Uses of Interface
pal.misc.Summarizable
-
Packages that use Summarizable Package Description pal.coalescent Classes to model population genetic processes using the coalescent.pal.mep Classes for the analysis of "measurably evolving populations" (mep).pal.misc Classes that don't fit elsewhere ;^) -
-
Uses of Summarizable in pal.coalescent
Classes in pal.coalescent that implement Summarizable Modifier and Type Class Description class
ConstantPopulation
This class models coalescent intervals for a constant population (parameter: N0=present-day population size).class
ConstExpConst
This class models a population that grows exponentially from an initial population size alpha N0 at time y to a size N0 at time x until the present-day.class
ConstExpGrowth
This class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0.class
DemographicModel
This abstract class contains methods that are of general use for modelling coalescent intervals given a demographic model.class
ExpandingPopulation
This class models a population that grows exponentially from an inital population size alpha N0 to a present-day size N0.class
ExponentialGrowth
This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate). -
Uses of Summarizable in pal.mep
Classes in pal.mep that implement Summarizable Modifier and Type Class Description class
ConstantMutationRate
This class models a constant mutation rate (parameter: mu = mutation rate).class
MutationRateModel
This abstract class contains methods that are of general use for modelling mutation rate changes over time.class
SteppedMutationRate
This class models a step-wise mutation rate.class
WindowedMutationRate
This class models a windowed mutation rate (parameter: mu = mutation rate). -
Uses of Summarizable in pal.misc
Classes in pal.misc that implement Summarizable Modifier and Type Class Description class
SimpleSummarizable
Constructors in pal.misc with parameters of type Summarizable Constructor Description SimpleSummarizable(Summarizable toImitate)
The Imitation constructor - for immitating another Summarizable object with minimum memory requirements
-