A B C D E F G H I J K L M N O P Q R S T U V W X _
All Classes All Packages
All Classes All Packages
All Classes All Packages
A
- abortOnFirstJobFailure() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether seqexec trips on the first job failure.
- abortOnFristJobFailure() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Returns a boolean indicating whether to fail the aggregated job on detecting the first failure during execution of constituent jobs.
- abortOnFristJobFailure() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns a boolean indicating whether to fail the aggregated job on detecting the first failure during execution of constituent jobs.
- abortOnFristJobFailure() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Returns a boolean indicating whether to fail the aggregated job on detecting the first failure during execution of constituent jobs.
- Abstract - Class in edu.isi.pegasus.common.credential.impl
-
An abstract base class to be used by other CredentialHandler implementations.
- Abstract - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
An abstract implementation of the PoolInfoProvider.
- Abstract - Class in edu.isi.pegasus.planner.catalog.transformation.impl
-
An abstract base class that provides useful methods for all the TransformationCatalog Implementations to use.
- Abstract - Class in edu.isi.pegasus.planner.cluster
-
An abstract clusterer that the other clusterers can extend.
- Abstract - Class in edu.isi.pegasus.planner.cluster.aggregator
-
An abstract implementation of the JobAggregator interface, which the other implementations can choose to extend.
- Abstract - Class in edu.isi.pegasus.planner.code.generator
-
An Abstract Base class implementing the CodeGenerator interface.
- Abstract - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
An abstract implementation of the CondorStyle interface.
- Abstract - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An abstract implementation of the Profile Aggregators.
- Abstract - Class in edu.isi.pegasus.planner.selector.site
-
The Abstract Site selector.
- Abstract - Class in edu.isi.pegasus.planner.transfer.implementation
-
An abstract implementation that implements some of the common functions in the Implementation Interface that are required by all the implementations.
- Abstract() - Constructor for class edu.isi.pegasus.common.credential.impl.Abstract
-
The default constructor.
- Abstract() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
- Abstract() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract
- Abstract() - Constructor for class edu.isi.pegasus.planner.cluster.Abstract
-
The Abstract constructor.
- Abstract() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The default constructor.
- Abstract() - Constructor for class edu.isi.pegasus.planner.code.generator.Abstract
- Abstract() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
The default constructor.
- Abstract() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.Abstract
- Abstract() - Constructor for class edu.isi.pegasus.planner.selector.site.Abstract
- Abstract(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The overloaded constructor, that is called by the Factory to load the class.
- AbstractFileFactoryBasedMapper - Class in edu.isi.pegasus.planner.transfer.mapper.impl
-
The abstract class that serves as the base class for the File Factory based mappers.
- AbstractFileFactoryBasedMapper() - Constructor for class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
The default constructor.
- AbstractJob - Class in edu.isi.pegasus.planner.dax
- AbstractJob() - Constructor for class edu.isi.pegasus.planner.dax.AbstractJob
- AbstractJob(AbstractJob) - Constructor for class edu.isi.pegasus.planner.dax.AbstractJob
-
Copy constructor
- AbstractLogFormatter - Class in edu.isi.pegasus.common.logging.format
-
The abstract formatter that implements all of the functions except the addEvent function
- AbstractLogFormatter() - Constructor for class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
The default constructor.
- AbstractMultipleFTPerXFERJob - Class in edu.isi.pegasus.planner.transfer.implementation
-
An abstract implementation for implementations that can handle multiple file transfers in a single file transfer job.
- AbstractMultipleFTPerXFERJob(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
The overloaded constructor, that is called by the Factory to load the class.
- AbstractPerJob - Class in edu.isi.pegasus.planner.selector.site
-
The base class for the site selectors that want to map one job at a time.
- AbstractPerJob() - Constructor for class edu.isi.pegasus.planner.selector.site.AbstractPerJob
- AbstractRefiner - Class in edu.isi.pegasus.planner.transfer
-
An abstract implementation that implements some of the common functions in the Refiner Interface and member variables that are required by all the refiners.
- AbstractRefiner(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The overloaded constructor.
- AbstractSingleFTPerXFERJob - Class in edu.isi.pegasus.planner.transfer.implementation
-
An abstract implementation for implementations that can handle only a single file transfer in a single file transfer job.
- AbstractSingleFTPerXFERJob(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
The overloaded constructor, that is called by the Factory to load the class.
- AbstractSiteData - Class in edu.isi.pegasus.planner.catalog.site.classes
-
The abstract data class for Site classes.
- AbstractSiteData() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
- AbstractStrategy - Class in edu.isi.pegasus.planner.refiner.createdir
-
The interface that defines how the cleanup job is invoked and created.
- AbstractStrategy() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
- AbstractXMLPrintVisitor - Class in edu.isi.pegasus.planner.catalog.site.classes
-
The base class to be used by the various visitor implementors for displaying the Site Catalog in different XML formats
- AbstractXMLPrintVisitor() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Accept method for the SiteData classes that accepts a visitor
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Directory
-
Accept method for the SiteData classes that accepts a visitor
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServer
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Accepts a Site Data Visitor
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Accepts the visitor and calls visit method on the visitor accordingly
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.LocalDirectory
-
Accepts the visitor and calls visit method on the visitor accordingly
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Accept the visitor
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
-
Accepts the visitor and calls visit method on the visitor accordingly
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Accept method for the visitor interface
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Accept method for the visitor interface
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Accept method for the SiteStore object
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Accepts the visitor and calls visit method on the visitor accordingly
- accept(SiteDataVisitor) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerSharedDirectory
- accept(File, String) - Method in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
-
Tests if a specified file should be included in a file list.
- accept(File, String) - Method in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
-
Tests if a specified file should be included in a file list.
- accept(File, String) - Method in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter
-
Tests if a specified file should be included in a file list.
- acceptRequest(Object) - Method in class edu.isi.pegasus.planner.refiner.ThreadPool
-
Accepts an authentication request, that has to be serviced.
- actionmap - Static variable in class edu.isi.pegasus.common.util.Separator
-
Maps the action associated with a state and a character class.
- actionmap2 - Static variable in class edu.isi.pegasus.common.util.Separator
-
Maps the action associated with a state and char class.
- ACTUAL_FINISH_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the actual end time for a job.
- ACTUAL_START_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the actual start time for a job.
- ADag - Class in edu.isi.pegasus.planner.classes
-
This class object contains the info about a Dag.
- ADag() - Constructor for class edu.isi.pegasus.planner.classes.ADag
-
Initialises the class member variables.
- ADAG - Class in edu.isi.pegasus.planner.dax
-
This class provides the Java API to create DAX files. The DAX XML SCHEMA is available at http://pegasus.isi.edu/schema/dax-3.3.xsd and documentation available at http://pegasus.isi.edu/wms/docs/schemas/dax-3.3/dax-3.3.html The DAX consists of 6 parts the first 4 are optional and the last is optional.
- ADAG(String) - Constructor for class edu.isi.pegasus.planner.dax.ADAG
-
The Simple constructor for the DAX object
- ADAG(String, int, int) - Constructor for class edu.isi.pegasus.planner.dax.ADAG
-
DAX Constructor
- Adapter - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An adapter class that converts the SiteCatalogEntry class to older supported formats and vice-versa
- Adapter() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Adapter
- add - Variable in class edu.isi.pegasus.planner.client.TCClient
- add(boolean) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
Adds a boolean value to the bag
- add(PoolConfig) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Adds all the sites in a controlled fashion, to the existing map containing information about the sites.
- add(PoolConfig, boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Adds all the sites in a controlled fashion, to the existing map containing information about the sites.
- add(Job) - Method in class edu.isi.pegasus.planner.classes.ADag
-
This adds a new job to the ADAG object.
- add(Job) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Adds a job to the aggregated job.
- add(ReplicaLocation) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Adds replica catalog entries into the store.
- add(Invoke) - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Adds a Invoke object correpsonding to a notification.
- add(Node) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
Add tasks into the occupation diagram.
- add(Object, Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
Adds an object to the underlying bag corresponding to a particular key.
- add(Object, Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag
-
Adds an object to the underlying bag corresponding to a particular key.
- add(Object, Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Adds an object to the underlying bag corresponding to a particular key.
- add(Object, Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
Ignores the key and only adds the value .
- add(Object, Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
Adds an object to the underlying bag corresponding to a particular key.
- add(String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Add to the log message with just a value.
- add(String) - Method in class edu.isi.pegasus.common.logging.format.Simple
-
Add to the log message with just a value.
- add(String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Add to the log message with just a value.
- add(String) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Add to the internal log buffer message a value with the default key.
- add(String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Adds to the internal XML representation.
- add(String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
-
Adds an XML fragment to the internal XML store
- add(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
Adds to the end of the chain.
- add(String, double) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a double.
- add(String, float) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a float.
- add(String, int) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add an int.
- add(String, long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a long.
- add(String, SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Adds a SiteInfo object to the container.
- add(String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a string.
- add(String, String) - Method in interface edu.isi.pegasus.common.logging.Event
-
Add to the log message.
- add(String, String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Add to the log message for the event on the top.
- add(String, String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Add to the log message.
- add(String, String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Add to the log message.
- add(String, String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Add to the log message.
- add(String, String) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Add to the internal log buffer message a value with the key oassed The buffer is logged later when the log() method is called.
- add(String, Collection) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Adds replica catalog entries into the store.
- add(Map) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Adds ReplicaCatalogEntries into the store.
- addAbstractJob(AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add AbstractJob to the DAX
- addAbstractJobs(List<AbstractJob>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add AbstractJobs to the DAX
- addAlias(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Adds an alias site handle.
- addAll(Notifications) - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Adds all the notifications passed to the underlying container.
- addAll(Invoke.WHEN, Collection<Invoke>) - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Convenience method at add all the notifications corresponding to a particular event
- addArgument(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Adds filename to the arguments
- addArgument(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a file object to the argument List.
- addArgument(File) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Adds a file name to the argument string
- addArgument(File[]) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a Array of
File
objects to the argument list. - addArgument(File[], String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a Array of
File
objects to the argument list. - addArgument(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a string argument to the argument List.
- addArgument(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Adds text to the arguments string
- addArgument(String, File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and File value to the argument List.
The argkey and argvalue are seperated by space.
Example addArgument("-i",new File("f.a")) will result in the argument being added as -i <file name="f.a">
Multiple calls to addArgument results in the arguments being separated by space. - addArgument(String, File[]) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and an array of Files to the argument List.
The argkey and argvalue are separated space.
The files are separated by a space
Example:
File[] files = {new File("f.a1"), new File("f.a2")};
job.addArgument("-i",files)
will result in the argument being added as -i <file name="f.a1"> <file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space. - addArgument(String, File[], String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and an array of Files to the argument List.
The argkey and argvalue are separated by the argdelimiter.
The files are separated by a filedelimiter
Example:
File[] files = {new File("f.a1"), new File("f.a2")};
job.addArgument("-i",files,"=",",")
will result in the argument being added as -i=<file name="f.a1">,<file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space. - addArgument(String, File, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and File value to the argument List.
The argkey and argvalue are separated by the argdelimiter.
Example addArgument("-i",new File("f.a"),"=") will result in the argument being added as -i=<file name="f.a">
Multiple calls to addArgument results in the arguments being separated by space. - addArgument(String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and value to the argument List.
- addArgument(String, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and value to the argument List.
The argkey and argvalue are seperated by argdelimiter.
Example addArgument("-p","0","=") will result in the argument being added as -p=0
Multiple calls to addArgument results in the arguments being separated by space. - addArgument(String, List<File>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and a List of Files to the argument List.
The argkey and argvalue are separated space.
The files are separated by a space
Example:
Listfiles = new LinkedList ();
files.add(new File("f.a1"));
files.add(new File("f.a2"));
job.addArgument("-i",files)
will result in the argument being added as -i <file name="f.a1"> <file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space. - addArgument(String, List<File>, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a argument key and a List of Files to the argument List.
The argkey and argvalue are separated by the argdelimiter.
The files are separated by a filedelimter
Example:
Listfiles = new LinkedList ();
files.add(new File("f.a1"));
files.add(new File("f.a2"));
job.addArgument("-i",files,"=",",")
will result in the argument being added as -i=<file name="f.a1">,<file name="f.a2">
Multiple calls to addArgument results in the arguments being separated by space. - addArgument(List<File>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a List of
File
objects to the argument list. - addArgument(List<File>, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a List of
File
objects to the argument list. - addAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Adds an attribute to the set of attributes.
- addAttribute(String, String) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Adds an attribute.
- addAttribute(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Adds attributes to the existing attributes.
- addAttributes(List, List) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Add multiple attributes to the machine info element.
- addBulk() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
-
Adds multiple entries into the TC.
- addChild(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Adds a child to end of the child list.
- addCleanupJobs(ADag) - Method in class edu.isi.pegasus.planner.refiner.CleanupEngine
-
Adds the cleanup jobs in the workflow that removes the files staged to the remote site.
- addCleanupJobs(Graph) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupStrategy
-
Adds cleanup jobs to the workflow.
- addCleanupJobs(Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Adds cleanup jobs to the workflow.
- addCleanUpJobs(String, Set, Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Adds cleanup jobs for the workflow scheduled to a particular site a breadth first search strategy is implemented based on the depth of the job in the workflow
- addCleanupNodesForWorkerPackage(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Adds cleanup nodes in the workflow for sites specified.
- addCleanupPostScript(Job, List) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Adds a /bin/rm post constituentJob to kickstart that removes the files passed.
- addConnection(Connection) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Adds a connection parameter
- addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
It modifies the concrete dag passed in the constructor and adds the create random directory nodes to it at the root level.
- addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.Minimal
-
Modifies the workflow to add create directory nodes.
- addCreateDirectoryNodes(ADag) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Strategy
-
Modifies the workflow to add create directory nodes.
- addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.Tentacles
-
Modifies the workflow to add create directory nodes.
- addCreateDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.CreateDirectory
-
It modifies the concrete dag passed in the constructor and adds the create random directory nodes to it at the root level.
- addCreateDirectoryNodes(ADag, Set<String>) - Method in class edu.isi.pegasus.planner.refiner.createdir.Minimal
-
Adds create dir nodes to the workflow.
- addCredentialType(String, CredentialHandler.TYPE) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds a type of credential that will be required by a job.
- addCredentialType(String, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Looks at a URL to determine whether a credential should be associated with a job or not.
- addDAG(DAG) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a DAG job to the DAX
- addDAGs(List<DAG>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add multiple DAG jobs to the DAX
- addDataDependencies() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to automatically add edges as a result of underlying data dependecnies between jobs.
- addDataDependencies() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Goes through the ADag and computes any data dependencies.
- addDAX(DAX) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a DAX job to the DAX
- addDAXs(List<DAX>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add multiple DAX jobs to the DAX
- addDefaultTCEntry(String, String, SysInfo, boolean, String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- addDefaultTCEntryForPegasusWebsite(String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns a default TC entry for the pegasus site.
- addDependantFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Adds a dependant file.
- addDependency(Job) - Method in class edu.isi.pegasus.planner.refiner.createdir.Minimal
- addDependency(AbstractJob, AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a parent child dependency between two jobs,dax,dag
- addDependency(AbstractJob, AbstractJob, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a parent child dependency with a dependency label
- addDependency(String, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a parent child dependency between two jobs,dax,dag
- addDependency(String, String, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a parent child dependency with a dependency label
- addDestination(NameValue) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Adds a destination URL for the transfer.
- addDestination(String, String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Adds a destination URL for the transfer.
- addDirectory(Directory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Adds a directory internally.
- addDirectory(SiteCatalogEntry3, Directory) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.Adapter
-
Adds a directory to the site catalog entry object.
- addEdge(GraphNode, GraphNode) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds an edge between two already existing nodes in the graph.
- addEdge(GraphNode, GraphNode) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Adds an edge between two already existing nodes in the graph.
- addEdge(GraphNode, GraphNode) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Adds an edge between two already existing nodes in the graph.
- addEdge(GraphNode, GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Adds an edge between two already existing nodes in the graph.
- addEdge(String, String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds an edge between two already existing nodes in the graph.
- addEdge(String, String) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Adds an edge between two already existing nodes in the graph.
- addEdge(String, String) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Adds an edge between two already existing nodes in the graph.
- addEdge(String, String) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Adds an edge between two already existing nodes in the graph.
- addEdges(String, List) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
A convenience method that allows for bulk addition of edges between already existing nodes in the graph.
- addEdges(String, List) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
A convenience method that allows for bulk addition of edges between already existing nodes in the graph.
- addEdges(String, List<String>) - Method in class edu.isi.pegasus.planner.classes.ADag
-
A convenience method that allows for bulk addition of edges between already existing nodes in the graph.
- addEdges(String, List<String>) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
A convenience method that allows for bulk addition of edges between already existing nodes in the graph.
- addEntry() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
-
Adds a single entry into the TC.
- addEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Adds a site catalog entry to the store.
- addEntry(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Adds an entry into the store.
- addEntry(EnvEntry) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Adds an environment entry, effectively a key value pair, to the current environment settings.
- addEntry(String, String) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Adds an environment entry, effectively a key value pair, to the current environment settings.
- addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Adds the event that is to be associated with the log messages onto an internal stack
- addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.Netlogger
-
Adds the event that is to be associated with the log messages onto an internal stack
- addEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.Simple
-
Adds the event that is to be associated with the log messages onto an internal stack
- addEvent(String, String, String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Adds the event that is to be associated with the log messages onto an internal stack
- addEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.Netlogger
-
Adds the event that is to be associated with the log messages onto an internal stack
- addEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.Simple
-
Adds the event that is to be associated with the log messages onto an internal stack
- addEvent(String, Map<String, String>) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Adds the event that is to be associated with the log messages onto an internal stack
- addExecutable(Executable) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Executable to the DAX
- addExecutables(List<Executable>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Multiple Executable objects to the DAX
- addFile(File) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a RC File object to the top of the DAX.
- addFiles(List<File>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Files to the RC Section on top of the DAX
- addFileServer(FileServer) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Adds a FileServer that can access this directory.
- addFilesForTransfer(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds an input file that is to be transferred from the submit host via the Condor File Transfer Mechanism.
- addFilesForTransfer(Collection<String>, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds multiple files that are to be transferred from the submit host via the Condor File Transfer Mechanism.
- addGridGateway(GridGateway) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Add a GridGateway to the site.
- addGridGateway(GridGateway) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Add a GridGateway to the site.
- addIn(Edge) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
add a data dependency edge to this task
- addInputFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds an input file to the underlying collection of input files associated with the job.
- addInterSiteTXNodes(Job, Collection, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds the inter pool transfer nodes that are required for transferring the output files of the parents to the jobs execution site.
- addInterSiteTXNodes(Job, Collection, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Adds the inter pool transfer nodes that are required for transferring the output files of the parents to the jobs execution site.
- addInterSiteTXNodes(Job, Collection, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Adds the inter pool transfer nodes that are required for transferring the output files of the parents to the jobs execution site.
- addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add notification to the job
- addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a Notification for this Workflow
- addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a Notification for this Executable Same as add Notification
- addInvoke(Invoke) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Add a Notification for this Transformation
- addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add Notification to the job
- addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a Notification for this Workflow
- addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a Notification for this Executable same as addNotification
- addInvoke(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Add a Notification for this Transformation
- addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add Notifications to the job
- addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a List of Notifications for this Workflow
- addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a List of Notifications for this Executable Same as addNotifications
- addInvokes(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Add a List of Notifications for this Transformation
- addIPFileForTransfer(String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds an input file that is to be transferred from the submit host via the Condor File Transfer Mechanism.
- addIPFileForTransfer(Collection<String>) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds multiple files that are to be transferred from the submit host via the Condor File Transfer Mechanism.
- addItem(Object, String, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Helper function to assemble various pieces.
- addJob(int, Job) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Inserts a Job into a specific position of the job list.
- addJob(Job) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Adds jobs to the internal map of jobs that is maintained by the clusterer.
- addJob(Job) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Add a new job to the workflow being refined.
- addJob(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Add a new job to the workflow being refined.
- addJob(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Add a new job to the workflow being refined.
- addJob(Job) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Job to the DAX
- addJob(Job) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Appends a job to the list of jobs.
- addJobs(List<Job>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add multiple Jobs to the DAX
- addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add additional profile to a logical transformation .
- addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add additional profile to a logical transformation .
- addLFNProfile(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add additional profile to a logical transformation .
- addLFNProfile(String, String, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Add additional profile to a logical transformation .
- addLineToText(StringBuffer, String, String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
Convenience method to add a line to the internal textual representation.
- addList(String, List) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- addLogicalTr(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Adds a logical entry to the logicaltx table
- addMachineInfo(MachineInfo) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Add a
MachineInfo
element. - addMap(String, Map) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a Map to the buffer.
- addMetaData(MetaData) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a
MetaData
object for the Catalog object - addMetaData(String, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a Metadata entry for the Catalog object
- addMetaData(List<MetaData>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a List of
MetaData
objects to the Catalog entry object - addMsg(String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add an natural language message to the log message.
- addNewRelation(String, String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds a new PCRelation pair to the Vector of
PCRelation
pairs. - addNode(GraphNode) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds a node to the Graph.
- addNode(GraphNode) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Adds a node to the Graph.
- addNode(GraphNode) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Adds a node to the Graph.
- addNode(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Adds a node to the Graph.
- addNode(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Adds a node to the partition.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Adds a Invoke object correpsonding to a notification.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds a Invoke object corresponding to a notification.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Adds a Invoke object correpsonding to a notification.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds a Invoke object correpsonding to a notification.
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add notification to the job
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a Notification for this Workflow
- addNotification(Invoke) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a Notification for this Executable Same as addInvoke
- addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add Notification to the job
- addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a Notification for this Workflow
- addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a Notification for this Executable same as addInvoke
- addNotification(Invoke.WHEN, String) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Add a Notification for this Transformation same as addInvoke()
- addNotifications(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds all the notifications specfied in the TransformationCatalogEntry to the underlying job notifications.
- addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Adds all the notifications passed to the underlying container.
- addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds all the notifications passed to the underlying container.
- addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Adds all the notifications passed to the underlying container.
- addNotifications(Notifications) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds all the notifications passed to the underlying container.
- addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add Notifications to the job
- addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add a List of Notifications for this Workflow
- addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Add a List of Notifications for this Executable.
- addNotifications(List<Invoke>) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Add a List of Notifications for this Transformation.
- addOPFileForTransfer(String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds an output file that is to be transferred from the submit host via the Condor File Transfer Mechanism.
- addOPFileForTransfer(Collection<String>) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds multiple output files that are to be transferred from the submit host via the Condor File Transfer Mechanism.
- addOut(Edge) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
add a data dependency edge from this task
- addOutputFile(PegasusFile) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds an output file to the underlying collection of output files associated with the job.
- addPair(String, String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a key,value pair The result looks like: key = (pairKey, pairValue)
- addParent(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Adds a parent to end of the parent list.
- addParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Ends up assigning the parents to a particular node.
- addPFN(ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Add a PFN and it's attributes.
- addPFN(PFN) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Adds a PFN specified in the DAX to the object
- addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add additional profile to a physical transformation.
- addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add additional profile to a physical transformation.
- addPFNProfile(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add additional profile to a physical transformation.
- addPFNProfile(String, TCType, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Add additional profile to a physical transformation.
- addPFNs(List) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Add a PFN and it's attributes.
- addPhysicalFile(PFN) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a PFN object to the Catalog
- addPhysicalFile(String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a pfn url to the Catalog
- addPhysicalFile(String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a PFN url and a site id to the Catalog
- addPhysicalFiles(List<PFN>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a list of PFN objects to the Catalog
- addPhysicalTr(String, String, TCType, long) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Adds a physical entry to the physicaltxtable
- addProfile(Profiles.NAMESPACES, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Add a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Adds a profile.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Allows you to add one profile at a time to the transformation.
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.classes.Job
-
Adds a profile to the job object
- addProfile(Profile, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add a lfn or pfn profile to the TC
- addProfile(Profile) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a Profile object
- addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a profile to the job
- addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a profile to the catalog entry
- addProfile(Profile.NAMESPACE, String, String) - Method in class edu.isi.pegasus.planner.dax.PFN
- addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Add a profile.
- addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a profile to the job
- addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a profile to the catalog entry
- addProfile(String, String, String) - Method in class edu.isi.pegasus.planner.dax.PFN
- addProfileDirectly(Profiles.NAMESPACES, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Add a profile.
- addProfileDirectly(Profile) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds a profile directly to namespace bypassing any underlying namespace specific checks.
- addProfileDirectly(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Add a profile.
- addProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds multiple profiles.
- addProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Allows you to add one profile at a time to the transformation.
- addProfiles(Profile) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a Profile object to this Catalog entry
- addProfiles(Profile) - Method in class edu.isi.pegasus.planner.dax.PFN
- addProfiles(List) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Allows you to add multiple profiles to the transformation.
- addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds multiple profiles.
- addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Add a list of Profile objects
- addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Add a List of profile objects to this Catalog entry
- addProfiles(List<Profile>) - Method in class edu.isi.pegasus.planner.dax.PFN
- addProfilesDirectly(Profiles) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds multiple profiles .
- addProfilesDirectly(List<Profile>) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Adds multiple profiles to namespace bypassing any underlying namespace specific checks.
- addProperties(Properties, Properties) - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Adds new properties to an existing set of properties while substituting variables.
- addRegistrationFiles(FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Adds a single file for registration.
