Uses of Interface
pal.algorithmics.StoppingCriteria.Factory
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Packages that use StoppingCriteria.Factory Package Description pal.algorithmics pal.treesearch -
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Uses of StoppingCriteria.Factory in pal.algorithmics
Methods in pal.algorithmics that return StoppingCriteria.Factory Modifier and Type Method Description static StoppingCriteria.Factory
StoppingCriteria.Utils. getCombined(StoppingCriteria.Factory[] subCriteria)
A stopping criteria that is a composite of a set of criteria, stops when at least one sub criteria wants to stopstatic StoppingCriteria.Factory
StoppingCriteria.Utils. getIterationCount(int maxIterationCount)
A stopping criteria that stops after a set number of iterationsstatic StoppingCriteria.Factory
StoppingCriteria.Utils. getNonExactUnchangedScore(int maxIterationCountAtCurrentScore, boolean matchBestScore, double tolerance)
A stopping criteria that works by counting how many iterations occur at a given score (either the best score or the current score) and stopping when score does not change after a set number of generationsstatic StoppingCriteria.Factory
StoppingCriteria.Utils. getUnchangedScore(int maxIterationCountAtCurrentScore, boolean matchBestScore)
A stopping criteria that works by counting how many iterations occur at a given score (either the best score or the current score) and stopping when score does not change after a set number of generationsMethods in pal.algorithmics with parameters of type StoppingCriteria.Factory Modifier and Type Method Description static StoppingCriteria.Factory
StoppingCriteria.Utils. getCombined(StoppingCriteria.Factory[] subCriteria)
A stopping criteria that is a composite of a set of criteria, stops when at least one sub criteria wants to stopvoid
SearchEngine. run(AlgorithmCallback callback, double initialScore, ObjectState subject, StoppingCriteria.Factory stoppingCriteria, Ranker ranker)
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Uses of StoppingCriteria.Factory in pal.treesearch
Methods in pal.treesearch with parameters of type StoppingCriteria.Factory Modifier and Type Method Description UndoableAction
UnrootedMLSearcher. getBranchLengthOptimiseAction(StoppingCriteria.Factory stopper)
UndoableAction
UnrootedMLSearcher. getBranchLengthWithModelOptimiseAction(StoppingCriteria.Factory stopper, MultivariateMinimum minimiser, int fxFracDigits, int xFracDigits)
UndoableAction
UnrootedMLSearcher. getFullSweepSPRAction(StoppingCriteria.Factory stopper)
UndoableAction
UnrootedMLSearcher. getNNIAction(StoppingCriteria.Factory stopper)
UndoableAction
UnrootedMLSearcher. getNNIBranchLengthOptimiseAction(StoppingCriteria.Factory stopper)
Assessor
UnrootedMLSearcher. getSimpleAssessor(StoppingCriteria.Factory stopper)
UndoableAction
UnrootedMLSearcher. getSPRAction(StoppingCriteria.Factory stopper)
UndoableAction
UnrootedMLSearcher. getSweepSPRAction(StoppingCriteria.Factory stopper)
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