution Modeling Amino Acid Replacement Mueller, T.class
WAG
WAG model of amino acid evolution (S.Methods in pal.substmodel that return AminoAcidModel Modifier and Type Method Description static AminoAcidModel
AminoAcidModel. getInstance(int modelID, double[] freq)
Create amino acid model according to model type
-