Uses of Interface
pal.tree.TreeOperation
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Packages that use TreeOperation Package Description pal.coalescent Classes to model population genetic processes using the coalescent.pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
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Uses of TreeOperation in pal.coalescent
Constructors in pal.coalescent with parameters of type TreeOperation Constructor Description SerialCoalescentGenerator(TimeOrderCharacterData tocd, DemographicModel demographicModel, int numberOfTreesToGenerate, TreeOperation treeFinisher)
Results will not contain alignmentsSerialCoalescentGenerator(TimeOrderCharacterData tocd, DemographicModel demographicModel, int numberOfTreesToGenerate, TreeOperation treeFinisher, SimulatedAlignment.Factory alignmentFactory)
SerialCoalescentGenerator(TimeOrderCharacterData tocd, DemographicModel demographicModel, TreeOperation treeFinisher, SimulatedAlignment.Factory alignmentFactory)
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Uses of TreeOperation in pal.tree
Methods in pal.tree that return TreeOperation Modifier and Type Method Description static TreeOperation
TreeOperation.Utils. createPipeline(TreeOperation first, TreeOperation second)
Creates a tree operation that first applies one tree operation and then applies a second operation to get it's resultstatic TreeOperation
TreeOperation.Utils. createScale(double scaleFactor, int resultingUnits)
Create a tree operation that scales the input tree and changes the unitsstatic TreeOperation
TreeOperation.Utils. getNoOperation()
Methods in pal.tree with parameters of type TreeOperation Modifier and Type Method Description static TreeOperation
TreeOperation.Utils. createPipeline(TreeOperation first, TreeOperation second)
Creates a tree operation that first applies one tree operation and then applies a second operation to get it's result
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