static GeneralREVRateMatrix |
GeneralREVRateMatrix.createGTR() |
Create a rate matrix equivalent to the GTR model
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static GeneralREVRateMatrix |
GeneralREVRateMatrix.createGTR(double[] defaultParameters) |
Create a rate matrix equivalent to the GTR model
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static GeneralREVRateMatrix |
GeneralREVRateMatrix.createGTR(double a,
double b,
double c,
double d,
double e) |
Create a rate matrix equivalent to the GTR model
Parameters laid out
*
-> + A C G T
A * a b c
C * * d e
G * * * 1
T * * * *
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static GeneralREVRateMatrix |
GeneralREVRateMatrix.createHKY() |
Create a rate matrix equivalent to the HKY model, the one parameter will be kappa
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static GeneralREVRateMatrix |
GeneralREVRateMatrix.createHKY(double defaultKappa) |
Create a rate matrix equivalent to the HKY model, the one parameter will be kappa
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