- addRegistrationFiles(Collection) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Adds a Collection of File transfer to the underlying collection of files to be registered.
- addRegistrationFiles(Collection) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Adds a Collection of File transfer to the underlying collection of files to be registered.
- addRelation(String, String) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds a new relation to the workflow being refiner.
- addRelation(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Adds a new relation to the workflow being refiner.
- addRelation(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Adds a new relation to the workflow being refiner.
- addRelation(String, String, String, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds a new relation to the workflow.
- addRelation(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Adds a new relation to the workflow.
- addRelation(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
Adds a new relation to the workflow.
- addRelation(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Adds a new relation to the workflow.
- addRemoveDirectoryNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Modifies the workflow to add remove directory nodes.
- addRemoveDirectoryNodes(ADag, Set<String>) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Adds create dir nodes to the workflow.
- addReplicaCatalog(ReplicaCatalog) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Add a Replica Catalog to the site.
- addReplicaCatalog(ReplicaCatalog) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Add a Replica Catalog to the site.
- addRoot(GraphNode) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Adds a single root node to the Graph.
- addRoot(GraphNode) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Adds a single root node to the Graph.
- addRoot(GraphNode) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Adds a single root node to the Graph.
- addRoot(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Adds a single root node to the Graph.
- addSetupNodes(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Adds a setup node per execution site in the workflow that will stage the worker node executables to the workdirectory on the sites the workflow has been scheduled to.
- addSetupNodesWithoutUntarNodes(ADag, Set<String>) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Adds only the stage worker nodes to the workflow.
- addSetupNodesWithUntarNodes(ADag, Set<String>) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Adds untar nodes to the workflow, in addition to the stage worker nodes
- addSetXBitJobs(Job, Job, Collection) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Adds the dirmanager to the workflow, that do a chmod on the files being staged.
- addSetXBitJobs(Job, String, Collection, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
- addSetXBitJobs(Job, String, Collection, int, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
- addSetXBitJobs(Job, String, Collection, int, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
- addSource(NameValue) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Adds a source URL for the transfer.
- addSource(String, String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Adds a source URL for the transfer.
- addStageInXFERNodes(Job, boolean, Collection, int, Map<String, BalancedCluster.PoolTransfer>, BalancedCluster.BundleValue, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, boolean, Collection, int, Map<String, Bundle.PoolTransfer>, Bundle.BundleValue, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, boolean, Collection, int, Map<String, Bundle.PoolTransfer>, Bundle.BundleValue, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Default behaviour to preserve backward compatibility when the stage in and symbolic link jobs were not separated.
- addStageInXFERNodes(Job, Collection<FileTransfer>, String, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, String, Implementation) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Default behaviour to preserve backward compatibility when the stage in and symbolic link jobs were not separated.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageInXFERNodes(Job, Collection<FileTransfer>, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Adds the stage in transfer nodes which transfer the input files for a job, from the location returned from the replica catalog to the job's execution pool.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds the stageout transfer nodes, that stage data to an output site specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Adds the stageout transfer nodes, that stage data to an output site specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Adds the stageout transfer nodes, that stage data to an output site specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Adds the stageout transfer nodes, that stage data to an output site specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Adds the stageout transfer nodes, that stage data to an output site specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Adds the stageout transfer nodes, that stage data to an output site specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Adds the stageout transfer nodes, that stage data to an output site specified by the user.
- addStageOutXFERNodes(Job, Collection, ReplicaCatalogBridge, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Adds the stageout transfer nodes, that stage data to an output site specified by the user.
- addStatCall(int, StatCall) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Inserts a StatCall into a specific position of the stat list.
- addStatCall(StatCall) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Appends a stat to the list of stats.
- addSubExpression(StringBuffer, String, Integer) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Adds a sub expression to a string buffer
- addSubExpression(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Adds a sub expression to a string buffer
- addSysInfo(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Adds a system information entry into the TC.
- addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add an single entry into the transformation catalog.
- addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add an single entry into the transformation catalog.
- addTCEntry(String, String, String, String, TCType, String, List, List, SysInfo, Notifications, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add an single entry into the transformation catalog.
- addTime(String, long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- addTimeStamp() - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a timestamp to the message.
- addToFile(File, OutputStream) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Adds contents to an output stream.
- addToForwardOptions(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Parses the argument in form of option=[value] and adds to the options that are to be passed ahead to pegasus-run.
- addToNonStandardJavaOptions(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Adds to the Set of non standard JAVA options that need to be passed to the JVM.
- addToStagingSitesMappings(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Adds to the staging sites
- addToStagingSitesMappings(String, String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Adds to the staging sites
- addTransfer(FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Adds a file transfer to the underlying collection.
- addTransfer(FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Adds a file transfer to the underlying collection.
- addTransfer(FileTransfer, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Adds a file transfer to the appropriate TransferContainer.
- addTransfer(FileTransfer, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
Adds a single
FileTransfer
objects to the appropriate TransferContainer. - addTransfer(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
Adds a file transfer to the appropriate TransferChain.
- addTransfer(Collection) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Adds a file transfer to the underlying collection.
- addTransfer(Collection) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Adds a file transfer to the underlying collection.
- addTransfer(Collection<FileTransfer>, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
Adds a a collection of
FileTransfer
objects to the appropriate TransferContainer. - addTransfer(Collection, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Adds a a collection of
FileTransfer
objects to the appropriate TransferContainer. - addTransferNodes(ReplicaCatalogBridge, PlannerCache) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Adds the transfer nodes to the workflow.
- addTransformation(Transformation) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Transformation to the DAX
- addTransformations(List<Transformation>) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Add Multiple Transformation to the DAX
- addVector(Vector, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Adds elements (PegasusFile type) in a Vector to another Vector and returns the new Vector.
- addWQ(String, String) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Add a string.
- AggregatedJob - Class in edu.isi.pegasus.planner.classes
-
This class holds all the specifics of an aggregated job.
- AggregatedJob() - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob
-
The default constructor.
- AggregatedJob(int) - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob
-
The overloaded constructor.
- AggregatedJob(Job, int) - Constructor for class edu.isi.pegasus.planner.classes.AggregatedJob
-
The overloaded constructor.
- aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Returns the arguments with which the
AggregatedJob
needs to be invoked with. - aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Returns the arguments with which the
AggregatedJob
needs to be invoked with. - aggregatedJobArguments(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns the arguments with which the
AggregatedJob
needs to be invoked with. - aggregator(String) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Returns the aggregator to be used for the profile key while merging.
- Aggregator - Interface in edu.isi.pegasus.planner.namespace.aggregator
-
An internal interface, that allows us to perform aggregation functions on profiles during merging of profiles.
- aix - edu.isi.pegasus.planner.dax.Executable.OS
- AIX - edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
- AIX - edu.isi.pegasus.planner.dax.Executable.OS
- AIX - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- Algorithm - Class in edu.isi.pegasus.planner.selector.site.heft
-
The HEFT based site selector.
- Algorithm(PegasusBag) - Constructor for class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The default constructor.
- all - edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
- all - edu.isi.pegasus.planner.dax.Invoke.WHEN
- All - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
-
This implementation of the mapper generates maps for sites with installed as well as stageable transformations.
- All(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.All
-
The private constructor.
- ALL_POST_SCRIPT_SCOPE - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The postscript mode in which post scripts are added only for all jobs.
- ALL_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
The constant to denote that all transfers are to be exectuted remotely
- ALL_SITES - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The constant to apply to all sites.
- ALL_SITES - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The constant to apply to all sites.
- ALL_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which all transfers need to be TPT.
- ALL_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that all transfers are to be executed on the remote site.
- ALL_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which all TPT transfers need to be executed on the remote site.
- ALL_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that all transfers are to be third party.
- ALL_TRANSFER_PRIORITY_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
Default properties that applies priorities to all kinds of transfer jobs.
- ALL_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The property name to get the sites for which all transfers need to be executed remotely.
- allowExists - Variable in class edu.isi.pegasus.gridftp.MakeDirectoryCommand
- amd64 - edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- AMD64 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- ancestors - Variable in class edu.isi.pegasus.planner.provisioner.Node
- ancET - Variable in class edu.isi.pegasus.planner.provisioner.Node
- append(StringBuffer, String, int) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Appends a key=value pair to the StringBuffer.
- append(StringBuffer, String, Object, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Appends a key value mapping to the StringBuffer.
- append(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Appends a key=value pair to the StringBuffer.
- append(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Appends a key=value pair to the StringBuffer.
- append(StringBuffer, String, String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
- appendArrayList(ArrayList, ArrayList) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
It appends the source list at the end of the destination list.
- appendAttribute(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Appends an xml attribute to the xml feed.
- appendAttribute(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Appends an xml attribute to the xml feed.
- APPENDER - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Appends a property to the StringBuffer, in the java command line format.
- appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Appends a property to the StringBuffer, in the java command line format.
- appendProperty(StringBuffer, String, String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Appends a property to the StringBuffer, in the java command line format.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Boot
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.CPU
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.File
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in interface edu.isi.pegasus.planner.invocation.HasText
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Stamp
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.Uname
-
Appends a piece of text to the existing text.
- appendValue(String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Appends a piece of text to the existing text.
- apply(AggregatedJob) - Method in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle
-
Apply a style to an AggregatedJob
- apply(AggregatedJob) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Apply a style to an AggregatedJob
- apply(Job) - Method in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle
-
Apply a style to a job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Applies the condor style to the job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
Applies the CondorC style to the job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorG
-
Applies the globus style to the job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN
-
Applies the style to the job to be run in a condor glide in environment.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CreamCE
-
Applies the CREAM CE style to the job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Applies the gLite style to the job.
- apply(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.SSH
-
Applies the CREAM CE style to the job.
- applyCredentialsForJobSubmission(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Associates credentials required for job submission.
- applyCredentialsForLocalExec(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Examines the credential requirements for a job and adds appropiate transfer and environment directives for the credentials to be picked up for the local job
- applyCredentialsForRemoteExec(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Examines the credential requirements for a job and adds appropiate transfer and environment directives for the credentials to be staged and picked up by the job.
- applyJobPriorities(Graph) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Adds job priorities to the jobs in the workflow on the basis of the levels in the traversal order given by the iterator.
- applyPriority(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Applies priorities to the transfer jobs if a priority is specified in the properties file.
- applyPriority(TransferJob) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Applies priorities to the transfer jobs if a priority is specified in the properties file.
- applyStyle(Job, PrintWriter) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Applies a submit file style to the job, according to the fact whether the job has to be submitted directly to condor or to a remote jobmanager via CondorG and GRAM.
- arch - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Architecture of the system.
- Arch - Class in edu.isi.pegasus.planner.catalog.transformation.classes
- Arch(String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- ARCH - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "arch".
- ARCH() - Constructor for enum edu.isi.pegasus.planner.dax.Executable.ARCH
- ARCH_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the architecture type of the remote machines to which the jobmanager talks to.
- Architecture - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- Architecture() - Constructor for enum edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- Architecture() - Constructor for class edu.isi.pegasus.planner.invocation.Architecture
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- ARCHMODE_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The archmode attribute for the uname
- ARG_DELIMITER - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
- ArgEntry - Class in edu.isi.pegasus.planner.invocation
-
This class carries an argument vector entry for the argument vector.
- ArgEntry() - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- ArgEntry(int) - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry
-
C'tor: Prepares a given key for accepting a value later on.
- ArgEntry(int, String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgEntry
-
C'tor: Fully initializes the class
- argsmap - Variable in class edu.isi.pegasus.planner.client.TCClient
- ArgString - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
- ArgString() - Constructor for class edu.isi.pegasus.planner.invocation.ArgString
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- ArgString(String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgString
-
Constructs an applications without arguments.
- ArgString(String, String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgString
-
Constructs an applications with arguments.
- Arguments - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
- Arguments() - Constructor for class edu.isi.pegasus.planner.invocation.Arguments
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- Arguments() - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
The default constructor
- Arguments(String) - Constructor for class edu.isi.pegasus.planner.invocation.Arguments
-
Constructs an applications without arguments.
- ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for task arguments.
- ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that denotes the arguments of the job.
- ArgVector - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
- ArgVector() - Constructor for class edu.isi.pegasus.planner.invocation.ArgVector
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- ArgVector(String) - Constructor for class edu.isi.pegasus.planner.invocation.ArgVector
-
Constructs an applications without arguments.
- assignDefaultJobPriorities() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether we assign job priorities or not to the jobs Referred to by the "pegasus.job.priority.assign" property.
- assignLevels(Graph, GraphNode) - Method in class edu.isi.pegasus.planner.refiner.ReduceEdges
-
Prunes redundant edges from the workflow.
- assimilate(PegasusProperties, Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Assimilate the profiles in the namespace in a controlled manner.
- assimilate(PegasusProperties, Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Assimilate the profiles in the namespace in a controlled manner.
- assimilateJobs() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Puts the jobs in the abstract workflow into the job that is index by the logical name of the jobs.
- associate(POSTScript) - Static method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Associates a shortname with the classname.
- associate(Partition, Job) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Maps the partition to the corresponding clustered job.
- associate(String, String) - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Associates a VDS property with the new pegasus property.
- associate(String, String) - Static method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Associates a shortname with the classname.
- associateCredentials(Job, Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Associates credentials with the job corresponding to the files that are being transferred.
- at_end - edu.isi.pegasus.planner.dax.Invoke.WHEN
- attributeNotSupported(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
This is called when an attribute is encountered for an element that is valid in the schema context but not supported right now.
- attributes(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Slurps all attributes from related to a mapping into a map.
- authenticate() - Method in class edu.isi.pegasus.planner.refiner.AuthenticateEngine
-
It returns a set of pools against which the user can authenticate to.
- authenticate(AuthenticateRequest) - Method in class edu.isi.pegasus.planner.refiner.Authenticate
-
Authenticates against a resource referred to in the authenticate request object.
- Authenticate - Class in edu.isi.pegasus.planner.refiner
-
It takes in a authenticate request and authenticates against the resource on the basis of the type of the resource against which authentication is required.
- Authenticate(PegasusProperties, PoolInfoProvider) - Constructor for class edu.isi.pegasus.planner.refiner.Authenticate
-
The overloaded constructor.
- Authenticate.HostPort - Class in edu.isi.pegasus.planner.refiner
-
A convenience inner class that stores the host and the port associated with a server.
- AuthenticateEngine - Class in edu.isi.pegasus.planner.refiner
-
It authenticates the user with the sites, that the user specifies at the execution time.
- AuthenticateEngine(PegasusBag, Set) - Constructor for class edu.isi.pegasus.planner.refiner.AuthenticateEngine
-
The overloaded constructor.
- authenticateJobManager(String) - Method in class edu.isi.pegasus.planner.refiner.Authenticate
-
It authenticates against the jobmanager specifyied.
- AuthenticateRequest - Class in edu.isi.pegasus.planner.classes
-
The object that describes the authenticate request.
- AuthenticateRequest() - Constructor for class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Default Constructor.
- AuthenticateRequest(char, String, String) - Constructor for class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Overloaded Constructor.
- AuthenticateThread(int) - Constructor for class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
The overloaded constructor.
- authenticationSet() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the authenticate option for the planner.
- auxillary - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
- AVERAGE_BANDWIDTH - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The average bandwidth between the sites.
- AVERAGE_DATA_SIZE_BETWEEN_JOBS - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The average data that is transferred in between 2 jobs in the workflow.
- avg_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- Avg_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- avg_bandwidth_range1 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- Avg_Bandwidth_range1 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- avg_bandwidth_range2 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- Avg_Bandwidth_range2 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- avg_bandwidth_range3 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- Avg_Bandwidth_range3 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- avg_bandwidth_range4 - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- Avg_Bandwidth_range4 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- AVG_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- AVG_BW_RANGE1 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- AVG_BW_RANGE2 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- AVG_BW_RANGE3 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- AVG_BW_RANGE4 - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- AVG_COMPUTE_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the average compute time for the node.
B
- Bag - Interface in edu.isi.pegasus.planner.partitioner.graph
-
An interface to define a BAG of objects.
- balance(int, boolean) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
Run Task redistribution phase of BTS algorithm
- BalancedCluster - Class in edu.isi.pegasus.planner.transfer.refiner
-
An extension of the default refiner, that allows the user to specify the number of transfer nodes per execution site for stagein and stageout.
- BalancedCluster(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The overloaded constructor.
- BalancedCluster.BundleValue - Class in edu.isi.pegasus.planner.transfer.refiner
- BalancedCluster.PoolTransfer - Class in edu.isi.pegasus.planner.transfer.refiner
-
A container to store the transfers that need to be done per staging site The transfers are stored over a collection of Transfer Containers with each transfer container responsible for one transfer job.
- BalancedCluster.TransferContainer - Class in edu.isi.pegasus.planner.transfer.refiner
-
A container class for storing the name of the transfer job, the list of file transfers that the job is responsible for.
- BASE_BUILD_DIRECTORY_URL - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The base directory URL for the builds.
- Basic - Class in edu.isi.pegasus.planner.transfer.refiner
-
The default transfer refiner, that implements the multiple refiner.
- Basic(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Basic
-
The overloaded constructor.
- batch - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- BATCH_KEY - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
The suffix for the property that if set, specifies the size of the chunk in which the implementations handle multiple queries.
- BATCH_QUEUE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The queue to be used when using batch gahp.
- beginWorkflowRefinementStep(Refiner, String, boolean) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- beginWorkflowRefinementStep(Refiner, String, boolean) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
- bestFitBinPack(List<Job>, double) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Perform best fit bin packing.
- bestFitBinPack(List<Job>, int) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Perform best fit bin packing.
- BFS - Class in edu.isi.pegasus.planner.partitioner
-
This does a modified breadth first search of the graph to identify the levels.
- BFS(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.BFS
-
The overloaded constructor.
- BLACK_COLOR - Static variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
- Boolean - Class in edu.isi.pegasus.common.util
-
This class converts a boolean property specification (string) in various representations into a booelan value.
- Boolean() - Constructor for class edu.isi.pegasus.common.util.Boolean
- BooleanBag() - Constructor for class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
The default constructor.
- booleanToInt(boolean) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Returns boolean as an integer
- Boot - Class in edu.isi.pegasus.planner.invocation
-
The boot element.
- Boot() - Constructor for class edu.isi.pegasus.planner.invocation.Boot
-
The default constructor
- Boot(String) - Constructor for class edu.isi.pegasus.planner.invocation.Boot
-
Constructs a piece of data.
- bottomNode - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- bottomUpIterator() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns an iterator that traverses the graph bottom up from the leaves.
- bottomUpIterator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns an iterator that traverses the graph bottom up from the leaves.
- bottomUpIterator() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns an iterator that traverses the graph bottom up from the leaves.
- bottomUpIterator() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns an iterator that traverses the graph bottom up from the leaves.
- BottomUpIterator() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.MapGraph.BottomUpIterator
-
The default constructor.
- Braindump - Class in edu.isi.pegasus.planner.code.generator
-
Braindump file code generator that generates a Braindump file for the executable workflow in the submit directory.
- Braindump() - Constructor for class edu.isi.pegasus.planner.code.generator.Braindump
- BRAINDUMP_FILE - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The basename of the braindump file.
- BTS() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
- buf - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- BUILD_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The classad key for the pegasus build.
- BUILD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Key for the pegasus build.
- buildAncestors() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
build the list of ancestor tasks
- buildDescendants() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
build the list of descendant tasks
- builder - Variable in class edu.isi.pegasus.gridftp.GridFTPConnection.StringBuilderDataSink
- buildState() - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Builds up the remote transfers state for all the sites.
- buildState() - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Builds up the third party state for all the sites.
- buildState(int) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Adds to the existing state table, state information for a particular type of transfers.
- buildState(int) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Adds to the existing state table, state information for a particular type of transfers.
- bulk - Variable in class edu.isi.pegasus.planner.client.TCClient
- Bundle - Class in edu.isi.pegasus.planner.transfer.refiner
-
An extension of the default refiner, that allows the user to specify the number of transfer nodes per execution site for stagein and stageout.
- Bundle(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The overloaded constructor.
- BUNDLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that if set, determines the number of super jobs that are made corresponding to a logical transformation and an execution pool.
- BUNDLE_LOCAL_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the bundling parameter for the local stagein transfer node.
- BUNDLE_LOCAL_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the bundling parameter for the local stagein transfer node.
- BUNDLE_REMOTE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the bundling parameter for the remote stagein transfer node.
- BUNDLE_REMOTE_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the bundling parameter for the remote stagein transfer node.
- BUNDLE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the bundling parameter for the stagein transfer node.
- BUNDLE_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the bundling parameter for the stageout transfer node.
- Bundle.BundleValue - Class in edu.isi.pegasus.planner.transfer.refiner
- Bundle.PoolTransfer - Class in edu.isi.pegasus.planner.transfer.refiner
-
A container to store the transfers that need to be done on a single pool.
- Bundle.TransferContainer - Class in edu.isi.pegasus.planner.transfer.refiner
-
A container class for storing the name of the transfer job, the list of file transfers that the job is responsible for.
- BundleValue() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.BundleValue
-
The default constructor.
- BundleValue() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
The default constructor.
- bypassFirstLevelStagingForInputs() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to bypass first level staging of inputs.
- bypassStagingForInputFile(ReplicaCatalogEntry, PegasusFile, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Returns a boolean indicating whether to bypass first level staging for a file or not
C
- c_action - Static variable in class edu.isi.pegasus.common.util.ProfileParser
-
There are six identified actions.
- c_action - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Contains the actions to perform upon each state transition including transition into self state.
- c_action - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Contains the actions to perform upon each state transition including transition into self state.
- c_cdone - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
- c_count - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
- c_error - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
This message is sent whenever one of the member function is executed which relies on an established database context.
- c_expression - Static variable in class edu.isi.pegasus.common.util.Currently
-
Store the regular expressions necessary to parse ISO timestamps.
- c_final - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Provides the final states and associated messages.
- c_final - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Provides the final states and associated messages.
- c_logger - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServer
- c_logger - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
- c_pattern - Static variable in class edu.isi.pegasus.common.util.Currently
-
Stores compiled patterns at first use, quasi-Singleton.
- c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Prefix for the property subset to use with this catalog.
- c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.SiteCatalog
-
Prefix for the property subset to use with this catalog.
- c_prefix - Static variable in interface edu.isi.pegasus.planner.catalog.WorkCatalog
-
Prefix for the property subset to use with this catalog.
- c_prefix - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
Prefix for the property subset to use with this catalog.
- c_state - Static variable in class edu.isi.pegasus.common.util.ProfileParser
-
Table to contain the state transition diagram for the parser.
- c_state - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Contains the state transition tables.
- c_state - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Contains the state transition tables.
- c_terminate - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServer
- CACHE_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Suffix to be applied for cache file generation.
- CACHE_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Suffix to be applied for cache file generation.
- CACHE_READ_ONLY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the key that disables writing back to the cache file.
- CACHE_REPLICA_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the Replica Catalog Implementer that serves as the source for cache files.
- CACHE_REPLICA_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the source key for Replica Catalog Implementer that serves as cache
- cAction - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
There are five identified actions.
- calculateAverageComputeTime(Job) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Returns the average compute time in seconds for a job.
- calculateEstimatedStartAndFinishTime(GraphNode, String) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Estimates the start and finish time of a job on a site.
- calculateSlotSize() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
- calendar - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- call() - Method in class edu.isi.pegasus.planner.code.generator.SendMetrics
- Callback - Interface in edu.isi.pegasus.planner.parser.dax
-
This interfaces defines the callback calls from DAX parsing.
- Callback - Interface in edu.isi.pegasus.planner.parser.pdax
-
This interfaces defines the callback calls from PDAX parsing.
- Callback - Interface in edu.isi.pegasus.planner.partitioner
-
This interface defines the callback calls from the partitioners.
- canBeCleanedup() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns cleanup denoting whether the file can be cleaned up or not
- canSetXBit() - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Indicates whether the enabling mechanism can set the X bit on the executable on the remote grid site, in addition to launching it on the remote grid stie
- canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Indicates whether the enabling mechanism can set the X bit on the executable on the remote grid site, in addition to launching it on the remote grid site.
- canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Indicates whether the enabling mechanism can set the X bit on the executable on the remote grid site, in addition to launching it on the remote grid stie
- canSetXBit() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Indicates whether the enabling mechanism can set the X bit on the executable on the remote grid site, in addition to launching it on the remote grid stie
- cascadeDeletionUpwards(Graph, List<GraphNode>) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Cascade the deletion of the jobs upwards in the workflow.
- Catalog - Interface in edu.isi.pegasus.planner.catalog
-
This interface create a common ancestor for all cataloging interfaces.
- CATALOG_URL - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- CatalogEntry - Interface in edu.isi.pegasus.planner.catalog.classes
-
This interface create a common ancestor for all catalog entries.
- CatalogException - Exception in edu.isi.pegasus.planner.catalog
-
Class to notify of failures.
- CatalogException() - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
- CatalogException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
-
Constructs a
CatalogException
with the specified detailed message. - CatalogException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
-
Constructs a
CatalogException
with the specified detailed message and a cause. - CatalogException(Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.CatalogException
-
Constructs a
CatalogException
with the specified just a cause. - CatalogType - Class in edu.isi.pegasus.planner.dax
-
Abstract Type for RC and TC Sections of the DAX.
- CatalogType() - Constructor for class edu.isi.pegasus.planner.dax.CatalogType
- CatalogType(CatalogType) - Constructor for class edu.isi.pegasus.planner.dax.CatalogType
-
Copy Constructor
- CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines the category to which the job belongs to.
