Package pal.statistics
Interface TopologyTestEngine.StatisticsHandler
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- All Known Implementing Classes:
ShimodairaHasegawaStatistics
- Enclosing class:
- TopologyTestEngine
public static interface TopologyTestEngine.StatisticsHandler
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Method Summary
All Methods Instance Methods Abstract Methods Modifier and Type Method Description double[]
getOriginalTestStatistics(double[] originalOptimisedLogLikelihoods, int numberOfTopologies)
double[]
getPValues(double[] originalOptimisedLogLikelihoods, double[][] replicateLogLikelihoods, int numberOfReplicates, int numberOfTopologies)
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Method Detail
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getOriginalTestStatistics
double[] getOriginalTestStatistics(double[] originalOptimisedLogLikelihoods, int numberOfTopologies)
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getPValues
double[] getPValues(double[] originalOptimisedLogLikelihoods, double[][] replicateLogLikelihoods, int numberOfReplicates, int numberOfTopologies)
- Parameters:
originalOptimisedLogLikelihoods
- stored as [topology]replicateLogLikelihoods
- store as [replicate][topology]numberOfTopologies
- the number of topologiesnumberOfTopologies
- the number of replicates- Returns:
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