Uses of Interface
pal.substmodel.SingleSplitDistribution
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Packages that use SingleSplitDistribution Package Description pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.pal.substmodel Classes describing substitution models, i.e. -
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Uses of SingleSplitDistribution in pal.eval
Methods in pal.eval with parameters of type SingleSplitDistribution Modifier and Type Method Description static MolecularClockLikelihoodModel.Instance
SingleSplitMolecularClockLikelihoodModel. createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, double splitTime)
static MolecularClockLikelihoodModel.Instance
SingleSplitMolecularClockLikelihoodModel. createInstance(RateMatrixGroup beforeSplitMatrices, RateMatrixGroup afterSplitMatrics, NeoParameterized acrossSplitParameters, SingleSplitDistribution probabilityModel, LHCalculator.Factory baseFactory, double splitTime)
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Uses of SingleSplitDistribution in pal.substmodel
Classes in pal.substmodel that implement SingleSplitDistribution Modifier and Type Class Description class
ConstantIndependentSingleSplitDistribution
Title: ConstantIndependentSingleSplitDistributionclass
SaturatedSingleSplitDistribution
Title: SaturatedSingleSplitDistributionclass
VariableIndependentSingleSplitDistribution
Title: VariableIndependentSingleSplitDistribution
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