- categoryRelatedKey(String) - Static method in class edu.isi.pegasus.planner.namespace.Dagman
-
Determines whether a key is category related or not.
- cb_document(Map) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
-
Callback when the opening tag was parsed.
- cb_document(Map) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback when the opening tag was parsed.
- cb_done() - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
- cb_done() - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback when the parsing of the document is done.
- cb_filename(Filename) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
- cb_filename(Filename) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback for the filename from section 1 filenames.
- cb_job(Job) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
- cb_job(Job) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback for the job from section 2 jobs.
- cb_parents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
- cb_parents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
Callback for child and parent relationships from section 3.
- cbCompoundTransformation(CompoundTransformation) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when a compound transformation is encountered in the DAX from Section 3: that lists Transformations that Aggregate executables and Files
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when a compound transformation is encountered in the DAX
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when a compound transformation is encountered in the DAX
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when a compound transformation is encountered in the DAX
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when a compound transformation is encountered in the DAX
- cbCompoundTransformation(CompoundTransformation) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when a compound transformation is encountered in the DAX
- cbDocument(Map) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Callback when the opening tag was parsed.
- cbDocument(Map) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Callback when the opening tag was parsed.
- cbDone() - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when the parsing of the document is done.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when the parsing of the document is done.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback to signal that traversal of the DAX is complete.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
Callback to signal that traversal of the DAX is complete.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when the parsing of the document is done.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback to signal that traversal of the DAX is complete.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when the parsing of the document is done.
- cbDone() - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Callback when the parsing of the document is done.
- cbDone() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Callback when the parsing of the document is done.
- cbDone() - Method in interface edu.isi.pegasus.planner.partitioner.Callback
-
Callback for the partitioner to signal that it is done with the processing.
- cbDone() - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
Callback for the partitioner to signal that it is done with the processing.
- cbDone() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Callback for the partitioner to signal that it is done with the processing.
- cbExecutable(TransformationCatalogEntry) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when a transformation catalog entry is encountered in the DAX from Section 2: Executables that list entries in a Transformaton Catalog
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when a transformation catalog entry is encountered in the DAX
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when a transformation catalog entry is encountered in the DAX
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when a transformation catalog entry is encountered in the DAX
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when a transformation catalog entry is encountered in the DAX
- cbExecutable(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when a transformation catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when a replica catalog entry is encountered in the DAX from Section 1: Files that lists entries in a Replica Catalog
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when a replica catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when a replica catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when a replica catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when a replica catalog entry is encountered in the DAX
- cbFile(ReplicaLocation) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when a replica catalog entry is encountered in the DAX
- cbJob(Job) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback for the job from section 4: Job's, DAX's or Dag's that list a JOB or DAX or DAG .
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback for the job from section 2 jobs.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
This constructs a graph node for the job and ends up storing it in the internal map.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
This constructs a graph node for the job and ends up storing it in the internal map.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback for the job from section 2 jobs.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
This constructs a graph node for the job and ends up storing it in the internal map.
- cbJob(Job) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback for the job from section 2 jobs.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
This updates the internal graph nodes of child with references to it's parents referred to by the list of parents passed.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback for child and parent relationships from section 3.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
This updates the internal graph nodes of child with references to it's parents referred to by the list of parents passed.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback for child and parent relationships from section 3.
- cbParents(String, List) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Callback for child and parent relationships from section 3.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Callback for child and parent relationships from section 3.
- cbParents(String, List) - Method in interface edu.isi.pegasus.planner.partitioner.Callback
-
Callback for when a partitioner determines the relations between partitions that it has previously constructed.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
Callback for when a partitioner determines the relations between partitions that it has previously constructed.
- cbParents(String, List) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Callback for when a partitioner determines the relations between partitions that it has previously constructed.
- cbParents(String, List<PCRelation>) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback for child and parent relationships from Section 5: Dependencies that lists Parent Child relationships (can be empty)
- cbParents(String, List<PCRelation>) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback for child and parentID relationships from section 3.
- cbPartition(Partition) - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Callback for the partition .
- cbPartition(Partition) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Callback for the partition .
- cbPartition(Partition) - Method in interface edu.isi.pegasus.planner.partitioner.Callback
-
Callback for when a partitioner determines that partition has been constructed.
- cbPartition(Partition) - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
Callback for when a partitioner determines that partition has been constructed.
- cbPartition(Partition) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Callback for when a partitioner determines that partition has been constructed.
- cbWfInvoke(Invoke) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Callback when a invoke is encountered in the DAX from the top level inside adag tag.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Callback when a invoke entry is encountered in the top level inside the adag element in DAX.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
- cbWfInvoke(Invoke) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Callback when a invoke entry is encountered in the top level inside the adag element in the DAX.
- Chain - Class in edu.isi.pegasus.planner.transfer.refiner
-
This transfer refiner builds upon the Default Refiner.
- Chain(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain
-
The overloaded constructor.
- CHAIN_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the number of chains of stagein nodes that are to be created per site.
- Chain.SiteTransfer - Class in edu.isi.pegasus.planner.transfer.refiner
-
A container to manage the transfer jobs that are needed to be done on a single site.
- Chain.TransferChain - Class in edu.isi.pegasus.planner.transfer.refiner
-
A shallow container class, that contains the list of the names of the transfer jobs and can return the last job in the list.
- CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key that triggers the kickstart to change directory before launching an executable instead of launching the executable from the directory where kickstart is being run.
- CHANGE_XBIT_TRANSFORMATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The logical name of the transformation that creates directories on the remote execution pools.
- characters(char[], int, int) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- characters(char[], int, int) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method is the callback function for characters in an element.
- characters(char[], int, int) - Method in class edu.isi.pegasus.planner.parser.Parser
-
This is used to store the character data that is in xml.
- CHECK_DB_EXISTS_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
MySQL statement for checking if DB exists
- checkAndSetProperty(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Checks for a property, if it does not exist then sets the property to the value passed
- checkAndTransferIrodsEnvFile(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Deprecated.
- checkAndTransferProxy(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Deprecated.
- checkAndTransferProxy(TransferJob) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Determines if there is a need to transfer proxy for the transfer job or not.
- checkCompatibility(Implementation) - Method in class edu.isi.pegasus.planner.transfer.MultipleFTPerXFERJobRefiner
-
Checks whether the implementation loaded is compatible with the refiner.
- checkFile(String) - Method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
Reads the contents of the specified file, and returns with the remote exit code contained in the job chain.
- checkForCorruption() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Checks the underlying graph structure for any corruption.
- checkID(String) - Static method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Copy Constructor
- checkIfDatabaseExists(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Checks if the given database exists
- checkIn() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
check whether all parent tasks are finished.
- checkIntegrity() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
check all child task's start time is scheduled after the finishtime of this task
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Additional method to handle the Condor namespace with convenience mappings.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
This checks whether the key passed by the user is valid in the current namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
This checks whether the key passed by the user is valid in the current namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Additional method to handle the globus namespace with convenience mappings.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
This checks whether the key passed by the user is valid in the current namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
This checks the whether a key value pair specified is valid in the current namespace or not, and whether it clashes with other key value pairs that might have been set by Pegasus internally.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
This checks whether the key passed by the user is valid in the current namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
This checks whether the key passed by the user is valid in the current namespace or not.
- checkKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
This checks whether the key passed by the user is valid in the current namespace or not.
- checkKeyInNS(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It puts in the namespace specific information from the Transformation Catalog into the namespace.
- checkKeyInNS(Profile) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It takes in a Profiles object and puts them into the namespace after checking if the namespace in the Profile object is same as the namepsace implementation.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(PegasusProperties, String) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
It puts in the namespace specific information specified in the properties file into the namespace.
- checkKeyInNS(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It puts in the namespaces keys from another namespace instance.
- checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
It takes in key=value pairs separated by a ; and puts them into the namespace after checking if they are valid or not.
- checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
It takes in key=value pairs separated by a ; and puts them into the namespace after checking if they are valid or not.
- checkKeyInNS(String) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
It takes in key=value pairs separated by a ; and puts them into the namespace after checking if they are valid or not.
- checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
This checks the whether a key value pair specified is valid in the current namespace or not by calling the checkKey function and then on the basis of the values returned puts them into the associated map in the class.
- checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
This checks the whether a key value pair specified is valid in the current namespace or not by calling the checkKey function and then on the basis of the values returned puts them into the associated map in the class.
- checkKeyInNS(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
This checks the whether a key value pair specified is valid in the current namespace or not by calling the checkKey function and then on the basis of the values returned puts them into the associated map in the class.
- checkKeyInNS(List) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
It takes in a list of profiles and puts them into the namespace after checking if they are valid or not.
- checkLfnPfnMap(long, long) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Checks if a lfn,pfn exist in the map.
- checkProfile(String, String, String, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Checks if a given profile exists
- child - Variable in class edu.isi.pegasus.planner.classes.PCRelation
-
the child making up the parent child relationship pair in a dag
- CHILD_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The atrribute key for child job id.
- CHILD_TASK_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The atrribute key for child task id.
- childrenColored(int) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns if all the children of the node have the color that is specified.
- childrenRepresentation() - Method in class edu.isi.pegasus.planner.partitioner.Topological
-
Returns a map that is index by GraphNode ID's and each value is the list of ID's of children of that GraphNode.
- childrenToString() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
A convenience methods that generates a comma separated list of children as String
- CHMOD_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a chmod job that sets the xbit on the remote end.
- ClassADSGenerator - Class in edu.isi.pegasus.planner.code.generator.condor
-
A helper class, that generates Pegasus specific classads for the jobs.
- ClassADSGenerator() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
- classname - Variable in class edu.isi.pegasus.planner.client.TCClient
- CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The basename of the class that is implmenting this.
- CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The basename of the class that is implmenting this.
- CLASSNAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The basename of the class that is implmenting this.
- cleanup - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
- Cleanup - Class in edu.isi.pegasus.planner.refiner.cleanup
-
Uses pegasus-cleanup to do removal of the files on the remote sites.
- Cleanup() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The default constructor.
- CLEANUP_BIT_FLAG - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
If set, means can be considered for cleanup
- CLEANUP_DAG_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The prefix that is attached to the name of the dag for which the cleanup Dag is being generated, to generate the name of the cleanup Dag.
- CLEANUP_DIR - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The basename of the directory that contains the submit files for the cleanup DAG that for the concrete dag generated for the workflow.
- CLEANUP_DIR - Static variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The basename of the directory that contains the submit files for the cleanup DAG that for the concrete dag generated for the workflow.
- CLEANUP_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a cleanup job, that removes the files that from the remote working directories of the remote sites.
- CLEANUP_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The prefix for CLEANUP_JOB ID i.e prefix+the parent compute_job ID becomes ID of the cleanup job.
- CLEANUP_OPTIONS() - Constructor for enum edu.isi.pegasus.planner.classes.PlannerOptions.CLEANUP_OPTIONS
- CLEANUP_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Constant suffix for the names of the deployment nodes.
- CLEANUP_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Constant suffix for the names of the deployment nodes.
- CLEANUP_SCOPE() - Constructor for enum edu.isi.pegasus.planner.common.PegasusProperties.CLEANUP_SCOPE
- CleanupEngine - Class in edu.isi.pegasus.planner.refiner
-
The refiner that results in the creation of cleanup jobs within the workflow.
- CleanupEngine(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.CleanupEngine
-
The overloaded constructor.
- CleanupFactory - Class in edu.isi.pegasus.planner.refiner.cleanup
-
A factory class to load the appropriate type of Code Generator.
- CleanupFactory() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory
- CleanupFactoryException - Exception in edu.isi.pegasus.planner.refiner.cleanup
-
Class to notify of failures while instantiating Cleanup Strategy and Implementation classes.
- CleanupFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
Constructs a
CleanupFactoryException
with no detail message. - CleanupFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
Constructs a
CleanupFactoryException
with the specified detailed message. - CleanupFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
Constructs a
CleanupFactoryException
with the specified detailed message and a cause. - CleanupFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
Constructs a
CleanupFactoryException
with the specified detailed message and a cause. - CleanupImplementation - Interface in edu.isi.pegasus.planner.refiner.cleanup
-
The interface that defines how the cleanup job is invoked and created.
- CleanupJobContent - Class in edu.isi.pegasus.planner.refiner.cleanup
-
A container class that is used to hold the contents for a cleanup job
- CleanupJobContent(GraphNode, List<PegasusFile>) - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.CleanupJobContent
- CleanupStrategy - Interface in edu.isi.pegasus.planner.refiner.cleanup
-
The interface that defines how the cleanup job is invoked and created.
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Removes everything.
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Removes everything.
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Removes everything from the catalogs.
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Removes everything.
- clear() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Removes everything.
- clear() - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Removes everything.
- clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Clears all the entries in the store.
- clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Deletes the entire transformation catalog.
- clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Deletes the entire transformation catalog.
- clear() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Deletes the entire transformation catalog.
- clear() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Deletes the entire transformation catalog.
- clear() - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Clears the internal state.
- clear() - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
-
Clears the internal state.
- clearAliases() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Clears the aliases associates with the replica catalog.
- client - Variable in class edu.isi.pegasus.gridftp.GridFTPConnection
- Client - Class in edu.isi.pegasus.planner.catalog.transformation.client
- Client() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.Client
- clone() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Directory
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Return a copy of this Sysinfo object
- clone() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
creates a new instance of this object and returns you it.
- clone() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns a clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Returns a copy of this object
- clone() - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
returns a new copy of the Object
- clone() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns a copy of the existing data object.
- clone() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns a copy of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.classes.TransferJob
-
Returns a new copy of the Object.
- clone() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.dax.Edge
- clone() - Method in class edu.isi.pegasus.planner.dax.File
-
Return a clone of this File
- clone() - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Create a copy of this Invoke object
- clone() - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Create a copy of this Metdata Object
- clone() - Method in class edu.isi.pegasus.planner.dax.Profile
-
Create a copy of this Profile
- clone() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Returns a copy of the current namespace object
- clone() - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns the clone of the object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns a copy of the current namespace object
- clone() - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Returns a copy of the current namespace object.
- clone() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns a copy of the object.
- clone() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns a copy of the object.
- clone() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns a copy of the object
- clone() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Returns a copy of this object.
- cloneRCE(ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
- cloneSet(Set) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Clones a Set.
- close() - Method in class edu.isi.pegasus.common.util.StreamGobbler
-
Closes the underneath input and output stream that were opened.
- close() - Method in class edu.isi.pegasus.common.util.XMLWriter
- close() - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
Close the connection
- close() - Method in class edu.isi.pegasus.gridftp.GridFTPConnection.StringBuilderDataSink
- close() - Method in interface edu.isi.pegasus.planner.catalog.Catalog
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
This operation will dump the in-memory representation back onto disk.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
This operation will dump the in-memory representation back onto disk.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
This operation will dump the in-memory representation back onto disk.
- close() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
This operation will dump the in-memory representation back onto disk.
- close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Closes the connection.
- close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Close the connection to backend file.
- close() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Close the connection to backend file.
- close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
- close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
- close() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Closes the connection to the back end.
- close() - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.classes.PlannerCache
-
Explicitely free resources before the garbage collection hits.
- close() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Frees resources taken by the instance of the replica catalog.
- close() - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
Close the write handle to the file that is written.
- close() - Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
Close the xml file that is written.
- close() - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Explicitely free resources before the garbage collection hits.
- CLOSE_COMMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
- CLOSE_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
- CLOSE_EMPTY_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
- CloseBrace - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to convey a closed brace, no token value necessary.
- CloseBrace() - Constructor for class edu.isi.pegasus.planner.parser.tokens.CloseBrace
- closeConnection() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
To close the connection to replica services.
- closeElement() - Method in class edu.isi.pegasus.common.util.XMLWriter
-
Close open elements start tag.
- closeElement(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
Generates a closing tag for an element
- CloseParanthesis - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to convey a closed paranthesis, no token value necessary.
- CloseParanthesis() - Constructor for class edu.isi.pegasus.planner.parser.tokens.CloseParanthesis
-
Default Constructor
- cluster - Variable in class edu.isi.pegasus.planner.provisioner.Node
- cluster(ADag) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
Clusters the jobs in the workflow.
- cluster(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
Clusters the jobs in the workflow.
- Cluster - Class in edu.isi.pegasus.planner.transfer.refiner
-
A cluster refiner that builds upon the Bundle Refiner.
- Cluster(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The overloaded constructor.
- CLUSTER_ARGUMENTS - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
Arguments that need to be passed to the clustering executable.
- CLUSTER_LOCAL_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the cluster parameter for the local stagein transfer node.
- CLUSTER_LOCAL_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the cluster parameter for the local stagein transfer node.
- CLUSTER_REMOTE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the clustering parameter for the stagein transfer node.
- CLUSTER_REMOTE_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the bundling parameter for the remote stagein transfer node.
- CLUSTER_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the clustering parameter for the stagein transfer node.
- CLUSTER_STAGE_OUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the clustering parameter for the stageout transfer node.
- clusterCleanupGraphNodes(List<GraphNode>, HashMap, String, int) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Takes in a list of cleanup nodes ,one per cleanupNode(compute/stageout job) whose files need to be deleted) and clusters them into a smaller set of cleanup nodes.
- CLUSTERED_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The prefix that is assigned to the jobname of the collapsed jobs to get the jobname for the fat job.
- clusteredJob(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the job corresponding to a partition.
- clusteredJob(String) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the job corresponding to a partition.
- Clusterer - Interface in edu.isi.pegasus.planner.cluster
-
The clustering API, that constructs clusters of jobs out of a single partition.
- ClustererCallback - Class in edu.isi.pegasus.planner.partitioner
-
A Callback implementation that passes the partitions detected during the partitioning of the worflow to a Clusterer for clustering.
- ClustererCallback() - Constructor for class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
The default constructor.
- ClustererException - Exception in edu.isi.pegasus.planner.cluster
-
The baseclass of the exception that is thrown by all Clusterers.
- ClustererException() - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException
-
Constructs a
ClustererException
with no detail message. - ClustererException(String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException
-
Constructs a
ClustererException
with the specified detailed message. - ClustererException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException
-
Constructs a
ClustererException
with the specified detailed message and a cause. - ClustererException(Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererException
-
Constructs a
ClustererException
with the specified just a cause. - ClustererFactory - Class in edu.isi.pegasus.planner.cluster
-
A factory class to load the appropriate Partitioner, and Clusterer Callback for clustering.
- ClustererFactory() - Constructor for class edu.isi.pegasus.planner.cluster.ClustererFactory
- ClustererFactoryException - Exception in edu.isi.pegasus.planner.cluster
-
Class to notify of failures while instantiating Clusterer implementations.
- ClustererFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
Constructs a
ClustererFactoryException
with no detail message. - ClustererFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
Constructs a
ClustererFactoryException
with the specified detailed message. - ClustererFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
Constructs a
ClustererFactoryException
with the specified detailed message and a cause. - ClustererFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
Constructs a
ClustererFactoryException
with the specified detailed message and a cause. - clustererTable() - Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
Returns a table that maps, the clustering technique to an appropriate class implementing that clustering technique.
- clusteringOf(String, List) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- clusteringOf(String, List) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
clusteringOf
- CODE_GENERATOR_CLASS - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The SubmitWriter that has to be loaded for now.
- CodeGenerator - Interface in edu.isi.pegasus.planner.code
-
The interface that allows us to plug in various code generators for writing out the concrete plan.
- CodeGeneratorException - Exception in edu.isi.pegasus.planner.code
-
The baseclass of the exception that is thrown by all Code Generators.
- CodeGeneratorException() - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException
-
Constructs a
CodeGeneratorException
with no detail message. - CodeGeneratorException(String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException
-
Constructs a
CodeGeneratorException
with the specified detailed message. - CodeGeneratorException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException
-
Constructs a
CodeGeneratorException
with the specified detailed message and a cause. - CodeGeneratorException(Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorException
-
Constructs a
CodeGeneratorException
with the specified just a cause. - CodeGeneratorFactory - Class in edu.isi.pegasus.planner.code
-
A factory class to load the appropriate type of Code Generator.
- CodeGeneratorFactory() - Constructor for class edu.isi.pegasus.planner.code.CodeGeneratorFactory
- CodeGeneratorFactoryException - Exception in edu.isi.pegasus.planner.code
-
Class to notify of failures while instantiating Code Generator implementations.
- CodeGeneratorFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
Constructs a
CodeGeneratorFactoryException
with no detail message. - CodeGeneratorFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
Constructs a
CodeGeneratorFactoryException
with the specified detailed message. - CodeGeneratorFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
Constructs a
CodeGeneratorFactoryException
with the specified detailed message and a cause. - CodeGeneratorFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
Constructs a
CodeGeneratorFactoryException
with the specified detailed message and a cause. - COLLAPSE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that if set in the Pegasus namespace determines the number of jobs that are collapsed into the super job.
- COLLAPSE_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
The logical name of the transformation that is able to run multiple jobs via mpi.
- COLLAPSE_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
The logical name of the transformation that is able to run multiple jobs sequentially.
- collapseJobs(String, List, String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Collapses the jobs having the same logical name according to the sites where they are scheduled.
- COLLAPSER_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
Deprecated.
- COLLECT_METRICS_ENV_VARIABLE - Static variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The name of the environment variable that sets whether to collect metrics or not
- COLLECTOR_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The key that designates the collector associated with the job
- COLLECTOR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The key that designates the collector associated with the job.
- columnLength(String[], int[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Computes the maximum column lenght for pretty printing.
- columnLength(String[], int[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Computes the maximum column lenght for pretty printing.
- combine(Profiles) - Static method in class edu.isi.pegasus.common.util.ProfileParser
-
Creates a profile string from the internal representation.
- combine(String, int) - Method in class edu.isi.pegasus.planner.refiner.Authenticate
-
A small helper method that returns the standard host and port combination to be used for logging purposes.
- combine(String, String, String) - Static method in class edu.isi.pegasus.common.util.Separator
-
Combines the three components that constitute a fully-qualified definition identifier into a single string.
- combine(String, String, String) - Static method in class edu.isi.pegasus.planner.classes.Job
-
Combines the three components together into a single string as namespace-name-version.
- combine(String, String, String, String) - Static method in class edu.isi.pegasus.common.util.Separator
-
Combines the four components that reference a fully-qualified definition identifier into a single string.
- combine(List) - Static method in class edu.isi.pegasus.common.util.ProfileParser
-
Creates a profile string from the internal representation.
- Command - Class in edu.isi.pegasus.gridftp
- Command() - Constructor for class edu.isi.pegasus.gridftp.Command
- CommandLine - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
- CommandLine() - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- CommandLine(String) - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine
-
Constructs an applications without arguments.
- CommandLine(String, String) - Constructor for class edu.isi.pegasus.planner.invocation.CommandLine
-
Constructs an applications with arguments.
- commandLineOpts - Variable in class edu.isi.pegasus.planner.client.Executable
-
The command line options passed to the executable
- CommonProperties - Class in edu.isi.pegasus.common.util
-
This class creates a common interface to handle package properties.
- CommonProperties(String) - Constructor for class edu.isi.pegasus.common.util.CommonProperties
-
ctor.
- compare(Node, Node) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram.NodeComp
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery.LFNComparator
-
Compares this object with the specified object for order.
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.cluster.Horizontal.JobComparator
-
Compares this object with the specified object for order.
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal.GraphNodeComparator
-
Compares this object with the specified object for order.
- compare(Object, Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftGraphNodeComparator
-
Implementation of the
Comparable
interface. - compareTo(FileInfo) - Method in class edu.isi.pegasus.gridftp.FileInfo
- compareTo(Object) - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Implementation of the
Comparable
interface. - compareTo(Object) - Method in class edu.isi.pegasus.planner.classes.PCRelation
- compareTo(Object) - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Implementation of the
Comparable
interface. - compareTo(Object) - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Compares the Rank object with another rank object.
- complain(Directory.TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Throws a Runtime Exception
- complain(String, GraphNode, GraphNode) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Convenience method to complain for a linked node from a node that does not exist in the DAG
- complain(String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Complains for invalid values passed in profiles
- complain(String, String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Small helper method to bundle repetitive complaints in a template for reporting progress.
- complain(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
This is called when an attribute is encountered for an element that is invalid from the schema context and is not supported.
- complainForCredential(Job, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Complain if a particular credential key is not found for a site
- complainForHeadNodeFileServer(String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Complains for a missing head node file server on a site for a job
- complainForHeadNodeURLPrefix(Job, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Complains for head node url prefix not specified
- complainForHeadNodeURLPrefix(String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Complains for head node url prefix not specified
- complainForHeadNodeURLPrefix(String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Complains for head node url prefix not specified
- complainForHeadNodeURLPrefix(String, String, FileServerType.OPERATION, Job) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Complains for head node url prefix not specified
- complainForScratchFileServer(Job, FileServerType.OPERATION, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Complains for a missing head node file server on a site for a job
- complainForScratchFileServer(String, FileServerType.OPERATION, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Complains for a missing head node file server on a site for a job
- complainForStorageFileServer(FileServerType.OPERATION, String) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Complains for a missing head node storage file server on a site for a job
- complete - Variable in class edu.isi.pegasus.planner.provisioner.Edge
- COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The complete TC name for kickstart.
- COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The complete TC name for kickstart.
- COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The complete TC name for dirmanager.
- COMPLETE_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The complete TC name for pegasus worker package.
- COMPLETE_UNTAR_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The complete TC name for untar.
