Package pal.tree

Class NeighborJoiningTree

  • All Implemented Interfaces:
    java.io.Serializable, IdGroup, Report, Units, UnitsProvider, Tree

    public class NeighborJoiningTree
    extends SimpleTree
    constructs a neighbor-joining tree from pairwise distances

    Saitou, N., and Nei, M., (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol, 4(4):406-425,
    Version:
    $Id: NeighborJoiningTree.java,v 1.12 2003/09/16 03:54:18 matt Exp $
    Author:
    Korbinian Strimmer, Alexei Drummond
    See Also:
    Serialized Form
    • Constructor Detail

      • NeighborJoiningTree

        public NeighborJoiningTree​(DistanceMatrix m)
        construct NJ tree
        Parameters:
        m - distance matrix