Uses of Interface
pal.misc.PalObjectListener
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Packages that use PalObjectListener Package Description pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.pal.mep Classes for the analysis of "measurably evolving populations" (mep).pal.misc Classes that don't fit elsewhere ;^)pal.substmodel Classes describing substitution models, i.e. -
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Uses of PalObjectListener in pal.eval
Classes in pal.eval that implement PalObjectListener Modifier and Type Class Description class
FastLikelihoodCalculator
Title: Fast Likelihood Calculator
Description: A fast likelihood calculator
Original code by Matthew Goode.class
GeneralLikelihoodCalculator
Title: General Likelihood Calculator
Description: A General likelihood calculator
This calculates the likelihood of an topologically invariant tree (on an unchanging alignment) quickly by remembering partial likelihoods of invariant subtrees, and by essentially generating site patterns for each sub tree. -
Uses of PalObjectListener in pal.mep
Methods in pal.mep with parameters of type PalObjectListener Modifier and Type Method Description void
DeltaModel.Instance. addPalObjectListener(PalObjectListener pol)
void
DeltaModel.Instance. removePalObjectListener(PalObjectListener pol)
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Uses of PalObjectListener in pal.misc
Methods in pal.misc that return PalObjectListener Modifier and Type Method Description static PalObjectListener
PalEventMulticaster. add(PalObjectListener old, PalObjectListener toAdd)
For managing PalObjectListeners Usage: PalObjectListener current = null; ...static PalObjectListener
PalEventMulticaster. remove(PalObjectListener old, PalObjectListener toRemove)
For managing PalObjectListeners Usage: PalObjectListener current = null; ...Methods in pal.misc with parameters of type PalObjectListener Modifier and Type Method Description static PalObjectListener
PalEventMulticaster. add(PalObjectListener old, PalObjectListener toAdd)
For managing PalObjectListeners Usage: PalObjectListener current = null; ...void
PalObjectListener.EventGenerator. addPalObjectListener(PalObjectListener pol)
static PalObjectListener
PalEventMulticaster. remove(PalObjectListener old, PalObjectListener toRemove)
For managing PalObjectListeners Usage: PalObjectListener current = null; ...void
PalObjectListener.EventGenerator. removePalObjectListener(PalObjectListener pol)
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Uses of PalObjectListener in pal.substmodel
Classes in pal.substmodel that implement PalObjectListener Modifier and Type Class Description class
CachedRateMatrix
a cached rate matrix.Methods in pal.substmodel with parameters of type PalObjectListener Modifier and Type Method Description void
AbstractRateMatrix. addPalObjectListener(PalObjectListener pol)
void
CachedRateMatrix. addPalObjectListener(PalObjectListener pol)
void
GeneralRateDistributionSubstitutionModel. addPalObjectListener(PalObjectListener l)
void
RateMatrix. addPalObjectListener(PalObjectListener pol)
Add a PalObjectListener to be notified of changes to the model.void
SingleClassSubstitutionModel. addPalObjectListener(PalObjectListener l)
void
SubstitutionModel. addPalObjectListener(PalObjectListener l)
void
AbstractRateMatrix. removePalObjectListener(PalObjectListener pol)
void
CachedRateMatrix. removePalObjectListener(PalObjectListener pol)
void
GeneralRateDistributionSubstitutionModel. removePalObjectListener(PalObjectListener l)
void
RateMatrix. removePalObjectListener(PalObjectListener pol)
void
SingleClassSubstitutionModel. removePalObjectListener(PalObjectListener l)
void
SubstitutionModel. removePalObjectListener(PalObjectListener l)
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