- CompoundTransformation - Class in edu.isi.pegasus.planner.classes
-
A data class to contain compound transformations.
- CompoundTransformation(String) - Constructor for class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Constructor
- CompoundTransformation(String, String, String) - Constructor for class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Overloaded Constructor
- compTime - Variable in class edu.isi.pegasus.planner.provisioner.Edge
- compute - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
- compute(String, String, String) - Method in interface edu.isi.pegasus.planner.namespace.aggregator.Aggregator
-
Do the aggregation function on the profile values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.MAX
-
Returns the maximum of two values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.MIN
-
Returns the minimum of two values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.Sum
-
Sums up the values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.UniqueMerge
-
Sums up the values.
- compute(String, String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.Update
-
Returns the minimum of two values.
- COMPUTE_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a compute job.
- computeDownwardRank(GraphNode) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Computes the downward rank of a node.
- computeRuntime() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the runtime associated with the job.
- concreteDagEmpty(String, ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
A callout method that dictates what needs to be done in case the concrete plan that is generated is empty.
- ConditionVariable() - Constructor for class edu.isi.pegasus.planner.refiner.ThreadPool.ConditionVariable
-
The default constructor.
- condor - edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- condor - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- condor - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- Condor - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Enables a job to be directly submitted to the condor pool of which the submit host is a part of.
- Condor - Class in edu.isi.pegasus.planner.namespace
-
This helper class helps in handling the arguments specified in the Condor namespace by the user either through dax or through profiles in pool.
- Condor - Class in edu.isi.pegasus.planner.transfer.sls
-
This uses the Condor File Transfer mechanism for the second level staging.
- Condor - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
- Condor() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The default constructor.
- Condor() - Constructor for class edu.isi.pegasus.planner.namespace.Condor
-
The default constructor.
- Condor() - Constructor for class edu.isi.pegasus.planner.transfer.sls.Condor
-
The default constructor.
- Condor(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Condor
-
The overloaded constructor
- CONDOR - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- CONDOR - Static variable in class edu.isi.pegasus.planner.classes.Profile
- CONDOR_CODE_GENERATOR_CLASS - Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
The name of the class implementing the condor code generator.
- CONDOR_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the condor configuration.
- CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The logical name with which to query the transformation catalog for the condor_dagman executable, that ends up running the mini dag as one job.
- CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The logical name with which to query the transformation catalog for the condor_dagman executable, that ends up running the mini dag as one job.
- CONDOR_DAGMAN_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The logical name with which to query the transformation catalog for the condor_dagman executable, that ends up running the mini dag as one job.
- CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The namespace to use for condor dagman.
- CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The namespace to use for condor dagman.
- CONDOR_DAGMAN_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The namespace to use for condor dagman.
- CONDOR_KICKSTART - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- CONDOR_REMOTE_DIRECTORY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
The Condor remote directory classad key to be used with Glite
- CONDOR_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a vanilla condor execution.
- CONDOR_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the Condor Style.
- CONDOR_VERSION_COMMAND - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
The condor version command to be executed.
- CondorC - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Enables a job to be directly submitted to the condor pool of which the submit host is a part of.
- CondorC() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The default constructor.
- CONDORC_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a CondorC submission to remote schedds.
- CONDORC_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the CondorC Style.
- CondorG - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
This implementation enables a job to be submitted via CondorG to remote grid sites.
- CondorG() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorG
-
The default Constructor.
- CondorGenerator - Class in edu.isi.pegasus.planner.code.generator.condor
-
This class generates the condor submit files for the DAG which has to be submitted to the Condor DagMan.
- CondorGenerator() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default constructor.
- CondorGlideIN - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Enables a job to be submitted to nodes that are logically part of the local pool, but physically are not.
- CondorGlideIN() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN
-
The default constructor.
- CondorGlideinWMS - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Jobs targeting glidinWMS pools.
- CondorGlideinWMS() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS
-
The default constructor.
- CondorQuoteParser - Class in edu.isi.pegasus.planner.code.generator.condor
-
A utility class to correctly quote arguments strings before handing over to Condor.
- CondorQuoteParser() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
- CondorQuoteParserException - Exception in edu.isi.pegasus.planner.code.generator.condor
-
This class is used to signal errors while parsing argument strings for Condor Quoting.
- CondorQuoteParserException(String, int) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException
-
The overloaded constructor
- CondorQuoteParserException(String, int, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException
-
The overloaded constructor
- CondorStyle - Interface in edu.isi.pegasus.planner.code.generator.condor
-
An interface to allow us to apply different execution styles to a job via Condor DAGMAN.
- CondorStyleException - Exception in edu.isi.pegasus.planner.code.generator.condor
-
A specific exception for the Condor Style generators.
- CondorStyleException() - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException
-
Constructs a
CondorStyleException
with no detail message. - CondorStyleException(String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException
-
Constructs a
CondorStyleException
with the specified detailed message. - CondorStyleException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException
-
Constructs a
CondorStyleException
with the specified detailed message and a cause. - CondorStyleException(Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleException
-
Constructs a
CondorStyleException
with the specified just a cause. - CondorStyleFactory - Class in edu.isi.pegasus.planner.code.generator.condor
-
A factory class to load the appropriate type of Condor Style impelementations.
- CondorStyleFactory() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The default constructor.
- CondorStyleFactoryException - Exception in edu.isi.pegasus.planner.code.generator.condor
-
Class to notify of failures while instantiating Condor Style implementations.
- CondorStyleFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
Constructs a
CondorStyleFactoryException
with no detail message. - CondorStyleFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
Constructs a
CondorStyleFactoryException
with the specified detailed message. - CondorStyleFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
Constructs a
CondorStyleFactoryException
with the specified detailed message and a cause. - CondorStyleFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
Constructs a
CondorStyleFactoryException
with the specified detailed message and a cause. - condorUniverse - Variable in class edu.isi.pegasus.planner.classes.Job
-
The universe in which the job has to be executed.
- condorVariables - Variable in class edu.isi.pegasus.planner.classes.Job
-
For Condor Namespace.
- CondorVersion - Class in edu.isi.pegasus.common.util
-
A utility class that allows us to determine condor version.
- CondorVersion(LogManager) - Constructor for class edu.isi.pegasus.common.util.CondorVersion
-
The default constructor.
- CondorVersion.CondorVersionCallback - Class in edu.isi.pegasus.common.util
-
An inner class, that implements the StreamGobblerCallback to determine the version of Condor being used.
- CondorVersionCallback() - Constructor for class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback
-
The Default Constructor
- CONFIG_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a CONFIG message.
- CONFIG_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a CONFIG message.
- CONFIGURED_TEMPLATES_Q - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- ConfigXmlParser - Class in edu.isi.pegasus.planner.parser
-
This is the parsing class, used to parse the pool config file in xml format.
- ConfigXmlParser(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Default Class Constructor.
- ConfigXmlParser(String, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Class Constructor intializes the parser and turns on validation.
- connect(GridFTPURL) - Method in class edu.isi.pegasus.gridftp.Command
- connect(PegasusProperties) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Connects the interface with the replica catalog implementation.
- connect(PegasusProperties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
A convenience method to connect on the basis of PegasusProperties.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Does the file listing on the directory to create the mappings in memory.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Opens the file for writing.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Reads the on-disk map file into memory.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Reads the on-disk map file into memory.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Initializes the Site Catalog Parser instance for the file.
- connect(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Initializes the Site Catalog Parser instance for the file.
- connect(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Connects to the database.
- connect(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Connects to the database.
- connect(String, Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Connects to an individual replica catalog.
- connect(Properties) - Method in interface edu.isi.pegasus.planner.catalog.Catalog
-
Establishes a link between the implementation and the thing the implementation is build upon.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Establishes a connection to the database from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Establishes a connection to the database from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Establishes a connection to the database from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Establishes a link between the implementation and the thing the implementation is build upon.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Establishes a connection to the database from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Establishes a connection to the database from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Issues the condor status command, and stores the results retrieved back into a List.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Establishes a connection to the file from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Establishes a connection to the file from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Empty for the time being.
- connect(Properties) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Establishes a connection to the database from the properties.
- connect(Properties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Establishes a connection to the database from the properties.
- Connection - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes a connection property for replica catalog.
- Connection() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
The default constructor.
- Connection(String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
The overloaded constructor.
- connectionCache - Variable in class edu.isi.pegasus.gridftp.Command
- connectMds() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Create and return a MDS LdapContext.
- CONSOLE_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a CONSOLE error message.
- CONSOLE_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a CONSOLE message.
- constituentJobsIterator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns an iterator to the constituent jobs of the AggregatedJob.
- construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
- construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
- construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
- construct(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
- construct(Job, String) - Method in interface edu.isi.pegasus.planner.code.POSTScript
-
Constructs the postscript that has to be invoked on the submit host after the job has executed on the remote end.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Constructs a condor variable in the condor profile namespace associated with the job.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Constructs a condor variable in the condor profile namespace associated with the constituentJob.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Constructs a condor variable in the condor profile namespace associated with the job.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Constructs a condor variable in the condor profile namespace associated with the job.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
Constructs a condor variable in the condor profile namespace associated with the job.
- construct(Job, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Constructs a condor variable in the condor profile namespace associated with the job.
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Constructs a new element of the format (key=value).
- construct(String, String) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Constructs a new element of the format (key=value).
- constructAbstractAggregatedJob(List, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Constructs a new aggregated job that contains all the jobs passed to it.
- constructAbstractAggregatedJob(List, String, String) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Constructs an abstract aggregated job that has a handle to the appropriate JobAggregator that will be used to aggregate the jobs.
- constructAbstractAggregatedJob(List, String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Constructs an abstract aggregated job that has a handle to the appropriate JobAggregator that will be used to aggregate the jobs.
- constructCleanupJob(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Constructs a kickstart setup constituentJob
- constructClusteredJobID(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the ID for the clustered job corresponding to a partition.
- constructClusteredJobID(Partition) - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Returns the ID for the clustered job corresponding to a partition.
- constructCondorKey(Job, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Constructs a condor variable in the condor profile namespace associated with the job.
- constructDAGJob(Job, File, File, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs a job that plans and submits the partitioned workflow, referred to by a Partition.
- constructDAGJob(Partition, File, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Constructs a job that plans and submits the partitioned workflow, referred to by a Partition.
- constructDAGJob(String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Constructs a job that plans and submits the partitioned workflow, referred to by a Partition.
- constructDAGManKnobs(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs Any extra arguments that need to be passed to dagman, as determined from the properties file.
- constructDAGManKnobs(PegasusProperties) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Constructs Any extra arguments that need to be passed to dagman, as determined from the properties file.
- constructDefaultURLToPegasusWorkerPackage(String, SysInfo) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Constructs the default URL's for the pegasus worker package.
- constructFileKey(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Constructs the key for an entry to the file table.
- constructFileTX(PegasusFile, Job, String, String, boolean) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Constructs the FileTransfer object on the basis of the transiency information.
- constructGridResource(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
Constructs the grid_resource entry for the job.
- constructGridResource(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.CreamCE
-
Constructs the grid_resource entry for the job.
- constructGridResource(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.SSH
-
Constructs the grid_resource entry for the job.
- constructID(String, int) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Given an integer id, returns a string id that is used for the clustered job.
- constructJobID(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Returns the id for a job
- constructLevelRelations(Callback, int, int) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Calls out to the callback with appropriate relations between the partitions constructed for the levels.
- constructLevelRelations(Callback, int, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Calls out to the callback with appropriate relations between the partitions constructed for the levels.
- constructMap(String) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Constructs a map with the numbers/values for the collapsing factors to collapse the nodes of same type.
- constructMap(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Constructs a map with the numbers/values to be passed in the RSL handle for certain pools.
- constructPartition() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It while looking at the node list constructs the relations between the jobs in the partition, that can be gotten through getRelationsInPartition().
- constructPartitionName(String, boolean) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It constructs the partition name given the daxName.
- constructPartitions(Callback, List, int) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Given a list of jobs, constructs (one or more) partitions out of it.
- constructPartitions(Callback, List, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Given a list of jobs, constructs (one or more) partitions out of it.
- constructPartitions(Callback, List, int, String) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Given a list of jobs, constructs (one or more) partitions out of it.
- constructPegasusPlanPrescript(Job, PlannerOptions, String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs the pegasus plan prescript for the subdax
- constructPlannerPrescriptWrapper(Job, File, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Construct a pegasus plan wrapper script that changes the directory in which pegasus-plan is launched.
- constructPREJob(Job, String, String, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Constructs the prejob that fetches sls file, and then invokes transfer again.
- constructRegistrationURL(String, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Constructs a Registration URL for a LFN
- constructSetupJob(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Constructs a kickstart setup constituentJob
- constructSiteCatalog(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
Generates a sample site catalog.
- constructSiteToSRMServerMap(PegasusProperties) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Constructs a Properties objects by parsing the relevant SRM pegasus properties.
- constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a transformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvironment() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromEnvProfiles(ENV) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns a tranformation catalog entry object constructed from the environment An entry is constructed if either of the following environment variables are defined 1) CONDOR_HOME 2) CONDOR_LOCATION CONDOR_HOME takes precedence over CONDOR_LOCATION
- constructTCEntryFromJobHints(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Constructs a TC entry object from the contents of a job.
- constructTCEntryFromPath() - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a tranformation catalog entry object constructed from the path environment variable
- constructTransformationCatalogEntryForDAGMan(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs TransformationCatalogEntry for DAGMan.
- constructURL(FileServer, String) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Returns the full path on remote output site, where the lfn will reside, using the FileServer passed.
- contains(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns boolean indicating whether the store has a SiteCatalogEntry matching a handle.
- contains(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Returns a boolean indicating if an entry for a Site with a particular id exists or not.
- containsAbstractJob(AbstractJob) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if an abstractjob exists in the DAX
- containsAbstractJobId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a jobid exists in the DAX
- containsDAG(DAG) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a DAG job exists in the DAX
- containsDAGId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a DAG job id exists in the DAX
- containsDAX(DAX) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a DAX job exists in the DAX
- containsDAXId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a DAX job id exists in the DAX
- containsExecutable(Executable) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Checks if a given executable exists in the DAX based Transformation Catalog
- containsJob(Job) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a job exists in the DAX
- containsJobId(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Check if a jobid exists in the DAX
- containsKey(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
Returns false.
- containsKey(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
Returns true if the namespace contains a mapping for the specified key.
- containsKey(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns whether there is an entry for a particular site or not.
- containsKey(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns whether there is an entry for a particular site or not.
- containsLFN(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns a boolean indicating whether the store has a mapping for a particular LFN or not.
- containsTransformation(Transformation) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Checks if a given Transformation exists in the DAX based Transformation Catalog
- containsTransformation(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns a boolean indicating whether the store contains an entry corresponding to a particular transformation or not.
- containsTransformation(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns a boolean indicating whether the store contains an entry corresponding to a particular transformation or not.
- convert(SiteCatalogEntry) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.Adapter
-
An adapter method that converts the
SiteCatalogEntry
object toSiteCatalogEntry3
object. - convert(SiteCatalogEntry3) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.Adapter
-
An adapter method that converts the
SiteCatalogEntry3
object toSiteCatalogEntry
object. - convert(SiteInfo) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry
-
An adapter method that converts the
SiteInfo
object toSiteCatalogEntry
object. - convert(SiteInfo, LogManager) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry
-
An adapter method that converts the
SiteInfo
object toSiteCatalogEntry
object. - convert(String, String) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Convert a VDS Properties file to Pegasus properties.
- convert(Map) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Converts a map with RSL kv-pairs into an RSL string.
- convertException() - Method in exception edu.isi.pegasus.common.util.FactoryException
-
Converts most of the common instantiation exceptions from the class loader into an error message.
- convertException(int) - Method in exception edu.isi.pegasus.common.util.FactoryException
-
Converts most of the common instantiation exceptions from the class loader into an error message.
- convertException(Exception) - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Converts an exception from the class loader into an error message.
- convertException(Exception) - Static method in class edu.isi.pegasus.planner.client.Executable
-
Returns an error message that chains all the lower order error messages that might have been thrown.
- convertException(Exception, int) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
Returns an error message that chains all the lower order error messages that might have been thrown.
- convertException(Exception, int) - Static method in class edu.isi.pegasus.planner.client.Executable
-
Returns an error message that chains all the lower order error messages that might have been thrown.
- convertException(String, Exception) - Static method in class edu.isi.pegasus.common.util.DynamicLoader
-
Converts an exception from the class loader into an error message.
- convertException(String, Throwable, int) - Static method in exception edu.isi.pegasus.common.util.FactoryException
-
Converts most of the common instantiation exceptions from the class loader into an error message.
- convertExceptionToString(String, Throwable) - Static method in class edu.isi.pegasus.common.util.DynamicLoader
-
Converts an exception from the class loader into an error message.
- convertExecutableToTCE(Executable) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Converts the executable into transformation catalog entries
- convertTC() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Converts transformation catalog from one format to another
- convertTCEntryFrom(List<String>, String) - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Parses the input files in the input format and returns the output as a TransformationStore instance
- convertTCEntryTo(TransformationStore, String, String) - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Converts Transformation store to the given output format.
- convertToList(Set) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Converts a Set to a List.
- convertToList(Vector) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Converts a Vector to a List.
- convertToSiteInfo(SiteCatalogGenerator.Site) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
An adapter method that converts the Site object to the SiteInfo object corresponding to the site catalog schema version 2.
- convertToTransferInputFormat(Collection<FileTransfer>) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Convers the collection of files into an input format suitable for the transfer executable
- CORES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The key for the number of cores for the multiplier factor in stampede.
- CORES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The number of cores that are associated with the job.
- cost - Variable in class edu.isi.pegasus.planner.provisioner.Edge
- CPlanner - Class in edu.isi.pegasus.planner.client
-
This is the main program for the Pegasus.
- CPlanner() - Constructor for class edu.isi.pegasus.planner.client.CPlanner
-
Default constructor.
- CPlanner(LogManager) - Constructor for class edu.isi.pegasus.planner.client.CPlanner
-
The overload constructor.
- CPLANNER_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The logical name with which to query the transformation catalog for cPlanner executable.
- CPLANNER_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The logical name with which to query the transformation catalog for cPlanner executable.
- CPU - Class in edu.isi.pegasus.planner.invocation
-
The CPU element.
- CPU() - Constructor for class edu.isi.pegasus.planner.invocation.CPU
-
The default constructor
- CPU(String) - Constructor for class edu.isi.pegasus.planner.invocation.CPU
-
Constructs a piece of data.
- cream - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- CreamCE - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Enables a job to be directly submitted to a remote CREAM CE front end The CREAM CE support in Condor is documented at the following link
- CreamCE() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.CreamCE
-
The default constructor.
- CREAMCE_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a creamce submission
- CREAMCE_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the CREAMCE Style.
- CREATE_AND_CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key that triggers the kickstart to create and then the working directory to it before launching an executable.
- CREATE_DATABASE_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
MySQL statement for checking for creating database
- CREATE_DIR_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that creates directories at the remote pools.
- CREATE_DIR_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Constant prefix for the names of the create directory nodes.
- CREATE_DIR_SUFFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Constant suffix for the names of the create directory nodes.
- createAndGetAddOn(String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Returns the addOn part that is retrieved from the File Factory.
- createAndGetAddOn(String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Flat
-
Returns the addOn part that is retrieved from the File Factory.
- createAndGetAddOn(String, String, boolean) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
Returns the addOn part that is retrieved from the File Factory.
- createCleanupJob(String, List, Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Creates a cleanup job that removes the files from remote working directory.
- createCleanupJob(String, List, Job) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupImplementation
-
Creates a cleanup job that removes the files from remote working directory.
- createCleanupJob(String, List, Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Creates a cleanup job that removes the files from remote working directory.
- createClusteredCleanupGraphNode(List<GraphNode>, HashMap, String, int, int) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Creates a clustered cleanup graph node that aggregates multiple cleanup nodes into one node
- createDatabase(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Creates data base
- CreateDirectory - Class in edu.isi.pegasus.planner.refiner
-
This common interface that identifies the basic functions that need to be implemented to introduce random directories in which the jobs are executed on the remote execution pools.
- CreateDirectory(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.CreateDirectory
-
A pratically nothing constructor !
- createEndLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates a log message that connects the parent entities with the children.
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates a log message that connects the parent entities with the children.
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates a log message that connects the parent entities with the children.
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates a log message that connects the parent entities with the children.
- createEntityHierarchyMessage(String, String, String, Collection<String>) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates a log message that connects the parent entities with the children.
- createHeadNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
Creates an object describing the head node filesystem.
- createIdHierarchyLogMsg(String, String, String, Iterator<String>) - Static method in class edu.isi.ikcap.workflows.util.logging.LogEvent
- createLogMessage() - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates a log message with the contents of the internal log buffer.
- createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates a log message with the contents of the internal log buffer.
- createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates a log message with the contents of the internal log buffer.
- createLogMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates a log message with the contents of the internal log buffer.
- createLogMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates a log message with the contents of the internal log buffer.
- createLogMessageAndReset() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates a log message with the contents of the internal log buffer.
- createLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
- createNoOPJob(String) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
It creates a NoOP job that runs on the submit host.
- createNoOPJob(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
It creates a NoOP job that runs on the submit host.
- createObject(Invocation, String, List, List) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method determines the actively parsed element, creates the Java object that corresponds to the element, and sets the member variables with the values of the attributes of the element.
- createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Composes the
SiteData
object corresponding to the element name in the XML document. - createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
Composes the
SiteData
object corresponding to the element name in the XML document. - createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
Composes the
SiteData
object corresponding to the element name in the XML document. - createObject(String, List, List) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
Composes the
SiteData
object corresponding to the element name in the XML document. - createParserInstance() - Method in class edu.isi.pegasus.planner.parser.Parser
-
Creates an instance of the parser, and sets the various options to it.
- createPartition(List) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Creates a partition out of a list of nodes.
- createPropertyKey(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Creates the property key
- createRegistrationJob(String, Job, Collection, ReplicaCatalogBridge) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Creates the registration jobs, which registers the materialized files on the output site in the Replica Catalog.
- createRegistrationJob(String, Job, Collection, ReplicaCatalogBridge) - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Creates the registration jobs, which registers the materialized files on the output site in the Replica Catalog.
- createRegistrationJobs() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether we create registration jobs or not.
- CreateSampleSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site.classes
-
Generates a sample site catalog in XML.
- CreateSampleSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
- createSetXBitJob(FileTransfer, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Creates a dirmanager job, that does a chmod on the file being staged.
- createSetXBitJob(Job, Collection<FileTransfer>, int, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
- createSetXBitJob(Job, Collection<FileTransfer>, int, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Adds the dirmanager job to the workflow, that do a chmod on the files being staged.
- createSetXBitJob(Collection<FileTransfer>, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Creates a dirmanager job, that does a chmod on the file being staged.
- createStartLogMsg() - Method in class edu.isi.ikcap.workflows.util.logging.LogEvent
- createSubmitDirectory(ADag, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Creates the submit directory for the workflow.
- createSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Creates the submit directory for the workflow.
- createSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Creates the submit directory for the workflow.
- createSymbolicLink(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
This method generates a symlink between two files
- createSymbolicLink(String, String, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
This method generates a symlink between two files
- createSymbolicLink(String, String, File, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
This method generates a symlink between two files
- createSymbolicLinktoCacheFile(PlannerOptions, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Creates a symbolic link to the DAX file in a dax sub directory in the submit directory
- createSymbolicLinktoDAX(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Creates a symbolic link to the DAX file in a dax sub directory in the submit directory
- createSymlink(String, File) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the number of partitions referred to in the PDAX file.
- createSyncJobBetweenLevels(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
It creates a NoOP synch job that runs on the submit host.
- CreateTCDatabase - Class in edu.isi.pegasus.planner.catalog.transformation.impl
-
This class provides a bridge for creating and initializing transformation catalog on database .
- CreateTCDatabase(String, String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Creates a JDBCTC instance .
- createTest1() - Method in class edu.isi.pegasus.planner.refiner.TestReduceEdges
- createTest2() - Method in class edu.isi.pegasus.planner.refiner.TestReduceEdges
- createTransferJob(Job, FileTransfer, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Constructs a general transfer job that handles single transfers per transfer job.
- createTransferJob(Job, String, FileTransfer, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Constructs a general transfer job that handles single transfers per transfer job.
- createTransferJob(Job, String, Collection, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Constructs a general transfer job that handles multiple transfers per transfer job.
- createTransferJob(Job, String, Collection, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Constructs a general transfer job that handles single transfers per transfer job.
- createTransferJob(Job, String, Collection, Collection, String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
This constructs the Job object for the transfer node.
- createWorkerNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
Creates an object describing the worker node filesystem.
- credential - Variable in class edu.isi.pegasus.gridftp.Command
- credential - Variable in class edu.isi.pegasus.gridftp.GridFTPConnection
- CredentialHandler - Interface in edu.isi.pegasus.common.credential
-
The credential interface that defines the credentials that can be associated with jobs.
- CredentialHandler.TYPE - Enum in edu.isi.pegasus.common.credential
-
An enumeration of valid types of credentials that are supported.
- CredentialHandlerFactory - Class in edu.isi.pegasus.common.credential
-
A factory class to load the appropriate type of Condor Style impelementations.
- CredentialHandlerFactory() - Constructor for class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
The default constructor.
- CredentialHandlerFactoryException - Exception in edu.isi.pegasus.common.credential
-
Class to notify of failures while instantiating Condor Style implementations.
