Package pal.tree
Interface ParameterizedTree
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- All Superinterfaces:
IdGroup
,Parameterized
,java.io.Serializable
,Tree
,Units
,UnitsProvider
- All Known Implementing Classes:
ClockTree
,DemographicClockTree
,LogParameterizedTree
,MutationRateModelTree
,UnconstrainedTree
public interface ParameterizedTree extends Parameterized, Tree
abstract base class for a tree with an Parameterized interface- Version:
- $Id: ParameterizedTree.java,v 1.21 2003/06/04 03:17:52 matt Exp $
- Author:
- Alexei Drummond, Korbinian Strimmer, Matthew Goode
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Nested Class Summary
Nested Classes Modifier and Type Interface Description static interface
ParameterizedTree.Factory
Factory interfacestatic class
ParameterizedTree.ParameterizedTreeBase
For parameterisations that work by adjusting a base tree (that is, they aren't really tree's themselves...)-
Nested classes/interfaces inherited from interface pal.misc.IdGroup
IdGroup.Utils
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Nested classes/interfaces inherited from interface pal.misc.Parameterized
Parameterized.Null, Parameterized.ParameterizedBase, Parameterized.ParameterizedUser, Parameterized.Utils
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Nested classes/interfaces inherited from interface pal.tree.Tree
Tree.TreeBase
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Field Summary
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Fields inherited from interface pal.misc.Units
DAYS, EXPECTED_SUBSTITUTIONS, GENERATIONS, MONTHS, SAMPLE, SHORT_UNIT_NAMES, UNIT_NAMES, UNKNOWN, YEARS
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description OrthogonalHints
getOrthogonalHints()
java.lang.String
getParameterizationInfo()
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Methods inherited from interface pal.misc.IdGroup
getIdCount, getIdentifier, setIdentifier, whichIdNumber
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Methods inherited from interface pal.misc.Parameterized
getDefaultValue, getLowerLimit, getNumParameters, getParameter, getUpperLimit, setParameter, setParameterSE
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Methods inherited from interface pal.tree.Tree
createNodeList, getAttribute, getCopy, getExternalNode, getExternalNodeCount, getInternalNode, getInternalNodeCount, getRoot, getUnits, setAttribute, setRoot
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Method Detail
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getOrthogonalHints
OrthogonalHints getOrthogonalHints()
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getParameterizationInfo
java.lang.String getParameterizationInfo()
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