Package pal.tree
Class UPGMATree
- java.lang.Object
-
- pal.tree.SimpleTree
-
- pal.tree.UPGMATree
-
- All Implemented Interfaces:
java.io.Serializable
,IdGroup
,Report
,Units
,UnitsProvider
,Tree
public class UPGMATree extends SimpleTree
Deprecated.Use ClusterTreeconstructs a UPGMA tree from pairwise distances- Version:
- $Id: UPGMATree.java,v 1.10 2002/12/05 04:27:28 matt Exp $
- Author:
- Korbinian Strimmer, Alexei Drummond
- See Also:
- Serialized Form
-
-
Nested Class Summary
-
Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
-
Nested classes/interfaces inherited from interface pal.tree.Tree
Tree.TreeBase
-
-
Field Summary
-
Fields inherited from interface pal.misc.Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
-
-
Constructor Summary
Constructors Constructor Description UPGMATree(DistanceMatrix m)
Deprecated.constructor UPGMA tree
-
Method Summary
-
Methods inherited from class pal.tree.SimpleTree
createNodeList, findNode, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getIdCount, getIdentifier, getInternalNode, getInternalNodeCount, getRoot, getUnits, report, reroot, reroot, setAttribute, setIdentifier, setRoot, setUnits, toString, whichIdNumber
-
-
-
-
Constructor Detail
-
UPGMATree
public UPGMATree(DistanceMatrix m)
Deprecated.constructor UPGMA tree- Parameters:
m
- distance matrix
-
-