- CredentialHandlerFactoryException(String) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
Constructs a
CondorStyleFactoryException
with no detail message. - CredentialHandlerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
Constructs a
CondorStyleFactoryException
with the specified detailed message. - CredentialHandlerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
Constructs a
CondorStyleFactoryException
with the specified detailed message and a cause. - CredentialHandlerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
Constructs a
CondorStyleFactoryException
with the specified detailed message and a cause. - critEdge - Variable in class edu.isi.pegasus.planner.provisioner.Node
- cState - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
Table to contain the state transition diagram for the parser.
- Currently - Class in edu.isi.pegasus.common.util
-
Create a common interface to handle obtaining string timestamps.
- Currently() - Constructor for class edu.isi.pegasus.common.util.Currently
-
Default ctor: Create a new instance with a default formatting string for timestamps.
- Currently(String) - Constructor for class edu.isi.pegasus.common.util.Currently
-
Ctor: Create a new instance with a formatting string for time stamps.
- Currently(SimpleDateFormat) - Constructor for class edu.isi.pegasus.common.util.Currently
-
Ctor: Create a new instance with a formatting string for time stamps.
D
- DAG - Class in edu.isi.pegasus.planner.dax
-
DAG Class to hold the DAG job object.
- DAG(DAG) - Constructor for class edu.isi.pegasus.planner.dax.DAG
-
Copy Constructor
- DAG(String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAG
-
Create a DAG object
- DAG(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAG
-
Create a DAG object
- DAG_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- DAG_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- DAG_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a chmod job that sets the xbit on the remote end.
- DAG_JOB - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The constant string to write for dag job notifications.
- DAG_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The class ad for the jobId.
- DagInfo - Class in edu.isi.pegasus.planner.classes
-
Holds the information needed to make one dag file corresponding to a Abstract Dag.
- DagInfo() - Constructor for class edu.isi.pegasus.planner.classes.DagInfo
-
The default constructor.
- DAGJob - Class in edu.isi.pegasus.planner.classes
-
This is a data class that stores the contents of the DAG job in a DAX conforming to schema 3.0 or higher.
- DAGJob() - Constructor for class edu.isi.pegasus.planner.classes.DAGJob
-
The default constructor.
- DAGJob(Job) - Constructor for class edu.isi.pegasus.planner.classes.DAGJob
-
The overloaded construct that constructs a DAG job by wrapping around the
Job
job. - dagman - edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- dagman - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- Dagman - Class in edu.isi.pegasus.planner.namespace
-
This profile namespace is the placeholder for the keys that go into the .dag file .
- Dagman() - Constructor for class edu.isi.pegasus.planner.namespace.Dagman
-
The default constructor.
- Dagman(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Dagman
-
The overloaded constructor.
- Dagman(Map, String) - Constructor for class edu.isi.pegasus.planner.namespace.Dagman
-
The overloaded constructor.
- DAGMAN - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- DAGMAN - Static variable in class edu.isi.pegasus.planner.classes.Profile
- DAGMAN_KNOBS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The dagman knobs controlled through property.
- DAGMAN_KNOBS - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The dagman knobs controlled through property.
- DAGMAN_PROPERTIES_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The prefix for DAGMan specific properties
- dagmanVariables - Variable in class edu.isi.pegasus.planner.classes.Job
-
The DAGMAN namespace profile variable holding the dagman profiles.
- Data - Class in edu.isi.pegasus.planner.classes
-
This is the container for all the Data classes.
- Data - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- Data() - Constructor for class edu.isi.pegasus.planner.classes.Data
-
The default constructor.
- Data() - Constructor for class edu.isi.pegasus.planner.invocation.Data
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- Data(String) - Constructor for class edu.isi.pegasus.planner.invocation.Data
-
Constructs a piece of data.
- Data(String, boolean) - Constructor for class edu.isi.pegasus.planner.invocation.Data
-
Constructs a piece of data.
- DATA_CHARACTERIZATION_PROGRAM - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- DATA_FILE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The type denoting that a logical file is a data file.
- DATA_TYPE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The string value of a file that is of type data.
- Database - Class in edu.isi.pegasus.planner.catalog.transformation.impl
- Database - Class in edu.isi.pegasus.planner.catalog.work
-
This class implements a work catalog on top of a simple table in a JDBC database.
- Database() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Database
- Database() - Constructor for class edu.isi.pegasus.planner.catalog.work.Database
-
Default empty constructor creates an object that is not yet connected to any database.
- Database(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.work.Database
-
Convenience c'tor: Establishes the connection to the work catalog database.
- DATABASE_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database format.
- DataReuseEngine - Class in edu.isi.pegasus.planner.refiner
-
The data reuse engine reduces the workflow on the basis of existing output files of the workflow found in the Replica Catalog.
- DataReuseEngine(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
The constructor
- DataReuseEngine.BooleanBag - Class in edu.isi.pegasus.planner.refiner
-
A bag implementation that cam be used to hold a boolean value associated with the graph node
- DATE_KW - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- dateEnd - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- dateStart - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- DAX - Class in edu.isi.pegasus.planner.dax
-
Creates a DAX job object
- DAX(DAX) - Constructor for class edu.isi.pegasus.planner.dax.DAX
-
Copy Constructor
- DAX(String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAX
-
Create a DAX job object
- DAX(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.DAX
-
Create a DAX job object
- DAX_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- DAX_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- DAX_INDEX_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The dax index
- DAX_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a chmod job that sets the xbit on the remote end.
- DAX_JOB - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The constant string to write for dax job notifications.
- DAX_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The classad for generating the DAX ID
- DAX_LABEL_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The DAX label.
- DAX_PARSER2_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
The DAXParser3 classname
- DAX_PARSER3_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
The DAXParser3 classname
- DAX_REPLICA_STORE_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The name of the Replica Catalog Implementer that serves as the source for cache files.
- DAX_REPLICA_STORE_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The name of the source key for Replica Catalog Implementer that serves as the repository for DAX Replica Store
- DAX_REPLICA_STORE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Suffix to be applied for the DAX Replica Store.
- DAX_VERRSION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The DAX version.
- DAX_VERSION_3_2_0 - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
- DAX_VERSION_3_2_0 - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
- DAX_VERSION_3_3_0 - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
- DAX_VERSION_WITHOUT_DOUBLE_NEGATIVE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The constant designating the version when the double negative transfer and registration flags were removed.
- DAX2CDAG - Class in edu.isi.pegasus.planner.parser.dax
-
This creates a dag corresponding to one particular partition of the whole abstract plan.
- DAX2CDAG() - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
- DAX2Graph - Class in edu.isi.pegasus.planner.parser.dax
-
This callback implementation ends up building a detailed structure of the graph referred to by the abstract plan in dax, that should make the graph traversals easier.
- DAX2Graph() - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2Graph
- DAX2LabelGraph - Class in edu.isi.pegasus.planner.parser.dax
-
The callback, that ends up building a label graph.
- DAX2LabelGraph() - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
- DAX2Metadata - Class in edu.isi.pegasus.planner.parser.dax
-
A callback that causes the parser to exit after the metadata about the DAX has been parsed.
- DAX2Metadata() - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
- DAX2NewGraph - Class in edu.isi.pegasus.planner.parser.dax
-
An exploratory implementation that builds on the DAX2Graph.
- DAX2NewGraph() - Constructor for class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
- DAXJob - Class in edu.isi.pegasus.planner.classes
-
This is a data class that stores the contents of the DAX job in a DAX conforming to schema 3.0 or higher.
- DAXJob() - Constructor for class edu.isi.pegasus.planner.classes.DAXJob
-
The default constructor.
- DAXJob(Job) - Constructor for class edu.isi.pegasus.planner.classes.DAXJob
-
The overloaded construct that constructs a DAX job by wrapping around the
Job
job. - DAXParser - Interface in edu.isi.pegasus.planner.parser.dax
-
An interface for all the DAX Parsers
- DAXParser2 - Class in edu.isi.pegasus.planner.parser.dax
-
This class parses the XML file whichis generated by Abstract Planner and ends up making an ADag object which contains theinformation to make the Condor submit files.
- DAXParser2(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The default constructor
- DAXParser3 - Class in edu.isi.pegasus.planner.parser.dax
-
This class uses the Xerces SAX2 parser to validate and parse an XML document conforming to the DAX Schema 3.2
- DAXParser3(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
The overloaded constructor.
- DAXParser3.Arguments - Class in edu.isi.pegasus.planner.parser.dax
-
Private class to handle mix data content for arguments tags.
- DAXParserFactory - Class in edu.isi.pegasus.planner.parser
-
A factory class to load the appropriate DAX Parser and Callback implementations that need to be passed to the DAX Parser.
- DAXParserFactory() - Constructor for class edu.isi.pegasus.planner.parser.DAXParserFactory
- DAXParserFactoryException - Exception in edu.isi.pegasus.planner.parser
-
Class to notify of failures while instantiating DAXCallback implementations.
- DAXParserFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
Constructs a
DAXParserFactoryException
with no detail message. - DAXParserFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
Constructs a
DAXParserFactoryException
with the specified detailed message. - DAXParserFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
Constructs a
DAXParserFactoryException
with the specified detailed message and a cause. - DAXParserFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
Constructs a
DAXParserFactoryException
with the specified detailed message and a cause. - DAXReplicaStore - Class in edu.isi.pegasus.planner.code.generator
-
A generator that writes out the replica store containing a file based replica catalog that has the file locations mentioned in the DAX.
- DAXReplicaStore() - Constructor for class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
- DAXValidator - Class in edu.isi.pegasus.planner.client
-
This class reads to validate a DAX document.
- DAXValidator(boolean) - Constructor for class edu.isi.pegasus.planner.client.DAXValidator
-
default c'tor
- DAXWriter - Class in edu.isi.pegasus.planner.partitioner
-
The abstract class that identifies the interface for writing out a dax corresponding to a partition.
- DAXWriter() - Constructor for class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The default constructor
- DAXWriter(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The overloaded constructor.
- DB_ALL_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.Catalog
-
The default DB Driver properties prefix.
- DB_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
The DB Driver properties prefix.
- DB_PREFIX - Static variable in interface edu.isi.pegasus.planner.catalog.WorkCatalog
-
The DB Driver properties prefix.
- DB_PREFIX - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
The DB Driver properties prefix.
- DEBUG_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a DEBUG message.
- DEBUG_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a DEBUG message.
- decide(LoggingEvent) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage.Log4jFilter
- decode(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Transforms a given string by decoding all characters and unescaping where required.
- decrement(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Decrement the metrics when on the basis of type of job being removed
- decrementIndentIndex() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
Decrements the indent index
- decrementJobMetrics(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Decrement the metrics when on the basis of type of job.
- decrementLogging() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Deccrements the logging level by 1.
- decrementLogging() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Decrements the logging level by 1.
- decrementLogging() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Decrements the logging level by 1.
- decrementTaskMetrics(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Decrement the task metrics when on the basis of type of job.
- Default - Class in edu.isi.pegasus.common.logging.logger
-
The logging class that to log messages at different levels.
- Default - Class in edu.isi.pegasus.planner.selector.replica
-
The default replica selector that is used if non is specifed by the user.
- Default() - Constructor for class edu.isi.pegasus.common.logging.logger.Default
-
The constructor.
- Default(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.selector.replica.Default
-
The overloaded constructor, that is called by load method.
- DEFAULT - Static variable in class edu.isi.pegasus.common.util.Separator
-
Deprecated.The default namespace is
null
. - DEFAULT_ADAG_COUNT_ATTRIBUTE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Default attribute value for the count attribute
- DEFAULT_ADAG_INDEX_ATTRIBUTE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Default index value for the count attribute
- DEFAULT_ARCHITECTURE - Static variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The default Architecture the entry is associated with if none is specified
- DEFAULT_BPS - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
- DEFAULT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for the workflow.
- DEFAULT_CALLBACK_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Package to prefix "just" class names with.
- DEFAULT_CHMOD_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with chmod jobs.
- DEFAULT_CHUNK_FACTOR - Static variable in class edu.isi.pegasus.planner.client.RCClient
-
The default chunk factor that is used for biting off chunks of large files.
- DEFAULT_CLEANUP_CATEGORY_KEY - Static variable in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupImplementation
-
Default category for registration jobs
- DEFAULT_CLEANUP_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the cleanup jobs.
- DEFAULT_CLUSTERED_CLEANUP_JOBS_PER_LEVEL - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The default value for the number of clustered cleanup jobs created per level.
- DEFAULT_COLLAPSE_FACTOR - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The default collapse factor for collapsing jobs with same logical name scheduled onto the same execution pool.
- DEFAULT_COLLAPSE_FACTOR - Static variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
The default collapse factor for collapsing jobs with same logical name scheduled onto the same execution pool.
- DEFAULT_COMP_ERROR_PERCENTAGE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_COMP_MULTIPLICATION_FACTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_COMP_VARIANCE_PERCENTAGE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_CONDOR_BIN_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_CONDOR_COLLECTOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default condor collector to query to for non LIGO VO's
- DEFAULT_CONDOR_COLLECTOR_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The property key without the pegasus prefix'es to get the condor collector host.
- DEFAULT_CONDOR_CONFIG_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_CREATE_DIR_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the create dir jobs.
- DEFAULT_CTX - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- DEFAULT_DAGMAN_MAX_PRE_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default value to be assigned for dagman.maxpre .
- DEFAULT_DATA_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The default data configuration value
- DEFAULT_DATA_MULTIPLICATION_FACTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_DATABASE - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The default database .
- DEFAULT_DAX_CALLBACK - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default DAXCallback that is loaded, if none is specified by the user.
- DEFAULT_DAX_PARSER_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
The default DAXParser classname
- DEFAULT_DELIMITER - Static variable in class edu.isi.pegasus.planner.namespace.aggregator.UniqueMerge
-
Default delimiter
- DEFAULT_EXEC_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_FORMAT - Static variable in class edu.isi.pegasus.common.util.Currently
-
Default time format, which is compact and has a timezone
- DEFAULT_GRID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default Grid to retreive the sites for.
- DEFAULT_GRID_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The property key without the pegasus prefix'es to get the grid.
- DEFAULT_GRIDSTART_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_INTER_SITE_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the inter site transfer jobs.
- DEFAULT_INVOKE_LENGTH - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_JOB_AGGREGATOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_KEY - Static variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
The default key to use for logging messages
- DEFAULT_LABEL_KEY - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
The default key for the VDS namespace profile, that is used in case none is specified by the user.
- DEFAULT_LATENCY - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
- DEFAULT_LIGO_CONDOR_COLLECTOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default condor collector to query to for LIGO VO
- DEFAULT_LOCAL_STAGE_IN_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
- DEFAULT_LOCAL_STAGE_IN_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
- DEFAULT_LOCAL_STAGE_IN_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The default clustering factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
- DEFAULT_LOCAL_STAGE_OUT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
- DEFAULT_LOCAL_STAGE_OUT_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
- DEFAULT_LOCAL_STAGE_OUT_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
- DEFAULT_LOGGER - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The default Logger
- DEFAULT_LOGGING_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_LOGGING_LEVEL - Static variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The default logging level.
- DEFAULT_LRC_IGNORE_URL - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_MAX_JOBS_FOR_CLEANUP_CATEGORY - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The default value for the maxjobs variable for the category of cleanup jobs.
- DEFAULT_MEGADAG_MODE - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The default megadag mode that is used for generation of megadags in deferred planning.
- DEFAULT_METADATA_TYPE - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Constant denoting default metadata type
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.credential.CredentialHandlerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.logging.LogFormatterFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.logging.LogManagerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.common.util.FactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The default name for the ADag object, if not supplied in the DAX.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.cluster.ClustererFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.CodeGeneratorFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.parser.DAXParserFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.refiner.cleanup.CleanupFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NAME - Static variable in exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
The default classname that is associated with the exception.
- DEFAULT_NUMBER_OF_FREE_NODES - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The default number of nodes that are associated with a site if not found in the site catalog.
- DEFAULT_NUMBER_OF_RESCUE_TRIES - Static variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The value of number of rescue retries if no value is specified
- DEFAULT_NUMBER_OF_THREADS - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The default number of threads pegasus-transfer uses
- DEFAULT_NUMBER_OF_THREADS - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The default number of threads pegasus-transfer uses
- DEFAULT_OS - Static variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The default OS the entry is associated with if none is specified
- DEFAULT_OUTPUT_MAPPER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactory
-
The default mapper implementation that is picked up.
- DEFAULT_PACKAGE - Static variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE - Static variable in class edu.isi.pegasus.planner.catalog.work.WorkFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
The default package where the all the implementing classes are supposed to reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.logging.LogFormatterFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.common.logging.LogManagerFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.site.SiteFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
The default package where the all the implementing classes are supposed to reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The default package where the all the implementing classes are supposed to reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The package name where the implementations of this interface reside by default.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
Package to prefix "just" class names with.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory
-
The default package where all the implementations reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory
-
The default package where the all the implementing classes are supposed to reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
-
The default package where the all the implementing classes provided with the VDS reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory
-
The default package where the all the implementing classes provided with the VDS reside.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The default package where the implementations reside, which this factory loads.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactory
-
The default package where the implementations reside, which this factory loads.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory
-
The default package where the implementations reside, which this factory loads.
- DEFAULT_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.SLSFactory
-
The default package where the all the implementing classes are supposed to reside.
- DEFAULT_PARSER_NAME - Variable in class edu.isi.pegasus.planner.parser.Parser
-
Default parser name.
- DEFAULT_PARSER_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Package to prefix "just" class names with.
- DEFAULT_PARSER_PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
-
Package to prefix "just" class names with.
- DEFAULT_PARTITIONER_TYPE - Static variable in class edu.isi.pegasus.planner.client.PartitionDAX
-
The name of the default partitioner that is loaded, if none is specified by the user.
- DEFAULT_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
The name of the class that does level based partitioning.
- DEFAULT_PERIODIC_RELEASE_VALUE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Default value for the periodic_release for a job
- DEFAULT_PERIODIC_REMOVE_VALUE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Default value for the periodic_remove for a job
- DEFAULT_POOL_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_POST_SCRIPT_ARGUMENTS_KEY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The default value for the arguments passed to postscript
- DEFAULT_PPS_PROVIDER - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
-
The default PPS implementation to be used.
- DEFAULT_PRE_SCRIPT_ARGUMENTS_KEY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The default value for the arguments passed to prescript
- DEFAULT_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The default priority key associated with the cleanup jobs.
- DEFAULT_PROTOCOL - Static variable in class edu.isi.pegasus.common.util.PegasusURL
-
The default protocol if none is determined from the PegasusURL or path
- DEFAULT_RC_COLLECTION - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_REFINER - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The default transfer refiner name.
- DEFAULT_REFINER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory
-
The default refiner implementation that is picked up.
- DEFAULT_REGISTRATION_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Default category for registration jobs
- DEFAULT_REMOTE_STAGE_IN_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
- DEFAULT_REMOTE_STAGE_IN_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
- DEFAULT_REMOTE_STAGE_IN_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The default clustering factor that identifies the number of transfer jobs that are being created per execution pool for stageing in data for the workflow.
- DEFAULT_REMOTE_STAGE_OUT_BUNDLE_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
- DEFAULT_REMOTE_STAGE_OUT_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
- DEFAULT_REMOTE_STAGE_OUT_CLUSTER_FACTOR - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The default bundling factor that identifies the number of transfer jobs that are being created per execution pool for stageing out data for the workflow.
- DEFAULT_REPLICA_BACKEND - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
The default replica catalog backend.
- DEFAULT_REPLICA_REG_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the replica registration jobs.
- DEFAULT_REPLICA_SELECTOR - Static variable in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
-
The name of the class in the DEFAULT package, that corresponds to the default replica selector.
- DEFAULT_RETRIEVE_VALIDATED_SITES - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default VO to use to query the condor collector.
- DEFAULT_RETRIEVE_VALIDATED_SITES_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The property key without the pegasus prefix'es to get the VO.
- DEFAULT_RETRY_VALUE - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The default value for the JOB Retries
- DEFAULT_RLI_URL - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_RLS_EXIT_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_RLS_QUERY_ATTRIB - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_RLS_QUERY_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_RLS_TIMEOUT - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_RM_LOCATION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The default path to rm executable.
- DEFAULT_RM_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The default logical name to rm executable.
- DEFAULT_SC_PARSER_CLASS - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
-
The default Site Catalog Parser
- DEFAULT_SETUP_TRANSFER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
- DEFAULT_SITE_HANDLE - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
The default site handle to use.
- DEFAULT_SITE_SELECTOR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_SITE_SELECTOR - Static variable in class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory
-
The name of the class in the DEFAULT package, that corresponds to the default site selector.
- DEFAULT_SITE_SELECTOR_KEEP - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_SITE_SELECTOR_TIMEOUT - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_SIZE - Static variable in class edu.isi.pegasus.planner.provisioner.Edge
- DEFAULT_SLS_IMPL_CLASS - Static variable in class edu.isi.pegasus.planner.transfer.sls.SLSFactory
-
The name of the class implementing the condor code generator.
- DEFAULT_STAGE_IN_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the stagein jobs.
- DEFAULT_STAGE_OUT_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default priority key associated with the stage out jobs.
- DEFAULT_STAGING_DELIMITER - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_STORAGE_DIR - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_SUBDAG_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The default category for the sub dax jobs.
- DEFAULT_SUBDAX_CATEGORY_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The default category for the sub dax jobs.
- DEFAULT_TC_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
- DEFAULT_TC_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
Some Constants for backward compatibility.
- DEFAULT_TC_MAPPER_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_TC_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_TRANSFER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
- DEFAULT_TRANSFER_PROCESSES - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_TRANSFER_STREAMS - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_TX_SELECTOR_MODE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- DEFAULT_URL_PREFIX - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
The default URL Prefix to use.
- DEFAULT_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default VO to use to query the condor collector.
- DEFAULT_VO_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The property key without the pegasus prefix'es to get the VO.
- DEFAULT_WEIGHT - Static variable in class edu.isi.pegasus.planner.provisioner.Node
- DEFAULT_XML_PRODUCER - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory
-
The default XML producer implementation to be used.
- defaultBrainDumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Returns default braindump entries.
- DefaultImplementation - Class in edu.isi.pegasus.planner.refiner.createdir
-
The default implementation for creating create dir jobs.
- DefaultImplementation() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
- defaultPOSTScript() - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Returns the SHORT_NAME for the POSTScript implementation that is used to be as default with this GridStart implementation.
- defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the SHORT_NAME for the POSTScript implementation that is used to be as default with this GridStart implementation.
- defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the SHORT_NAME for the POSTScript implementation that is used to be as default with this GridStart implementation.
- defaultPOSTScript() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the SHORT_NAME for the POSTScript implementation that is used to be as default with this GridStart implementation.
- defaultProps() - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Set some defaults, should values be missing in the dataset.
- DefaultStreamGobblerCallback - Class in edu.isi.pegasus.common.util
-
The default callback for the stream gobbler, that logs all the messages to a particular logging level.
- DefaultStreamGobblerCallback(int) - Constructor for class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback
-
The overloaded constructor.
- defaultTCEntry() - Static method in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Returns a default TransformationCatalogEntry object for the rm executable.
- defaultTCEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCEntry(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultTCRCEntry() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultUntarTCEntry(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- defaultXBitTCEntry(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Returns a default TC entry to be used in case entry is not found in the transformation catalog.
- deferred - edu.isi.pegasus.planner.common.PegasusProperties.CLEANUP_SCOPE
- delete - Variable in class edu.isi.pegasus.planner.client.TCClient
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Deletes a very specific mapping from the replica catalog.
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes a very specific mapping from the replica catalog.
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes a very specific mapping from the replica catalog.
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Deletes a very specific mapping from the replica catalog.
- delete(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes a very specific mapping from the replica catalog.
- delete(String, ReplicaCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes a very specific mapping from the replica catalog.
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Deletes a specific mapping from the replica catalog.
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes a specific mapping from the replica catalog.
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes a specific mapping from the replica catalog.
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Deletes a specific mapping from the replica catalog.
- delete(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes a specific mapping from the replica catalog.
- delete(String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes a specific mapping from the replica catalog.
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- delete(String, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- delete(String, String, Object) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes all PFN entries for a given LFN from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- delete(String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Deletes a mapping from the work catalog.
- delete(String, String, String, String) - Method in interface edu.isi.pegasus.planner.catalog.WorkCatalog
-
Deletes a mapping from the work catalog.
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Deletes multiple mappings into the replica catalog.
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes multiple mappings into the replica catalog.
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes multiple mappings into the replica catalog.
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Deletes multiple mappings into the replica catalog.
- delete(Map, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes multiple mappings into the replica catalog.
- delete(Map, boolean) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes multiple mappings into the replica catalog.
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
- deleteByResource(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
- deleteByResource(String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Deletes all PFN entries for a given LFN from the replica catalog where the resource handle is found.
- deleted - Variable in class edu.isi.pegasus.planner.provisioner.Edge
- DELETED_JOBS_LEVEL - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The MAX level is assigned as the level for deleted jobs.
- deleteDatabase(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Deletes the database
- deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete a list of profiles or all the profiles associated with a logical transformation.
- deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Delete a list of profiles or all the profiles associated with a logical transformation.
- deleteLFNProfiles(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Delete a list of profiles or all the profiles associated with a logical transformation.
- deleteLFNProfiles(String, String, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Delete a list of profiles or all the profiles associated with a logical transformation.
- deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete a list of profiles or all the profiles associated with a pfn on a resource and of a type.
- deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Delete a list of profiles or all the profiles associated with a pfn on a resource and of a type.
- deletePFNProfiles(String, TCType, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Delete a list of profiles or all the profiles associated with a pfn on a resource and of a type.
- deletePFNProfiles(String, TCType, String, List) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Delete a list of profiles or all the profiles associated with a pfn on a resource and of a type.
- deleteProfile(Profile, long, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete a given lfn or pfn profile
- DELIMITER - Static variable in class edu.isi.pegasus.planner.classes.Job
-
The delimiter that has to be used to combine the name for the staged executable.
- DELIMITER - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The delimiter with which to separate different fields in the notifications file.
- deltacloud - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- depart(Connection) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Depart the connection object
- depart(Connection) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Depart the connection object
- depart(Connection) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Depart the connection object
- depart(Directory) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Depart the Directory object
- depart(Directory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Depart the shared directory
- depart(Directory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Depart the shared directory
- depart(FileServer) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Depart the Directory object
- depart(FileServer) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Depart the Directory object
- depart(FileServer) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Depart the Directory object
- depart(GridGateway) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Depart the GridGateway object
- depart(GridGateway) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Depart the GridGateway object
- depart(GridGateway) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Depart the GridGateway object
- depart(ReplicaCatalog) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Depart the ReplicaCatalog object
- depart(ReplicaCatalog) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Depart the ReplicaCatalog object
- depart(ReplicaCatalog) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Depart the ReplicaCatalog object
- depart(SiteCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Depart the Site Catalog Entry object.
- depart(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Depart the Site Catalog Entry object.
- depart(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Depart the Site Catalog Entry object.
- depart(SiteData) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
- depart(SiteData) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
- depart(SiteStore) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Depart the Site Store object.
- depart(SiteStore) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Depart the Site Store object.
- depart(SiteStore) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Depart the Site Store object.
- DEPLOY_WORKER_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Constant suffix for the names of the deployment nodes.
- DeployWorkerPackage - Class in edu.isi.pegasus.planner.refiner
-
The refiner that is responsible for adding - setup nodes that deploy a worker package on each deployment site at start of workflow execution - cleanup nodes that undeploy a worker package on each deployment site at end workflow execution
- DeployWorkerPackage(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
A pratically nothing constructor !
- DEPRECATED_BUNDLE_STAGE_IN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The deprecated bundle stagein key.
- DEPRECATED_CHANGE_DIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The deprecated change dir key.
- DEPRECATED_CONDOR_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the condor configuration.
- DEPRECATED_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The key is deprecated.
- DEPRECATED_S3_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the S3 configuration.
- deprecatedKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Warns about a deprecated profile key.
- deprecatedTable() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Singleton access to the deprecated table that holds the deprecated keys, and the keys that replace them.
- deprecatedTable() - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Singleton access to the deprecated table that holds the deprecated keys, and the keys that replace them.
- deprecatedValueMessage(String, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Returns the deperecated value message
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The logical name of the transformation that creates directories on the remote execution pools.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The logical name of the transformation that creates directories on the remote execution pools.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The logical name of the transformation for the worker package
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The logical name of the transformation that removes directories on the remote execution pools.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The name of the underlying derivation.
- DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The name of the underlying derivation.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The derivation namespace for the cluster jobs.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The derivation namespace for the job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The derivation namespace for the create dir jobs.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The derivation namespace for the create dir jobs.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The derivation namespace for the worker package.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The derivation namespace for the create dir jobs.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The derivation namespace for for the transfer job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The derivation namespace for for the transfer job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The derivation namespace for for the transfer job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The derivation namespace for for the transfer job.
- DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The derivation namespace for for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The version number for the derivations for cluster jobs.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The derivation version number for the job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The version number for the derivations for create dir jobs.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The version number for the derivations for create dir jobs.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The version number for the derivations for worker package.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The version number for the derivations for create dir jobs.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The derivation version number for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The derivation version number for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The derivation version number for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The derivation version number for the transfer job.
- DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The derivation version number for the transfer job.
- descendants - Variable in class edu.isi.pegasus.planner.provisioner.Node
- description() - Method in interface edu.isi.pegasus.planner.cluster.Clusterer
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Returns a textual description of the partitioner implementation.
- description() - Method in class edu.isi.pegasus.planner.partitioner.Label
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.partitioner.One2One
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.partitioner.Partitioner
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.partitioner.Whole
-
Returns a textual description of the transfer implementation.
- description() - Method in class edu.isi.pegasus.planner.selector.replica.Default
-
Returns a short description of the replica selector.
- description() - Method in class edu.isi.pegasus.planner.selector.replica.Local
-
Returns a short description of the replica selector.
- description() - Method in class edu.isi.pegasus.planner.selector.replica.Regex
-
Returns a short description of the replica selector.
- description() - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a short description of the replica selector.
- description() - Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector
-
Returns a short description of the replica selector, that is being implemented by the implementing class.
- description() - Method in class edu.isi.pegasus.planner.selector.site.Group
-
Returns the description of the site selector.
- description() - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
This method returns a String describing the site selection technique that is being implemented by the implementing class.
- description() - Method in class edu.isi.pegasus.planner.selector.site.Heft
-
This method returns a String describing the site selection technique that is being implemented by the implementing class.
- description() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Returns a brief description of the site selection technique implemented by this class.
- description() - Method in class edu.isi.pegasus.planner.selector.site.Random
-
Returns a brief description of the site selection technique being used.
- description() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
Returns a brief description of the site selection techinque implemented by this class.
- description() - Method in interface edu.isi.pegasus.planner.selector.SiteSelector
-
This method returns a String describing the site selection technique that is being implemented by the implementing class.
- description() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Returns a short description of the mapper.
- description() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Flat
-
Returns a short description of the mapper.
- description() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
Returns a short description of the mapper.
- description() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
Returns a short description of the mapper.
- description() - Method in interface edu.isi.pegasus.planner.transfer.mapper.OutputMapper
-
Returns a short description of the mapper.
- DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Irods
-
The description.
- DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Proxy
-
The description.
- DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.S3CFG
-
The description
- DESCRIPTION - Static variable in class edu.isi.pegasus.common.credential.impl.Ssh
-
The description
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Describes the transformation catalog mode.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
A short description about the partitioner.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.cluster.Vertical
-
A short description about the partitioner.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.BFS
-
A short description about the partitioner.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
A short description about the partitioner.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Label
-
A short description about the partitioner.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.One2One
-
A short description about the partitioner.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.partitioner.Whole
-
A short description about the partitioner.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Short description.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Flat
-
Short description.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
Short description.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
Short description.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
A short description of the transfer refinement.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
A short description of the transfer implementation.
- DESCRIPTION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
A short description of the transfer implementation.
- Descriptor - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for a file descriptor object.
- Descriptor() - Constructor for class edu.isi.pegasus.planner.invocation.Descriptor
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- Descriptor(int) - Constructor for class edu.isi.pegasus.planner.invocation.Descriptor
-
Constructs a file descriptor.
- desET - Variable in class edu.isi.pegasus.planner.provisioner.Node
- DEST_ID - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- dest_subnet_id - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- Dest_Subnet_Id - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- determine(Implementation, Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.BundleValue
-
Determines the bundle factor for a particular site on the basis of the stage in bundle value associcated with the underlying transfer transformation in the transformation catalog.
- determine(Implementation, Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
Determines the bundle factor for a particular site on the basis of the stage in bundle value associcated with the underlying transfer transformation in the transformation catalog.
- determineBuilt() - Method in class edu.isi.pegasus.common.util.Version
-
Deprecated.Use getTimestamp() instead
- determineChunkFactor() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Sets the chunk factor for chunking up large input files.
- determineClusters(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
It creates a single clustered job for the partition.
- determineClusters(Partition) - Method in interface edu.isi.pegasus.planner.cluster.Clusterer
-
Determine the clusters for a partition.
- determineClusters(Partition) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Determine the clusters for a partition.
- determineDisabledChmodSites(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Builds up a set of disabled chmod sites
- determineExitStatus(InvocationRecord) - Method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
Determines the exit code of an invocation record.
- determineInputOutputFiles(AggregatedJob, List<Job>) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Determine the input and output files of the job on the basis of the order of the constituent jobs in the AggregatedJob.
- determineInputOutputFiles(AggregatedJob, List<Job>) - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Determine the input and output files of the job on the basis of the order of the constituent jobs in the AggregatedJob.
- determineInstalled() - Method in class edu.isi.pegasus.common.util.Version
-
Determines the built and architecture of the installation.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Does a constrained breadth first search to identify the partitions, and calls out to write out the partition graph.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Label
-
Partitions the graph passed in the constructor, on the basis of the labels associated with the nodes in the graph.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.One2One
-
This ends up writing out a partition for each job in the dax.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The main function that ends up traversing the graph structure corrsponding to the dax and creates the smaller dax files(one dax file per partition) and the .pdax file that illustrates the partition graph.
- determinePartitions(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Whole
-
This ends up writing out a partition for each job in the dax.
- determinePlatform() - Method in class edu.isi.pegasus.common.util.Version
-
Deprecated.Used getPlatform() instead
- determineRelativeSubmitDirectory(ADag, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Creates the submit directory for the workflow.
- determineRelativeSubmitDirectory(String, String, String, String, boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Creates the submit directory for the workflow.
- determineRootWorkflowUUID(ADag, PlannerOptions, PegasusProperties) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Determines the workflow uuid for a workflow
- determineSites() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
This is where the callout to the Partitioner should take place, that partitions the workflow into clusters and sends to the site selector only those list of jobs that are ready to be scheduled.
- determineSLSInputTransfers(Job, String, FileServer, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Generates a second level staging file of the input files to the worker node directory.
- determineSLSInputTransfers(Job, String, FileServer, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Generates a second level staging file of the input files to the worker node directory.
- determineSLSInputTransfers(Job, String, FileServer, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Generates a second level staging file of the input files to the worker node directory.
- determineSLSOutputTransfers(Job, String, FileServer, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Generates a second level staging file of the input files to the worker node directory.
- determineSLSOutputTransfers(Job, String, FileServer, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Generates a second level staging file of the input files to the worker node directory.
- determineSLSOutputTransfers(Job, String, FileServer, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Generates a second level staging file of the input files to the worker node directory.
- Diamond - Class in edu.isi.pegasus.planner.dax.examples
-
An example class to highlight how to use the JAVA DAX API to generate a diamond DAX.
- Diamond() - Constructor for class edu.isi.pegasus.planner.dax.examples.Diamond
- Diamond() - Static method in class edu.isi.pegasus.planner.dax.ADAG
- DIGIT - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- Directory - Class in edu.isi.pegasus.planner.catalog.replica.impl
-
This class implements a replica catalog on top of a directory.
- Directory - Class in edu.isi.pegasus.planner.catalog.site.classes
-
The Directory class used for Site Catalog Schema version 4 onwards.
- Directory() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Default empty constructor creates an object that is not yet connected to any database.
- Directory() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Directory
-
Default constructor
- Directory(DirectoryLayout, Directory.TYPE) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.Directory
-
Convenience constructor for adapter class
- DIRECTORY_EXTERNAL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that indicates the directory in which the DAG has to be execute
- DIRECTORY_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
The name of the key that specifies the path to directory.
- DIRECTORY_REPLICA_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the Replica Catalog Implementer that serves as the source for cache files.
- DIRECTORY_REPLICA_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the source key for Replica Catalog Implementer that serves as cache
- Directory.TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes
-
Enumerates the new directory types supported in this schema
- DirectoryLayout - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An abstract base class that creates a directory type.
- DirectoryLayout() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
The default constructor.
- DirectoryLayout(DirectoryLayout) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
The copy constructor
- DirectoryLayout(Map<FileServerType.OPERATION, List<FileServer>>, InternalMountPoint) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
The overloaded constructor
- DirectoryNotEmptyException - Exception in edu.isi.pegasus.gridftp
- DirectoryNotEmptyException(String) - Constructor for exception edu.isi.pegasus.gridftp.DirectoryNotEmptyException
- DirectoryNotEmptyException(String, Throwable) - Constructor for exception edu.isi.pegasus.gridftp.DirectoryNotEmptyException
- DirectoryRemovalException - Exception in edu.isi.pegasus.gridftp
- DirectoryRemovalException(String) - Constructor for exception edu.isi.pegasus.gridftp.DirectoryRemovalException
- DirectoryRemovalException(String, Throwable) - Constructor for exception edu.isi.pegasus.gridftp.DirectoryRemovalException
- DirectoryTypes() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor.DirectoryTypes
- DISABLE_INVOKE_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
the name of the property to disable invoke functionality
- disableChmodJobCreation(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Returns a boolean indicating whether to disable chmod job creation for a site or not.
- disableInvokeInGridStart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to disable use of invoke or not.
- displayResults(NamingEnumeration, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Displays the result on stdout instead of putting it in data classes.
- DO_NOT_REGISTER_BIT_FLAG - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The index of the flags field which when set indicates that the file is not to be registered in the RLS/ RC.
- doAdds() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
- doBackupAndCreateSymbolicLinkForSubmitDirectory(String, String) - Method in class edu.isi.pegasus.planner.client.CPlanner
- doDelete() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCDelete
- doesCondorModifications() - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Returns a boolean whether the SLS implementation does a condor based modification or not.
- doesCondorModifications() - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Returns a boolean whether the SLS implementation does a condor based modification or not.
- doesCondorModifications() - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns a boolean whether the SLS implementation does a condor based modification or not.
- doesPreserveXBit() - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
- doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
- doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
- doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
- doesPreserveXBit() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns a boolean indicating whether the transfer protocol being used by the implementation preserves the X Bit or not while staging.
- DOMAIN - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Signals that the traversal of the workflow is done.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Signals that the traversal of the workflow is done.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Signals that the traversal of the workflow is done.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
Prints out the bundles and chains that have been constructed.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Signals that the traversal of the workflow is done.
- done() - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Signals that the traversal of the workflow is done.
- done() - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Signals that the traversal of the workflow is done.
- done(Callback) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Indicates that we are done with the partitioning.
- done(Callback) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Indicates that we are done with the traversal of the graph.
- doneStageIn(Map<String, Bundle.PoolTransfer>, Implementation, int, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Signals that the traversal of the workflow is done.
- doQuery() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
- doSet(Level) - Method in class edu.isi.pegasus.planner.client.RCClient
- doStatWithKickstart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Return a boolean indicating whether to turn the stat option for kickstart on or not.
- dotfiles - Variable in class edu.isi.pegasus.gridftp.ListCommand
- downLen - Variable in class edu.isi.pegasus.planner.provisioner.Node
- DOWNWARD_RANK - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the downward rank for a node.
- DROP_DATABASE_STMT - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
MySQL statement for checking for dropping database
- DSC() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
- DUMMY_CONCAT_JOB - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The name concatenating dummy job that ensures that Condor does not start staging in before the directories are created.
- DUMMY_CONCAT_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The prefix assigned to the concatenating dummy job that ensures that Condor does not start staging in before the directories are created.
- DUMMY_NODE_ID - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The id of the dummy root node added on the top of the graph.
- dvName - Variable in class edu.isi.pegasus.planner.classes.Job
-
The name of the derivation in Chimera that generated the job.
- dvNamespace - Variable in class edu.isi.pegasus.planner.classes.Job
-
The namespace to which the derivation is bound.
- dvVersion - Variable in class edu.isi.pegasus.planner.classes.Job
-
The version of the derivation.
- DynamicLoader - Class in edu.isi.pegasus.common.util
-
This class provides a dynamic class loading facility.
- DynamicLoader(String) - Constructor for class edu.isi.pegasus.common.util.DynamicLoader
E
- ec2 - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- Edge - Class in edu.isi.pegasus.planner.dax
- Edge - Class in edu.isi.pegasus.planner.provisioner
-
An instance of this class represent an edge of workflow which is data dependencies between two tasks.
- Edge(Edge) - Constructor for class edu.isi.pegasus.planner.dax.Edge
- Edge(Node, Node, String, long) - Constructor for class edu.isi.pegasus.planner.provisioner.Edge
-
Constructor
- Edge(String, String) - Constructor for class edu.isi.pegasus.planner.dax.Edge
- Edge(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Edge
- edgeList2Graph(ADag, Map) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
Returns an adjacency list representation of the graph referred to by the list of edges.
- edgeList2Graph(Collection<PCRelation>, Map) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
Deprecated.as part of PM-747
- edges - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- edgeToDOT(Writer, String, String, String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the DOT description of the object.
- edu.isi.ikcap.workflows.util.logging - package edu.isi.ikcap.workflows.util.logging
- edu.isi.pegasus.common.credential - package edu.isi.pegasus.common.credential
- edu.isi.pegasus.common.credential.impl - package edu.isi.pegasus.common.credential.impl
- edu.isi.pegasus.common.logging - package edu.isi.pegasus.common.logging
- edu.isi.pegasus.common.logging.format - package edu.isi.pegasus.common.logging.format
- edu.isi.pegasus.common.logging.logger - package edu.isi.pegasus.common.logging.logger
- edu.isi.pegasus.common.util - package edu.isi.pegasus.common.util
- edu.isi.pegasus.gridftp - package edu.isi.pegasus.gridftp
- edu.isi.pegasus.planner.catalog - package edu.isi.pegasus.planner.catalog
- edu.isi.pegasus.planner.catalog.classes - package edu.isi.pegasus.planner.catalog.classes
- edu.isi.pegasus.planner.catalog.replica - package edu.isi.pegasus.planner.catalog.replica
- edu.isi.pegasus.planner.catalog.replica.impl - package edu.isi.pegasus.planner.catalog.replica.impl
- edu.isi.pegasus.planner.catalog.site - package edu.isi.pegasus.planner.catalog.site
- edu.isi.pegasus.planner.catalog.site.classes - package edu.isi.pegasus.planner.catalog.site.classes
- edu.isi.pegasus.planner.catalog.site.impl - package edu.isi.pegasus.planner.catalog.site.impl
- edu.isi.pegasus.planner.catalog.site.impl.old - package edu.isi.pegasus.planner.catalog.site.impl.old
- edu.isi.pegasus.planner.catalog.site.impl.old.classes - package edu.isi.pegasus.planner.catalog.site.impl.old.classes
- edu.isi.pegasus.planner.catalog.transformation - package edu.isi.pegasus.planner.catalog.transformation
- edu.isi.pegasus.planner.catalog.transformation.classes - package edu.isi.pegasus.planner.catalog.transformation.classes
- edu.isi.pegasus.planner.catalog.transformation.client - package edu.isi.pegasus.planner.catalog.transformation.client
- edu.isi.pegasus.planner.catalog.transformation.impl - package edu.isi.pegasus.planner.catalog.transformation.impl
- edu.isi.pegasus.planner.catalog.transformation.mapper - package edu.isi.pegasus.planner.catalog.transformation.mapper
- edu.isi.pegasus.planner.catalog.work - package edu.isi.pegasus.planner.catalog.work
- edu.isi.pegasus.planner.classes - package edu.isi.pegasus.planner.classes
- edu.isi.pegasus.planner.client - package edu.isi.pegasus.planner.client
- edu.isi.pegasus.planner.cluster - package edu.isi.pegasus.planner.cluster
- edu.isi.pegasus.planner.cluster.aggregator - package edu.isi.pegasus.planner.cluster.aggregator
- edu.isi.pegasus.planner.code - package edu.isi.pegasus.planner.code
- edu.isi.pegasus.planner.code.generator - package edu.isi.pegasus.planner.code.generator
- edu.isi.pegasus.planner.code.generator.condor - package edu.isi.pegasus.planner.code.generator.condor
- edu.isi.pegasus.planner.code.generator.condor.style - package edu.isi.pegasus.planner.code.generator.condor.style
- edu.isi.pegasus.planner.code.gridstart - package edu.isi.pegasus.planner.code.gridstart
- edu.isi.pegasus.planner.common - package edu.isi.pegasus.planner.common
- edu.isi.pegasus.planner.dax - package edu.isi.pegasus.planner.dax
- edu.isi.pegasus.planner.dax.examples - package edu.isi.pegasus.planner.dax.examples
- edu.isi.pegasus.planner.invocation - package edu.isi.pegasus.planner.invocation
- edu.isi.pegasus.planner.namespace - package edu.isi.pegasus.planner.namespace
- edu.isi.pegasus.planner.namespace.aggregator - package edu.isi.pegasus.planner.namespace.aggregator
- edu.isi.pegasus.planner.parser - package edu.isi.pegasus.planner.parser
- edu.isi.pegasus.planner.parser.dax - package edu.isi.pegasus.planner.parser.dax
- edu.isi.pegasus.planner.parser.pdax - package edu.isi.pegasus.planner.parser.pdax
- edu.isi.pegasus.planner.parser.tokens - package edu.isi.pegasus.planner.parser.tokens
- edu.isi.pegasus.planner.partitioner - package edu.isi.pegasus.planner.partitioner
- edu.isi.pegasus.planner.partitioner.graph - package edu.isi.pegasus.planner.partitioner.graph
- edu.isi.pegasus.planner.provenance.pasoa - package edu.isi.pegasus.planner.provenance.pasoa
- edu.isi.pegasus.planner.provenance.pasoa.pps - package edu.isi.pegasus.planner.provenance.pasoa.pps
- edu.isi.pegasus.planner.provenance.pasoa.producer - package edu.isi.pegasus.planner.provenance.pasoa.producer
- edu.isi.pegasus.planner.provisioner - package edu.isi.pegasus.planner.provisioner
- edu.isi.pegasus.planner.ranking - package edu.isi.pegasus.planner.ranking
- edu.isi.pegasus.planner.refiner - package edu.isi.pegasus.planner.refiner
- edu.isi.pegasus.planner.refiner.cleanup - package edu.isi.pegasus.planner.refiner.cleanup
- edu.isi.pegasus.planner.refiner.createdir - package edu.isi.pegasus.planner.refiner.createdir
- edu.isi.pegasus.planner.selector - package edu.isi.pegasus.planner.selector
-
Provides the interface and call-out to the site selector mechanism.
- edu.isi.pegasus.planner.selector.replica - package edu.isi.pegasus.planner.selector.replica
- edu.isi.pegasus.planner.selector.site - package edu.isi.pegasus.planner.selector.site
- edu.isi.pegasus.planner.selector.site.heft - package edu.isi.pegasus.planner.selector.site.heft
- edu.isi.pegasus.planner.selector.transformation - package edu.isi.pegasus.planner.selector.transformation
- edu.isi.pegasus.planner.transfer - package edu.isi.pegasus.planner.transfer
- edu.isi.pegasus.planner.transfer.implementation - package edu.isi.pegasus.planner.transfer.implementation
- edu.isi.pegasus.planner.transfer.mapper - package edu.isi.pegasus.planner.transfer.mapper
- edu.isi.pegasus.planner.transfer.mapper.impl - package edu.isi.pegasus.planner.transfer.mapper.impl
- edu.isi.pegasus.planner.transfer.refiner - package edu.isi.pegasus.planner.transfer.refiner
- edu.isi.pegasus.planner.transfer.sls - package edu.isi.pegasus.planner.transfer.sls
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Boot
-
The element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.CPU
-
The element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Load
-
The element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Machine
-
element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Proc
-
The element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.RAM
-
The element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Stamp
-
The element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Swap
-
The element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Task
-
The element name
- ELEMENT_NAME - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The element name
- Empty - Class in edu.isi.pegasus.planner.provenance.pasoa.pps
-
The default empty implementation to be used.
- Empty - Class in edu.isi.pegasus.planner.transfer.refiner
-
An Empty implementation for performance evaluation purposes
- Empty() - Constructor for class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
- Empty(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Empty
-
The overloaded constructor.
- EMPTY_FINAL_WORKFLOW_MESSAGE - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The final successful message that is to be logged.
- EMPTY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The key value is empty .
- EmptyIterator() - Constructor for class edu.isi.pegasus.planner.namespace.Namespace.EmptyIterator
- emptyKey(String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Deletes the key from the namespace.
- enable(AggregatedJob, boolean) - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Enables a job to run on the grid.
- enable(AggregatedJob, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Enables a constituentJob to run on the grid.
- enable(AggregatedJob, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Enables a job to run on the grid.
- enable(AggregatedJob, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Enables a job to run on the grid.
- enable(AggregatedJob, Collection) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Enables a collection of jobs and puts them into an AggregatedJob.
- enable(Job, boolean) - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Enables a job to run on the grid.
- enable(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Enables a constituentJob to run on the grid by launching it through kickstart.
- enable(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Enables a job to run on the grid by launching it directly.
- enable(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Enables a job to run on the grid by launching it directly.
- enable(Job, boolean, boolean, boolean, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Enables a constituentJob to run on the grid by launching it through kickstart.
- enableForWorkerNodeExecution(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Enables jobs for worker node execution.
- encode(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Transforms a given string by encoding single whitespace with the escape character set ( defaults to + ), and escapes the escape itself
- END_POSTFIX - Static variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
- endDocument() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- endDocument() - Method in class edu.isi.pegasus.planner.client.DAXValidator
- endDocument() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- endDocument() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Here we have all the elements in our data structure.
- endDocument() - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
The parser comes to the end of the document.
- endDocument() - Method in class edu.isi.pegasus.planner.parser.Parser
-
This is called automatically when the end of the XML file is reached.
- endDocument() - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
This is called automatically when the end of the XML file is reached.
