Package pal.distance

Class DistanceMatrixUtils

  • All Implemented Interfaces:
    java.io.Serializable

    public class DistanceMatrixUtils
    extends java.lang.Object
    implements java.io.Serializable
    Auxillary functions for distance matrices

    Version:
    $Id: DistanceMatrixUtils.java,v 1.6 2002/12/05 04:27:28 matt Exp $
    Author:
    Alexei Drummond
    See Also:
    Serialized Form
    • Constructor Detail

      • DistanceMatrixUtils

        public DistanceMatrixUtils()
    • Method Detail

      • squaredDistance

        public static double squaredDistance​(DistanceMatrix mat1,
                                             DistanceMatrix mat2,
                                             boolean weighted)
        compute squared distance to second distance matrix. If both matrices have the same size it is assumed that the order of the taxa is identical.
      • minus

        public static DistanceMatrix minus​(DistanceMatrix parent,
                                           int taxaToRemove)
        Returns a distance matrix with the specified taxa removed.