Package pal.eval
Interface SiteDetails
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public interface SiteDetails
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Nested Class Summary
Nested Classes Modifier and Type Interface Description static class
SiteDetails.Utils
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description SubstitutionModel
getRelatedModel()
double[]
getSiteLikelihoods()
Get the likelihoods for each site (not the log likelihoods)double[]
getSiteLogLikelihoods()
Get the likelihoods for each site (logged)double[]
getSitePosteriors(int site)
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Method Detail
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getRelatedModel
SubstitutionModel getRelatedModel()
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getSitePosteriors
double[] getSitePosteriors(int site)
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getSiteLikelihoods
double[] getSiteLikelihoods()
Get the likelihoods for each site (not the log likelihoods)- Returns:
- a double array of likelihoods matching each site
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getSiteLogLikelihoods
double[] getSiteLogLikelihoods()
Get the likelihoods for each site (logged)- Returns:
- a double array of log likelihoods matching each site
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