- endDocument() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
Sets the boolean indicating parsing is done
- endDocument() - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
- endElement() - Method in class edu.isi.pegasus.common.util.XMLWriter
- endElement(int) - Method in class edu.isi.pegasus.common.util.XMLWriter
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Overrides the default implementation when the elements end tag comes.
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
The parser is at the end of an element.
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.Parser
-
An empty implementation is provided by DefaultHandler class.
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
An empty implementation is provided by DefaultHandler class.
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
An empty implementation
- endElement(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
The parser is at the end of an element.
- endPrefixMapping(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Out of the reach of the prefix, remove it from the HashMap.
- endWorkflowRefinementStep(Refiner) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
endWorkflowRefinementStep
- endWorkflowRefinementStep(Refiner) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- ENGAGE_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The name of the ENGAGE VO
- Engine - Class in edu.isi.pegasus.planner.refiner
-
The class which is a superclass of all the various Engine classes.
- Engine(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.Engine
-
A pratically nothing constructor !
- enter(String, String) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Adds a preference to the instance preferences settings.
- entryIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns an iterator to SiteCatalogEntry objects in the store.
- entryNotInTC(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Determines whether there is NOT an entry in the transformation catalog for the job aggregator executable on a particular site.
- entryNotInTC(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Determines whether there is NOT an entry in the transformation catalog for the job aggregator executable on a particular site.
- entryNotInTC(String) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Determines whether there is NOT an entry in the transformation catalog for the job aggregator executable on a particular site.
- entryNotInTC(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Determines whether there is NOT an entry in the transformation catalog for a particular transformation on a particular site.
- env - edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- env - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- env - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- ENV - Class in edu.isi.pegasus.planner.namespace
-
The environment namespace, that puts in the environment variables for the transformation that is being run, through Condor.
- ENV - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- ENV - Static variable in class edu.isi.pegasus.planner.classes.Profile
- ENV() - Constructor for class edu.isi.pegasus.planner.namespace.ENV
-
The default constructor.
- ENV(Map) - Constructor for class edu.isi.pegasus.planner.namespace.ENV
-
The overloaded constructor.
- EnvEntry - Class in edu.isi.pegasus.planner.invocation
-
This class pushes an environmental entry into the environment map.
- EnvEntry() - Constructor for class edu.isi.pegasus.planner.invocation.EnvEntry
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- EnvEntry(String) - Constructor for class edu.isi.pegasus.planner.invocation.EnvEntry
-
C'tor: Prepares a given key for accepting a value later on.
- EnvEntry(String, String) - Constructor for class edu.isi.pegasus.planner.invocation.EnvEntry
-
C'tor: Fully initializes the class
- Environment - Class in edu.isi.pegasus.planner.invocation
-
This class maintains the application that was run, and the arguments to the commandline that were actually passed on to the application.
- Environment() - Constructor for class edu.isi.pegasus.planner.invocation.Environment
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- envVariables - Variable in class edu.isi.pegasus.planner.classes.Job
-
To accomodate the environment variables which might needed to be set.
- equals(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Compares two catalog entries for equality.
- equals(Object) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Check if the system information matches.
- equals(Object) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Matches two ReplicaCatalogEntry objects.
- equals(Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Checks if an object is similar to the one referred to by this class.
- equals(Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Checks if an object is similar to the one referred to by this class.
- equals(Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
Compares if a given Arch object is equal to this.
- equals(Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
Compares if a given Os object is equal to this.
- equals(Object) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Check if the system information matches.
- equals(Object) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns whether two objects are equal or not on the basis of the complete name of the transformation.
- equals(Object) - Method in class edu.isi.pegasus.planner.classes.Job
-
Checks if an object is similar to the one referred to by this class.
- equals(Object) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Checks if an object is similar to the one referred to by this class.
- equals(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Checks if an object is similar to the one referred to by this class.
- equals(Object) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- equals(Object) - Method in class edu.isi.pegasus.planner.dax.Edge
- equals(Object) - Method in class edu.isi.pegasus.planner.dax.Executable
- equals(Object) - Method in class edu.isi.pegasus.planner.dax.File
-
Check if this File is equal to Object o
- equals(Object) - Method in class edu.isi.pegasus.planner.dax.Transformation
- equals(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Matches two GraphNode objects.
- equals(Object) - Method in class edu.isi.pegasus.planner.provisioner.Node
- equals(Object) - Method in class edu.isi.pegasus.planner.ranking.Ranking
- err - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- err - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- ERR_SUCCESS_MSG_DELIMITER - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The delimiter used for delimited error and success message internally
- error(SAXParseException) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- error(SAXParseException) - Method in class edu.isi.pegasus.planner.parser.XMLErrorHandler
-
Logs the error messages which SAX parser generates while validating the XML file against an XML Schema
- ERROR_MESSAGE_AGGREGATOR - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
Static Handle to the delimiter aggregator.
- ERROR_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate an ERROR message.
- ERROR_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate an ERROR message.
- errorMessage(Job, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Constructs an error message in case of style mismatch.
- escape - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- escape(String) - Method in class edu.isi.ikcap.workflows.util.logging.Escape
-
Transforms a given string by escaping all characters inside the quotable characters set with the escape character.
- escape(String) - Method in class edu.isi.pegasus.common.util.Escape
-
Transforms a given string by escaping all characters inside the quotable characters set with the escape character.
- escape(String) - Static method in class edu.isi.pegasus.common.util.XMLOutput
-
Escapes certain characters inappropriate for textual output.
- escape(String) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Escapes quotes and backslashes by backslashing them.
- Escape - Class in edu.isi.ikcap.workflows.util.logging
-
This class tries to define an interface to deal with quoting, escaping, and the way back.
- Escape - Class in edu.isi.pegasus.common.util
-
This class tries to define an interface to deal with quoting, escaping, and the way back.
- Escape() - Constructor for class edu.isi.ikcap.workflows.util.logging.Escape
-
Defines the default quoting and escaping rules, escaping the apostrophe, double quote and backslash.
- Escape() - Constructor for class edu.isi.pegasus.common.util.Escape
-
Defines the default quoting and escaping rules, escaping the apostrophe, double quote and backslash.
- Escape(String, char) - Constructor for class edu.isi.ikcap.workflows.util.logging.Escape
-
Constructs arbitrary escaping rules.
- Escape(String, char) - Constructor for class edu.isi.pegasus.common.util.Escape
-
Constructs arbitrary escaping rules.
- Escape(String, char, boolean) - Constructor for class edu.isi.ikcap.workflows.util.logging.Escape
-
Constructs arbitrary escaping rules.
- escapeXML(String) - Static method in class edu.isi.pegasus.common.util.XMLWriter
- ESSENTIAL_POST_SCRIPT_SCOPE - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The postscript mode in which post scripts are added only for essential jobs.
- estimate() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
-
Estimate the number of processors and return the value.
- Estimator - Class in edu.isi.pegasus.planner.provisioner
-
This Estimator is used to find the near-optimal number of processors required to complete workflow within a given RFT(requested finish time).
- Estimator(String, String, long, int) - Constructor for class edu.isi.pegasus.planner.provisioner.Estimator
-
Constructor
- evalWeight() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return execution time of this task
- Event - Interface in edu.isi.pegasus.common.logging
- EVENT_DC_ADD_DATASOURCE_LOCATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_AUGMENT_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_CHARACTERIZE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_CHARACTERIZE_STATUS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_CHARACTERIZE_STATUSES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_DATASOURCE_EXISTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_DISSEMINATE_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_ALL_DATASOURCES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_ALL_METRICS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_AUGMENTED_TYPES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_DATASOURCE_DESCRIPTION_FOR_UUID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_DATASOURCE_LOCATIONS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_DATASOURCE_UUID_FOR_DESCRIPTION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_DATASOURCES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_DMO_METRICS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_INGEST_STATUS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_INGEST_TIME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_SATURATED_TYPES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_GET_UNCHARACTERIZED_DATASOURCES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_INGEST_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_REGISTER_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_REMOVE_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_REMOVE_DATASOURCE_LOCATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_RICH_CHARACTERIZE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_SATURATE_DATASOURCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_SET_DATASOURCE_DESCRIPTION_FOR_UUID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_DC_UPDATE_INGEST_MAP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_ENSEMBLE_EXECUTE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_ENSEMBLE_PLANNING - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_ENSEMBLE_RANKING - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_ENSEMBLE_WG - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_ID_KEY - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_ID_KEY - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_INFER_TEMPLATE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_KW - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- EVENT_PEGASUS_ADD_DATA_DEPENDENCIES - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_ADD_TRANSFER_NODES - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_ADDCLEANUP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_PEGASUS_ADDDATASTAGING - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_PEGASUS_ADDREGISTRATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_PEGASUS_AUTHENTICATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_CLUSTER - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_PEGASUS_CLUSTER - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_CODE_GENERATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_GENERATE_CLEANUP - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_GENERATE_CLEANUP_WF - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_GENERATE_WORKDIR - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_GENERATECLEANUP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_PEGASUS_LOAD_DIRECTORY_CACHE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_LOAD_TRANSIENT_CACHE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_PARSE_DAX - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_PARSE_PDAX - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_PARSE_SITE_CATALOG - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_PARTITION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_PLAN - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_PEGASUS_PLAN - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_RANKING - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_RANKING_RETRIEVE_DAX - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_REDUCE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_PEGASUS_REDUCE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_REFINEMENT - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_PEGASUS_SITESELECTION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_PEGASUS_SITESELECTION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_QUERY_DATACATALOG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_QUERY_DATACATALOG - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_QUERY_PROCESSCATALOG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_QUERY_PROCESSCATALOG - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENT_RANKING - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_BACKWARD_SWEEP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_CONFIGURE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_DATA_SELECTION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_FETCH_METRICS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_FORWARD_SWEEP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_GET_CANDIDATE_SEEDS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_GET_DAX - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_INITIALIZE_DC - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_INITIALIZE_PC - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_LOAD_SEED - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WG_SPECIALIZE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- EVENT_WORKFLOW_JOB_STATUS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EventLogMessage - Class in edu.isi.ikcap.workflows.util.logging
-
This is a modification of gov.lbl.netlogger.LogMessage This class lets you easily construct a set of typed (name, value) pairs that formats itself as a CEDPS Best Practices log message.
- EventLogMessage(String) - Constructor for class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Create a new LogMessage at the current time with a given event name.
- EventLogMessage.Log4jFilter - Class in edu.isi.ikcap.workflows.util.logging
-
In log4j, ignore all messages not specifically directed at this appender.
- EVENTS_PEGASUS_CODE_GENERATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- EVENTS_PEGASUS_STAMPEDE_GENERATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- examined - Variable in class edu.isi.pegasus.planner.provisioner.Node
- ExampleDAXCallback - Class in edu.isi.pegasus.planner.parser.dax
-
An example callback that prints out the various elements in the DAX.
- ExampleDAXCallback() - Constructor for class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
- executable - Variable in class edu.isi.pegasus.planner.classes.Job
-
The path of the executable on the machine at which the job is executed.
- Executable - Class in edu.isi.pegasus.planner.client
-
The interface which defines all the methods , any executable should implement.
- Executable - Class in edu.isi.pegasus.planner.dax
-
The Transformation Catalog object the represent the entries in the DAX transformation section.
- Executable() - Constructor for class edu.isi.pegasus.planner.client.Executable
-
The default constructor.
- Executable(LogManager) - Constructor for class edu.isi.pegasus.planner.client.Executable
-
The constructor which ends up initialising the PegasusProperties object.
- Executable(Executable) - Constructor for class edu.isi.pegasus.planner.dax.Executable
-
Copy Constructor
- Executable(String) - Constructor for class edu.isi.pegasus.planner.dax.Executable
-
Create a new executable
- Executable(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Executable
-
Create a new Executable
- EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
The basename of the executable that is able to run multiple jobs via mpi.
- EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
The basename of the pegasus cluster executable.
- EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The basename of the kickstart executable.
- EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The basename of the pegasus cleanup executable.
- EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The basename of the pegasus cleanup executable.
- EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The executable basename for the transfer executable.
- EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The executable basename
- EXECUTABLE_FILE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The type denoting that a logical file is a executable file.
- EXECUTABLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that denotes the executable of the job.
- EXECUTABLE_TYPE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The string value of a file that is of type executable.
- Executable.ARCH - Enum in edu.isi.pegasus.planner.dax
-
ARCH Types
- Executable.OS - Enum in edu.isi.pegasus.planner.dax
-
OS Types
- execute(String[]) - Static method in class edu.isi.pegasus.gridftp.PegasusGridFTP
- execute(List<GridFTPURL>) - Method in class edu.isi.pegasus.gridftp.Command
- executeCommand() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Executes the command on the basis of the options specified.
- executeCommand() - Method in class edu.isi.pegasus.planner.client.PartitionDAX
-
Executes the partition dax on the basis of the options given by the user.
- executeCommand() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Executes the command on the basis of the command line options passed.
- executeCommand() - Method in class edu.isi.pegasus.planner.client.RankDAX
-
Executes the command on the basis of the options specified.
- executeCommand() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Call the correct commands depending on options.
- executeCommand() - Method in class edu.isi.pegasus.planner.client.TCClient
-
Call the correct commands depending on options.
- executeCommand() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Call the correct commands depending on options.
- executeCommand() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Executes the command on the basis of the options specified.
- executeCommand(PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Executes the command on the basis of the options specified.
- executeOnWorkerNode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to have jobs executing on worker node tmp or not.
- EXECUTION_POOL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Hints
-
The execution pool key
- executionPool - Variable in class edu.isi.pegasus.planner.classes.Job
-
The pool on which this job has been decided to be executed by the Interpool Engine.
- executionToHintsNamespace(String) - Static method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Maps the execution key to corresponding key in hints namespace.
- exists(String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
Return true if path exists, false otherwise
- ExitCode - Class in edu.isi.pegasus.planner.client
-
This class gets the exit code of a job from invocation record.
- ExitCode(String) - Constructor for class edu.isi.pegasus.planner.client.ExitCode
-
ctor: Constructs a new instance object with the given application name.
- EXITCODE_FAILURE_MESSAGE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The message to look for while detecting failures condor job's stdout/stderr
- EXITCODE_SUCCESS_MESSAGE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
the message to look for while detecting success in condor job's stdout/stderr
- extractToMemory(File) - Method in class edu.isi.pegasus.planner.invocation.SimpleServer
-
Copy the content of the file into memory.
- extractVersionFromSchema(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Determines the version of the DAX as specified in a schema string.
F
- FactoryException - Exception in edu.isi.pegasus.common.util
-
The base exception class to notify of errors, while instantiating classes via any of the factories.
- FactoryException(String) - Constructor for exception edu.isi.pegasus.common.util.FactoryException
-
Constructs a
FactoryException
with no detail message. - FactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.util.FactoryException
-
Constructs a
FactoryException
with the specified detailed message. - FactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.util.FactoryException
-
Constructs a
FactoryException
with the specified detailed message and a cause. - FactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.util.FactoryException
-
Constructs a
FactoryException
with the specified detailed message and a cause. - FAKE_DATE - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- FALSE - edu.isi.pegasus.planner.dax.File.TRANSFER
- FALSE - Static variable in class edu.isi.pegasus.common.util.Boolean
-
The character representation of a
false
value. - FATAL_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a FATAL error message.
- FATAL_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a FATAL error message.
- fatalError(SAXParseException) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- fatalError(SAXParseException) - Method in class edu.isi.pegasus.planner.parser.XMLErrorHandler
-
Logs the the fatal messages which SAX parser generates while validating the XML file against an XML Schema
- Fifo - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for a FIFO object.
- Fifo() - Constructor for class edu.isi.pegasus.planner.invocation.Fifo
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- Fifo(String, int) - Constructor for class edu.isi.pegasus.planner.invocation.Fifo
-
Constructs a FIFO object.
- file - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- file - Variable in class edu.isi.pegasus.planner.client.TCClient
- File - Class in edu.isi.pegasus.planner.catalog.transformation.impl
-
This is the new file based TC implementation storing the contents of the file in memory.
- File - Class in edu.isi.pegasus.planner.dax
-
This class is the container for any File object, either the RC section, or uses
- File - Class in edu.isi.pegasus.planner.invocation
-
This class is the base class for a file object.
- File() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.File
- File() - Constructor for class edu.isi.pegasus.planner.invocation.File
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- File(File) - Constructor for class edu.isi.pegasus.planner.dax.File
-
Copy constructor
- File(File, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File
-
Copy constructor, but change the linkage of the file.
- File(String) - Constructor for class edu.isi.pegasus.planner.dax.File
-
Create new file object
- File(String) - Constructor for class edu.isi.pegasus.planner.invocation.File
-
C'tor: Constructs the value in the base class.
- File(String, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File
-
Create new file object
- File(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.File
-
Create new File object
- File(String, String, String, File.LINK) - Constructor for class edu.isi.pegasus.planner.dax.File
-
Create a new file object
- File() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The default constructor.
- FILE_DELIMITER - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
- FILE_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The File format.
- FILE_OUTPUT_CONTENTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- FILE_OUTPUT_CONTENTS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- FILE_OUTPUT_NAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- FILE_OUTPUT_NAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- FILE_PRIORTY - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- FILE_PRIORTY - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- FILE_SYSTEM_DOMAIN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that denotes the File System Domain.
- FILE_TYPE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- FILE_TYPE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- FILE_URL_SCHEME - Static variable in class edu.isi.pegasus.common.util.PegasusURL
-
The scheme name for file url.
- File.LINK - Enum in edu.isi.pegasus.planner.dax
-
The linkages that a file can be of
- File.TRANSFER - Enum in edu.isi.pegasus.planner.dax
-
Three Transfer modes supported, Transfer this file, don't transfer or stageout as well as optional.
- FileExistsException - Exception in edu.isi.pegasus.gridftp
- FileExistsException(String) - Constructor for exception edu.isi.pegasus.gridftp.FileExistsException
- FileExistsException(String, Throwable) - Constructor for exception edu.isi.pegasus.gridftp.FileExistsException
- FileInfo - Class in edu.isi.pegasus.gridftp
-
Stores information about a file or directory, such as its name, size, type, etc.
- FileInfo(String, String) - Constructor for class edu.isi.pegasus.gridftp.FileInfo
- fileName - Variable in class edu.isi.pegasus.planner.provisioner.Edge
- fileName - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- fileOptional() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns optional flag denoting the file to be optional or not.
- FileServer - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This class describes a file server that can be used to stage data to and from a site.
- FileServer() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileServer
-
The default constructor.
- FileServer(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileServer
-
Overloaded constructor.
- FileServerType - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An abstract class that describes a file server that can be used to stage data to and from a site.
- FileServerType() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The default constructor.
- FileServerType(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Overloaded constructor.
- FileServerType.OPERATION - Enum in edu.isi.pegasus.planner.catalog.site.classes
-
The operations supported by the file server
- fileSize - Variable in class edu.isi.pegasus.planner.provisioner.Edge
- FileSystemType - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An abstract class describing a filesystem type.
- FileSystemType() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
The default constructor.
- FileSystemType(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
The overloaded constructor.
- FileTransfer - Class in edu.isi.pegasus.planner.classes
-
This is a container for the storing the transfers that are required in between sites.
- FileTransfer() - Constructor for class edu.isi.pegasus.planner.classes.FileTransfer
-
Default constructor.
- FileTransfer(PegasusFile) - Constructor for class edu.isi.pegasus.planner.classes.FileTransfer
-
The overloaded constructor.
- FileTransfer(String, String) - Constructor for class edu.isi.pegasus.planner.classes.FileTransfer
-
The overloaded constructor.
- FileTransfer(String, String, BitSet) - Constructor for class edu.isi.pegasus.planner.classes.FileTransfer
-
The overloaded constructor.
- fillArgs(Map) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.Client
-
Takes the arguments from the TCClient and stores it for acess to the other TC Client modules.
- finalize() - Method in class edu.isi.pegasus.common.util.StreamGobbler
-
Closes the open connections to the streams whenever this object is destroyed.
- finalize() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Closes the connection to the rli.
- findExec(String) - Static method in class edu.isi.pegasus.common.util.FindExecutable
-
Finds the path to an executable of a given name , based on the value of PATH environment variable.
- FindExecutable - Class in edu.isi.pegasus.common.util
-
A convenice class that allows us to determine the path to an executable
- FindExecutable() - Constructor for class edu.isi.pegasus.common.util.FindExecutable
- findLCA(GraphNode, GraphNode) - Method in class edu.isi.pegasus.planner.refiner.ReduceEdges
-
We find LCA of from and to.
- Fixed - Class in edu.isi.pegasus.planner.transfer.mapper.impl
-
A convenience mapper implementation that stages output files to a fixed directory, specified using properties.
- Fixed() - Constructor for class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
The default constructor.
- Flat - Class in edu.isi.pegasus.planner.transfer.mapper.impl
-
Maps the output files to a flat directory on the output site.
- Flat() - Constructor for class edu.isi.pegasus.planner.transfer.mapper.impl.Flat
-
The default constructor.
- FLAT_LFN_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
the name of the key that specifies whether we want flat lfns or not.
- flush() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Check if the buffer is full i.e.
- FlushedCache - Class in edu.isi.pegasus.planner.catalog.replica.impl
-
This class implements a replica catalog which directly writes to the output file.
- FlushedCache() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- force - Variable in class edu.isi.pegasus.gridftp.RemoveCommand
- Fork - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
- FORK_JOBMANAGER_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The jobmanager type associated with the transfer jobs.
- format - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- FREE_MEM - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the free memory .
- FREE_SIZE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the free size.
- FREE_SIZE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The constant to be passed to the accessor functions to get or set the free space available.
- fromArguments(List<String>) - Static method in class edu.isi.pegasus.gridftp.ListCommand
- fromArguments(List<String>) - Static method in class edu.isi.pegasus.gridftp.MakeDirectoryCommand
- fromArguments(List<String>) - Static method in class edu.isi.pegasus.gridftp.RemoveCommand
- fromLongFormat(String) - Static method in class edu.isi.pegasus.gridftp.FileInfo
- fromMlsxEntry(MlsxEntry) - Static method in class edu.isi.pegasus.gridftp.FileInfo
- fromNode - Variable in class edu.isi.pegasus.planner.provisioner.Edge
- fromShortFormat(String) - Static method in class edu.isi.pegasus.gridftp.FileInfo
- fromString(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
Creates a new Arch object given a arch string.
- fromString(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
Creates a new Os object given an os string.
- fromValue(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
Creates a new Arch Object givan a arch string.
- fromValue(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
Creates a new Os object given an os string.
- ftToRC(FileTransfer) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Converts a
FileTransfer
to a RC compatible string representation. - full_where() - Method in class edu.isi.pegasus.planner.client.DAXValidator
- full_where() - Method in class edu.isi.pegasus.planner.parser.InvocationParser
- fullahead - edu.isi.pegasus.planner.common.PegasusProperties.CLEANUP_SCOPE
G
- generate(PrintWriter, ADag) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Writes out the classads for a workflow to corresponding writer stream.
- generate(PrintWriter, ADag, Job) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Writes out the classads for a job to corresponding writer stream.
- generate(String, String) - Method in class edu.isi.pegasus.planner.dax.examples.Diamond
- GENERATE_SUBDAG_KEYWORD - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Whether to generate the SUBDAG keyword or not.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
-
It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
- generateArgumentString(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
- generateArgumentStringAndAssociateCredentials(TransferJob, FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
- generateArgumentStringAndAssociateCredentials(TransferJob, FileTransfer) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
It constructs the arguments to the transfer executable that need to be passed to the executable referred to in this transfer mode.
- generateCallToCheckExitcode(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates a call to check_exitcode function that is used
- generateCallToExecuteJob(Job, String, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates a call to execute_job function , that is used to launch a job from the shell script.
- generateCallToExecutePostScript(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates a call to execute_post_script function , that is used to launch a job from the shell script.
- generateClassAdAttribute(String, int) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Generates a classad attribute given the name and the value.
- generateClassAdAttribute(String, String) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Generates a classad attribute given the name and the value.
- generateClassAdAttribute(String, String, boolean) - Static method in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
Generates a classad attribute given the name and the value.
- generateCleanupID(Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Returns the identifier that is to be assigned to cleanup job.
- generateClusteredJobID(String, int, int) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Generated an ID for a clustered cleanup job
- generateCode(ADag) - Method in interface edu.isi.pegasus.planner.code.CodeGenerator
-
Generates the code for the concrete workflow in the input format of the workflow executor being used.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Generates the code for the executable workflow in terms of a braindump file that contains workflow metadata useful for monitoring daemons etc.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Generates the code for the concrete workflow in Condor DAGMAN and CondorG input format.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Generates the notifications input file.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
Generates the notifications input file.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.PBS
-
Generates the code for the concrete workflow in the GRMS input format.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.PMC
-
Generates the code for the concrete workflow in the GRMS input format.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates the code for the concrete workflow in the GRMS input format.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Generates the code for the executable workflow in terms of a braindump file that contains workflow metadata useful for monitoring daemons etc.
- generateCode(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Generates the code for the concrete workflow in the input format of the workflow executor being used.
- generateCode(ADag, Job) - Method in interface edu.isi.pegasus.planner.code.CodeGenerator
-
Generates the code for a single job in the input format of the workflow executor being used.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Method not implemented.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Generates the code (condor submit file) for a single job.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Not implemented
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
Not implemented
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.PBS
-
Generates the code for a single job in the input format of the workflow executor being used.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.PMC
-
Generates the code for a single job in the input format of the workflow executor being used.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Generates the code for a single job in the input format of the workflow executor being used.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Method not implemented.
