Class CodonModel

    • Constructor Detail

      • CodonModel

        protected CodonModel​(double[] f)
    • Method Detail

      • getInstance

        public static CodonModel getInstance​(int modelID,
                                             double[] params,
                                             double[] freq)
        Create codon substitution model according to model type
        Parameters:
        modelID - model code
        params - model parameters
        freq - model frequencies
        Returns:
        codon rate matrix
      • printRatios

        protected void printRatios​(java.io.PrintWriter out)