Package pal.alignment

Class ReadAlignment

  • All Implemented Interfaces:
    java.io.Serializable, Alignment, IdGroup, Report

    public class ReadAlignment
    extends AbstractAlignment
    reads aligned sequence data from plain text files.

    recognizes PHYLIP 3.4 INTERLEAVED, PHYLIP SEQUENTIAL, CLUSTAL and derived formats.

    Other features: - the dot as "copy character" is recognized, - all base characters are capitalized, - automatic data type estimation - determination of corresponding base frequencies.

    Version:
    $Id: ReadAlignment.java,v 1.7 2003/09/04 03:22:34 matt Exp $
    Author:
    Korbinian Strimmer, Alexei Drummond, Alex Moore a.d.moore@ex.ac.uk
    See Also:
    Serialized Form