Uses of Interface
pal.eval.UnconstrainedLikelihoodModel.Leaf
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Packages that use UnconstrainedLikelihoodModel.Leaf Package Description pal.eval Classes for evaluating evolutionary hypothesis (chi-square and likelihood criteria) and estimating model parameters.pal.treesearch -
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Uses of UnconstrainedLikelihoodModel.Leaf in pal.eval
Classes in pal.eval that implement UnconstrainedLikelihoodModel.Leaf Modifier and Type Class Description static class
SimpleUnconstrainedLikelihoodModel.LeafImpl
Methods in pal.eval that return UnconstrainedLikelihoodModel.Leaf Modifier and Type Method Description UnconstrainedLikelihoodModel.Leaf
UnconstrainedLikelihoodModel.Instance. createNewLeaf(int[] patternStateMatchup, int numberOfPatterns)
Create anew leaf calculatorUnconstrainedLikelihoodModel.Leaf
SimpleUnconstrainedLikelihoodModel.LeafImpl. getCopy()
UnconstrainedLikelihoodModel.Leaf
UnconstrainedLikelihoodModel.Leaf. getCopy()
Create a new Leaf calculator that has exactly the same properties as this one (but is different such that it may be used independently) -
Uses of UnconstrainedLikelihoodModel.Leaf in pal.treesearch
Methods in pal.treesearch that return UnconstrainedLikelihoodModel.Leaf Modifier and Type Method Description UnconstrainedLikelihoodModel.Leaf
ConstraintModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf
FixedBSRDTGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf
FixedSRDTGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf
GlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf
MRDTGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf
SRDTGlobalClockModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
UnconstrainedLikelihoodModel.Leaf
UnconstrainedModel. createNewFreeLeaf(int[] patternStateMatchup, int numberOfPatterns)
protected UnconstrainedLikelihoodModel.Leaf
AbstractLeafNode. createNewFreeLeafCalculator(GeneralConstructionTool tool)
UnconstrainedLikelihoodModel.Leaf
GeneralConstructionTool. createNewFreeLeafCalculator(int[] patternStateMatchup, int numberOfPatterns)
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