Uses of Interface
pal.misc.SampleInformation
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Packages that use SampleInformation Package Description pal.mep Classes for the analysis of "measurably evolving populations" (mep).pal.misc Classes that don't fit elsewhere ;^)pal.treesearch -
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Uses of SampleInformation in pal.mep
Methods in pal.mep with parameters of type SampleInformation Modifier and Type Method Description ConstraintModel
DeltaModel. buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
ConstraintModel
MutationRateModel.Factory. buildConstraintModel(SampleInformation si, MolecularClockLikelihoodModel.Instance likelihoodModel)
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Uses of SampleInformation in pal.misc
Classes in pal.misc that implement SampleInformation Modifier and Type Class Description class
TOCDSampleInformation
Title: TOCDSampleInformationMethods in pal.misc that return SampleInformation Modifier and Type Method Description SampleInformation
SampleInformation.Factory. createSampleInformation(java.lang.String[] allLeafIDs)
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Uses of SampleInformation in pal.treesearch
Constructors in pal.treesearch with parameters of type SampleInformation Constructor Description FixedBSRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate)
FixedSRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double rate)
MRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel)
MRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, double[] rateChangeTimes)
SRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel)
SRDTGlobalClockModel(SampleInformation sampleInformation, MolecularClockLikelihoodModel.Instance likelihoodModel, boolean allowMetaRate)
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