Uses of Interface
pal.math.OrderEnumerator
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Packages that use OrderEnumerator Package Description pal.math Classes for math stuff such as optimisation, numerical derivatives, matrix exponentials, random numbers, special function etc.pal.tree Classes for providing the data structure of trees, for constructing and modifying trees, and for parameterizing trees (e.g., clock constraint). -
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Uses of OrderEnumerator in pal.math
Methods in pal.math that return OrderEnumerator Modifier and Type Method Description OrderEnumerator
OrderEnumerator.OEFactory. createOrderEnumerator(int size)
For generating an ordering from 0..size-1.static OrderEnumerator
OrderEnumerator.Utils. getAdjusted(OrderEnumerator toAdjust, int adjustmentFactor)
static OrderEnumerator
OrderEnumerator.Utils. getAlternating(OrderEnumerator primary, OrderEnumerator secondary)
static OrderEnumerator
OrderEnumerator.Utils. getBiasAlternating(OrderEnumerator primary, OrderEnumerator secondary)
static OrderEnumerator
OrderEnumerator.Utils. getConstant(int index)
static OrderEnumerator
OrderEnumerator.Utils. getOrdered(int size)
static OrderEnumerator
OrderEnumerator.Utils. getRestricted(OrderEnumerator toRestrict, int minimum, int range)
static OrderEnumerator
OrderEnumerator.Utils. getShuffled(int size)
OrderEnumerator
OrthogonalHints. getSuggestedOrdering(OrderEnumerator defaultOrdering)
If there is a "best" ordering to use it can be specified here, if not should return nullstatic OrderEnumerator
OrderEnumerator.Utils. getZero()
Methods in pal.math with parameters of type OrderEnumerator Modifier and Type Method Description static OrderEnumerator
OrderEnumerator.Utils. getAdjusted(OrderEnumerator toAdjust, int adjustmentFactor)
static OrderEnumerator
OrderEnumerator.Utils. getAlternating(OrderEnumerator primary, OrderEnumerator secondary)
static OrderEnumerator
OrderEnumerator.Utils. getBiasAlternating(OrderEnumerator primary, OrderEnumerator secondary)
static OrderEnumerator
OrderEnumerator.Utils. getRestricted(OrderEnumerator toRestrict, int minimum, int range)
OrderEnumerator
OrthogonalHints. getSuggestedOrdering(OrderEnumerator defaultOrdering)
If there is a "best" ordering to use it can be specified here, if not should return null -
Uses of OrderEnumerator in pal.tree
Methods in pal.tree that return OrderEnumerator Modifier and Type Method Description OrderEnumerator
MutationRateModelTree. getSuggestedOrdering(OrderEnumerator defaultOrdering)
Methods in pal.tree with parameters of type OrderEnumerator Modifier and Type Method Description OrderEnumerator
MutationRateModelTree. getSuggestedOrdering(OrderEnumerator defaultOrdering)
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