- generateCode(ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Generates the code for a single job in the Stork format.
- generateCode(ADag, Map<String, String>) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Generates the code for the executable workflow in terms of a braindump file that contains workflow metadata useful for monitoring daemons etc.
- generateCode(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Generates code for a job
- generateEventsForDAXTask(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Generates stampede events corresponding to jobs/tasks in the DAX
- generateEventsForExecutableJob(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Generates stampede events corresponding to an executable job
- generateFlowID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Generates the flow id for this current run.
- generateFlowID() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Generates the flow id for this current run.
- generateFlowName() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Generates the name of the flow.
- generateFlowName() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Generates the name of the flow.
- generateKickstartExtraOptions() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whehter to pass extra options to kickstart or not.
- generateList(String) - Method in class edu.isi.pegasus.planner.client.RankDAX
-
Generates a List by parsing a comma separated string.
- generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Writes out the list of filenames file for the constituentJob.
- generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Writes out the list of filenames file for the job.
- generateListofFilenamesFile(Set, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Writes out the list of filenames file for the job.
- generateLOFFiles() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Return a boolean indicating whether to generate the LOF files for the jobs or not.
- generateLogEvent(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
Generates a log event message in the netlogger format for a job
- generateLogFileSymlink(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
This method generates a symlink to the actual log file written in the local temp directory.
- generateMappingsFile(String, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Generates the registration mappings in a text file that is generated in the dax directory (the directory where all the condor submit files are generated).
- generateMask(int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Generates the appropriate mask value, corresponding to the level passed.
- generateName(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Generates a name for the job that serves as the primary id for the job
- generateName(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Generates a name for the job that serves as the primary id for the job
- generatePMCInputFile(Graph, String, boolean) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Writes out the input file for the aggregated job
- generateRandomDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns whether to generate a random directory or not.
- generateRandomDirectory() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns whether we want to create a Random Directory or not.
- generateRepJobArgumentString(SiteCatalogEntry, String, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Generates the argument string to be given to the replica registration job.
- generateSet(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Generates a Set by parsing a comma separated string.
- generateSRMProperties() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Generates SRM properties that can be used by Pegasus to do SRM URL substitution for the case where all the data is accessible on the worker nodes locally.
- generateSRMProperties(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Generates SRM properties that can be used by Pegasus to do SRM URL substitution for the case where all the data is accessible on the worker nodes locally for a particular site.
- generateStampedeEventsForAbstractWorkflow(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Generates events for the abstract workflow.
- generateTaskMapEvents(PrintWriter, ADag, Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Generates the task.map events that link the jobs in the DAX with the jobs in the executable workflow
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Tt generates the LongOpt which contain the valid options that the command will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.Executable
-
Generates an array of valid
LongOpt
objects which contain all the valid options to the Executable. - generateValidOptions() - Method in class edu.isi.pegasus.planner.client.ExitCode
-
Creates a set of options.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PartitionDAX
-
Tt generates the LongOpt which contain the valid options that the command will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Generates valid LongOpts.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.RankDAX
-
It generates the LongOpt which contain the valid options that the command will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Creates a set of GNU long options.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.SCClient
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.TCClient
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Generates the list of valid options for the tc-converter client
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Tt generates the LongOpt which contain the valid options that the command will accept.
- generateValidOptions() - Method in class edu.isi.pegasus.planner.client.VersionNumber
-
Creates a set of options.
- generateWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Generates the UUID for the workflow
- GENERATOR - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The name of the generator.
- GENERATOR_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The complete classad designating Pegasus as the generator.
- GENERATOR_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Key designating type of Pegasus Code Generator.
- get - edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
- get(int) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Returns a boolean indicating whether the attribute passed is set in the transfer state or not.
- get(int) - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Returns a boolean indicating whether the attribute passed is set in the transfer state or not.
- get(CredentialHandler.TYPE) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
Returns the implementation from the implementing class table.
- get(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the namespace object corresponding to a namespace
- get(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
Returns an objects corresponding to the key passed.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Returns the value to which this namespace maps the specified key.
- get(Object) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
It returns the value associated with the key in the map.
- get(Object) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Bag
-
Returns an objects corresponding to the key passed.
- get(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Returns an objects corresponding to the key passed.
- get(Object) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
It returns the value associated with the key in the map.
- get(Object) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
For all keys returns the boolean value
- get(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
Returns an objects corresponding to the key passed.
- get(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Retrives the information about a site.
- get(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns an entry corresponding to the LFN
- get(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
Returns the implementation from the implementing class table.
- get(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
Returns the implementation from the implementing class table.
- get(String) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Retrieves the value for a given key
- get(String) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Returns attribute value for a key
- get(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Returns the
GraphNode
of the corresponding id. - get(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns the TPT state for a particular site.
- get(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns the TPT state for a particular site.
- get(String, String) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Given a request ID it fetches the DAX's from the DB and writes out to the directory passed.
- GET_ENV_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor key for using the local environment
- getAbsolutePath(Partition, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the absolute path to a dagman (usually) related file for a particular partition in the submit directory that is passed as an input parameter.
- getAbstractChildID() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the abstract child id associated with the edge.
- getAbstractJob(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns an abstract Job with id ajobid if present otherwise null.
- getAbstractParentID() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the abstract parent id associated with the edge.
- getAbstractWorkflowName() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the workflow id
- getAccessTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns a Map containing additional metrics entries that are specific to a Code Generator
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a Map containing additional braindump entries that are specific to a Code Generator.
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.PBS
-
Returns a Map containing additional braindump entries that are specific to a Code Generator
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.PMC
-
Returns a Map containing additional braindump entries that are specific to a Code Generator.
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns a Map containing additional braindump entries that are specific to a Code Generator
- getAdditionalBraindumpEntries(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Returns an empty map
- getAliasIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns an iterator to aliases associated with the site.
- getAllEntries() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns all the entries in the Transformation Store
- getAllIgnoredSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a comma separated list of sites, from which to ignore data transfers for all sites.
- getAllPreferredSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a comma separated list of sites, from which to prefer data transfers for all sites.
- getAncET() - Method in class edu.isi.pegasus.planner.provisioner.Node
- getAncSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
- getApplicationMetrics() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the application specific metrics that will be forwarded to the server
- getArch() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Returns the architecture of the sytem.
- getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the architecture of the site.
- getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the architecture of the nodes that this grid gateway talks to.
- getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the architecture of the site.
- getArchitecture() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the architecture of the site.
- getArchitecture() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the architecture the Executable is compiled for
- getArchitecture() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getArchMode() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getArguments() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the argument string with which the job has to be invoked.
- getArguments() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Return the argument List.
- getArguments() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getAssociatedCreateDirSite(Job) - Method in class edu.isi.pegasus.planner.refiner.createdir.Minimal
-
Returns the associated site that job is dependant on.
- getAssociatedCreateDirSite(Job) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Returns the associated site that job is dependant on.
- getAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Obtains the attribute value for a given key.
- getAttributeCount() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Counts the number of attributes known for the PFN.
- getAttributeIterator() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Provides an iterator to traverse the attributes by their keys.
- getAttributeKeysIterator() - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Returns Iterator for attribute keys.
- getAuthenticateRequest() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
Returns an authentication request to the worker thread.
- getAvailableProcessors() - Method in class edu.isi.pegasus.planner.selector.site.heft.Site
-
Returns the number of available processors.
- getAvailableTime(long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Processor
-
Returns the earliest time the processor is available for scheduling a job.
- getAvailableTime(long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Site
-
Returns the earliest time the site is available for scheduling a job.
- getAvailableTime(String, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Returns the available time for a site.
- getBag() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the bag of objects associated with the node.
- getBasename(Partition, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the basename of a dagman (usually) related file for a particular partition.
- getBasename(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns the basename of the URL using substring.
- getBasename(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
A covenience method to construct the basename.
- getBasename(String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns the basename of a dagman (usually) related file for a particular partition.
- getBaseName(Partition) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the base name of the submit directory in which the submit files for a particular partition reside.
- getBaseName(String) - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
returns the basename of the credential file name
- getBaseName(String) - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
returns the basename of the path to the local credential
- getBaseName(String) - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
returns the basename of the path to the local credential
- getBaseName(String) - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
returns the basename of the path to the local credential
- getBaseName(String) - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
returns the basename of the path to the local credential
- getBasenamePrefix() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the basename prefix for the per workflow files that are to be generated by the planner.
- getBasenamePrefix(Job) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the basename prefix of a dagman (usually) related file for a a job that submits nested dagman.
- getBaseSourceURLForSetupTransfers() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the base source URL where pointing to the directory where the worker package executables for pegasus releases are kept.
- getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the root of submit directory hierarchy for the workflow.
- getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the path to the base submit directory.
- getBaseSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the base submit directory
- getBinDir() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor pegasus bin directory
- getBinDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor to the bin directory of the Pegasus install
- getBinPackingComparator() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
The comparator is used to sort a collection of jobs in decreasing order of their run times as specified by the Pegasus.JOB_RUN_TIME property.
- getBlocks() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getBlockSize() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getBooleanValue() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
Returns the boolean value
- getBooleanValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a boolean value, that a particular key is mapped to in this namespace.
- getBooleanValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns a boolean value, that a particular key is mapped to in this namespace.
- getCacheFile(PlannerOptions, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns the path to the cache file in a workflow's submit directory
- getCacheFileName(ADag) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Constructs the basename to the cache file that is to be used to log the transient files.
- getCacheFileName(ADag, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.classes.PlannerCache
-
Constructs the basename to the cache file that is to be used to log the transient files.
- getCacheFileName(PlannerOptions, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs the basename to the cache file that is to be used to log the transient files.
- getCacheFilePath(Job) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the full path to a cache file that corresponds for one partition.
- getCacheFiles() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the cache files.
- getCacheFiles() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
It returns the set of cache files.
- getCategoryDAGManKnobs(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Write out the DAGMan knobs for each category the user mentions in the properties.
- getCERequirementsForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Constructs the value for remote CE requirements expression for the job .
- getChild() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the child in the edge.
- getChild() - Method in class edu.isi.pegasus.planner.dax.Edge
- getChildren() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns a list of
GraphNode
objects that are children of the node. - getChmodDisabledSites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the list of sites for which the chmod job creation has to be disabled for executable staging.
- getClassname() - Method in exception edu.isi.pegasus.common.util.FactoryException
-
Returns the name of the class that was trying to be loaded when this error occured, or some other signifier like a module name.
- getClassName() - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Obtains the fully-qualified class name that this instance works with.
- getClassPath(String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns the classpath for the default rc-client entry.
- getCleanup() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the option indicating whether to do cleanup or not.
- getCleanupDAG() - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
Returns the cleanup dag for the concrete dag.
- getCleanupImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the class that the user wants, to render the cleanup jobs.
- getCleanupJobname(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It returns the name of the untar job, that is to be assigned.
- getCleanupScope() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the scope for file cleanup.
- getCleanupStrategy() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the Strategy class that the user wants, to insert the cleanup jobs in the graph.
- getClusteredDAG() - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the clustered workflow.
- getClusteredDAG() - Method in interface edu.isi.pegasus.planner.cluster.Clusterer
-
Returns the clustered workflow.
- getClusteredDAG() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns the clustered workflow.
- getClustererLabelKey() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the key that is to be used as a label key, for labelled clustering.
- getClusterExecutableBasename() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Returns the executable basename of the clustering executable used.
- getClusterExecutableBasename() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns the executable basename of the clustering executable used.
- getClusterExecutableBasename() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Returns the executable basename of the clustering executable used.
- getClusterExecutableLFN() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Returns the logical name of the transformation that is used to collapse the jobs.
- getClusterExecutableLFN() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns the logical name of the transformation that is used to collapse the jobs.
- getClusterExecutableLFN() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Returns the logical name of the transformation that is used to collapse the jobs.
- getClusteringTechnique() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the clustering technique to be used for clustering.
- getClusterSize(int) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Returns the number of cleanup jobs clustered into one job per level.
- getClusterSizeCleanupJobsPerLevel() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the fraction of cleanup jobs clustered into a single clustered cleanup job.
- getCode() - Method in class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- getCollapseFactor(String, int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Returns the collapse factor, that is used to determine the number of nodes going in a partition.
- getCollapseFactor(String, Job, int) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns the collapse factor, that is used to chunk up the jobs of a particular type on a pool.
- getCollapseFactors() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a comma separated list for the node collapsing criteria for the execution pools.
- getCommandLineOptions() - Method in class edu.isi.pegasus.planner.client.Executable
-
Returns the command line arguments passed to the executable
- getCommandLineProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns the properties that need to be passed to the the rc-client invocation on the command line .
- getCommentString(Job, int) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Generates the comment string for the job .
- getCompleteDVName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Constructs the fully qualified name of the corresponding derivation used to generate this job in Chimera including the namespace and version.
- getCompleteName() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns the complete name for the transformation.
- getCompleteOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the complete options string that is used to invoke pegasus
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Constructs the fully qualified name of a transformation with which to query the TC, including the namespace and version.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the complete name for the transformation that the implementation is using..
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Returns the complete name for the transformation that the implementation is using.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the complete name for the transformation.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns the complete name for the transformation.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the complete name for the transformation.
- getCompleteTCName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the complete name for the transformation.
- getCompleteTranformationName() - Static method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
A convenience method to return the complete transformation name being used to construct jobs in this class.
- getCompleteTranformationName() - Static method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
A convenience method to return the complete transformation name being used to construct jobs in this class.
- getCompleteTranformationName(String) - Static method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
A convenience method to return the complete transformation name being used to construct jobs in this class.
- getComputeJobBundleValue(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Returns the bundle value associated with a compute job as a String.
- getComputeJobBundleValue(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Returns the bundle value associated with a compute job as a String.
- getComputeJobBundleValue(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns the bundle value associated with a compute job as a String.
- getConcatJobname(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
Returns the name of the concat job
- getCondorFileName(String, int, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
A small utility method that constructs the name of the Condor files that are generated when a dag is submitted.
- getCondorFileName(String, int, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
A small utility method that constructs the name of the Condor files that are generated when a dag is submitted.
- getCondorLogInSubmitDirectory() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns the path to the condor log file in the submit directory.
- getCondorLogInSubmitDirectory(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns the path to the condor log file in the submit directory.
- getCondorLogInTmpDirectory() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns the name of Condor log file in a tmp directory that is created if generation of symlink for condor logs is turned on.
- getConfFile() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the property file pointed to by the --conf option passed to the planner
- getConfigurationProperties(String) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Returns Properties corresponding to a particular configuration.
- getConnectionIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns an iterator to connection params associated with the replica catalog.
- getConstituentJob(int) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a job from a particular position in the list of constituent jobs
- getConstructedObject() - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
Return a object that is constructed during the parsing of the object.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Returns an ADag object corresponding to the abstract plan it has generated.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Returns a Map indexed by the logical ID of the jobs, and each value being a GraphNode object.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
Returns an ADag object corresponding to the abstract plan it has generated.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Returns the workflow represented in the
Graph
form. - getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
Returns an ADag object corresponding to the abstract plan it has generated.
- getConstructedObject() - Method in interface edu.isi.pegasus.planner.parser.pdax.Callback
-
Return a object that is constructed during the parsing of the object.
- getConstructedObject() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the MEGADAG that is generated
- getContact() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the contact string for the Grid gateway
- getContent() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the content associated with the node.
- getContents() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback
-
Returns the contents captured.
- getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
List all the contents of the TC
- getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
List all the contents of the TC
- getContents() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
List all the contents of the TC
- getContents() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
List all the contents of the TC
- getCoreFlag() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor
- getCost() - Method in class edu.isi.pegasus.planner.provisioner.Edge
- getCost(long, long) - Method in class edu.isi.pegasus.planner.provisioner.Edge
- getCount() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the count of the workflow, that was specified in the DAX.
- getCount() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the count of the workflow, that was specified in the DAX.
- getCount() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns the total count of the dax collection.
- getCount() - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor
- getCount() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
Returns the number of words counted so far.
- getCPURequirementsArgument(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Looks at the profile keys associated with the job to generate the argument string fragment containing the cpu required for the job.
- getCreateDirClass() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the class that the user wants, to insert the create directory jobs in the graph in case of creating random directories.
- getCreateDirImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the class that the user wants, to render the directory creation jobs.
- getCreateDirJobExecutionSite(String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
Determines the site where the create dir job should be run , looking at the directory URL passed.
- getCreateDirJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
It returns the name of the create directory job, that is to be assigned.
- getCreateDirSites(ADag) - Static method in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Retrieves the sites for which the create dir jobs need to be created.
- getCreateDirSites(ADag) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Retrieves the sites for which the create dir jobs need to be created.
- getCreationTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getCredentialTypes() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the various credential types required by a job indexed by a site from which to pick up the credential
- getCredName() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the credential name to be used for the stork transfer jobs.
- getCurrentIndent() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
Returns the current indent to be used while writing out
- getDAG(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a DAG object with id dagid if present otherwise null.
- getDAGFile() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns the DAGFile the job refers to.
- getDAGFilename(ADag, PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Returns the basename of the dag file
- getDAGFilename(ADag, String) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns the name of the file on the basis of the metadata associated with the DAG.
- getDAGFilename(PlannerOptions, String, String, String) - Static method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns the name of the file on the basis of the metadata associated with the DAG.
- getDAGInfo() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the DAGInfo that stores the metadata about the DAX
- getDAGLFN() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns the lfn for the DAGFile the job refers to.
- getDAGMANOutFilename(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns the basename of the file, that contains the output of the dagman while running the dag generated for the workflow.
- getDAGs() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Get a list of all the DAG jobs.
- getData() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getDatabaseName(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Returns the database name from the database url string
- getDataConfiguration() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the data configuration
- getDateFormat() - Method in class edu.isi.pegasus.common.util.Currently
-
Accessor: Obtains the default timestamp format for all queues.
- getDateTime(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the time at which planning started in a ISO 8601 format.
- getDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the DAX.
- getDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the path to the dax file being used by the planner.
- getDAX(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a DAX object with id daxid if present otherwise null.
- GetDAX - Class in edu.isi.pegasus.planner.ranking
-
This class is responsible for the fetching the DAX'es on the basis of the request ID's from the Windward Provenance Tracking Catalog.
- GetDAX() - Constructor for class edu.isi.pegasus.planner.ranking.GetDAX
-
The default constructor.
- getDAXCallback() - Method in interface edu.isi.pegasus.planner.parser.dax.DAXParser
-
Retuns the DAXCallback for the parser
- getDAXCallback() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Retuns the DAXCallback for the parser
- getDAXCallback() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Retuns the DAXCallback for the parser
- getDaxFile() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the dax file, that was generated by Chimera containing the description of the Abstract plan.
- getDAXFile() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns the DAXFile the job refers to.
- getDAXID() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Clustered jobs never originate in the DAX.
- getDAXID() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the DAX ID for the job if it appeared in the DAX, else null
- getDAXLFN() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns the lfn for the DAXFile the job refers to.
- getDAXMetadata(PegasusBag, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Returns the metadata stored in the root adag element in the DAX
- getDAXReplicaStoreFile(PlannerOptions, String, String) - Static method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Returns the path to the DAX Replica Store File.
- getDAXs() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Get a list of all the DAX jobs.
- getDAXSchemaLocation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the DAX.
- getDAXSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the DAX.
- getDAXVersion() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the dax version
- getDAXVersion() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the dax version
- getDefaultBundleValueFromProperties(String, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Returns the default value for the clustering/bundling of jobs to be used.
- getDefaultCleanupMaxJobsPropertyKey() - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Returns the property key that can be used to set the max jobs for the default category associated with the registration jobs.
- getDefaultClusterValueFromProperties(String, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Returns the default value for the clustering/bundling of jobs to be used.
- getDefaultExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Returns the path to exitcode that is to be used on the kickstart output.
- getDefaultPathToCondorKickstart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default path to the condor kickstart.
- getDefaultPathToSC() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default path to the site catalog file.
- getDefaultPathToTC() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default path to the transformation catalog.
- getDefaultRegistrationMaxJobsPropertyKey() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns the property key that can be used to set the max jobs for the default category associated with the registration jobs.
- getDefaultThirdPartySites() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default list of third party sites.
- getDefaultTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default transfer implementation to be picked up for constructing transfer jobs.
- getDefaultTransferPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the default priority for the transfer jobs if specified in the properties file.
- getDeletedFileTX(String, Job) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This gets the file transfer objects corresponding to the location of files found in the replica mechanism, and transfers it to the output pool asked by the user.
- getDeletedJobs() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
This returns all the jobs deleted from the workflow after the reduction algorithm has run.
- getDeletedLeafJobs() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
This returns all the deleted jobs that happen to be leaf nodes.
- getDependantFiles() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns the List of dependant files
- getDepET() - Method in class edu.isi.pegasus.planner.provisioner.Node
- getDeployJobName(ADag, String, boolean) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It returns the name of the deployment job, that is to be assigned.
- getDeploymentSites(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Retrieves the sites for which the deployment jobs need to be created.
- getDepSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
- getDepth() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the depth of the node in the graph.
- getDerivation() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the logical name of the derivation that this implementation refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Returns the logical name of the derivation that this implementation refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the logical name of the derivation that this implementation refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns the logical name of the derivation that this implementation refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the logical name of the derivation that this implementation refers to.
- getDerivationName() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the logical name of the derivation that this implementation refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the namespace of the derivation that this implementation refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Returns the namespace of the derivation that this implementation refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the namespace of the derivation that this implementation refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns the namespace of the derivation that this implementation refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the namespace of the derivation that this implementation refers to.
- getDerivationNamespace() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the namespace of the derivation that this implementation refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the version of the derivation that this implementation refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractSingleFTPerXFERJob
-
Returns the version of the derivation that this implementation refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the version of the derivation that this implementation refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns the version of the derivation that this implementation refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the version of the derivation that this implementation refers to.
- getDerivationVersion() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the version of the derivation that this implementation refers to.
- getDescription() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Returns the description for the implementing handler
- getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns the TC implementation being used
- getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Returns a textual description of the transformation mode.
- getDescription() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Returns a textual description of the transformation mode.
- getDescription() - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Returns the TC implementation being used
- getDescription() - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns a textual description of the transfer implementation.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Returns a textual description of the transfer mode.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Returns a textual description of the transfer mode.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Returns a textual description of the transfer mode.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
Returns a textual description of the transfer mode.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns a textual description of the transfer mode.
- getDescription() - Method in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Returns a textual description of the transfer mode.
- getDescription() - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Returns a textual description of the transfer mode.
- getDescriptor() - Method in class edu.isi.pegasus.planner.invocation.Descriptor
-
Accessor
- getDescriptor() - Method in interface edu.isi.pegasus.planner.invocation.HasDescriptor
-
Accessor: Obtains the descriptor of the file handle
- getDescriptor() - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Accessor
- getDesET() - Method in class edu.isi.pegasus.planner.provisioner.Node
- getDesSize() - Method in class edu.isi.pegasus.planner.provisioner.Node
- getDestURL() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single destination url associated with the transfer.
- getDestURL(boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single destination url associated with the transfer.
- getDirectory() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns the directory the job refers to.
- getDirectory() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns the directory the job refers to.
- getDirectory() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the directory where the job runs.
- getDirectory(Directory.TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns a directory corresponding to a particular type
- getDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the directory in which the job should run.
- getDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the directory in which the job should run.
- getDirectoryIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns a directory corresponding to a particular type
- getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the exectionSiteDirectory that is associated with the constituentJob to specify the exectionSiteDirectory in which the constituentJob needs to run
- getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the directory that is associated with the job to specify the directory in which the job needs to run
- getDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the directory that is associated with the job to specify the directory in which the job needs to run
- getDomainName() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getDOTColor() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the color with which DOT should color the node representing the job.
- getDownLen() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return the DnLength of this task.
- getDuration() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the duration for the planning
- getDuration() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getDuration() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getDVName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the name of the underlying derivation.
- getDVNamespace() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the namespace of the underlying derivation.
- getDVVersion() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the version of the underlying derivation.
- getEdges() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a Set of all the Edge objects for the DAX.
- getEdges(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a list of Edge objects for a child job/dax/dag id.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Boot
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.CPU
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Load
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Proc
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.RAM
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Stamp
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Swap
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Task
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.invocation.Uname
-
Returns the name of the xml element corresponding to the object.
- getElementName() - Method in class edu.isi.pegasus.planner.parser.ParserStackElement
-
Returns the element name.
- getElementObject() - Method in class edu.isi.pegasus.planner.parser.ParserStackElement
-
Returns the object referred to by the element.
- getEndEventMessage() - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates the end message for the event.
- getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates the end message for the event on top of the stack.
- getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates the end message for the event.
- getEndEventMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates the end message for the event.
- getEndEventMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates the end message for the event on top of the stack.
- getEndTime() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the end time for the planning operation as epoch with millisecond precision
- getEntries(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns a list of TransformationCatalogEntry objects matching on a site and transformation type.
- getEntries(String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns List of TransformationCatalogEntry objects for a transformation on a particular site.
- getEntries(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns List of TransformationCatalogEntry objects for a transformation on a particular site and a type.
- getEnvArrFromMap() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Generates an array of environment variables.
- getEnvironment() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getEnvironmentVariable(String) - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the name of the environment variable that needs to be set for the job associated with the credential.
- getEnvironmentVariable(String) - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Returns the name of the environment variable that needs to be set for the job associated with the credential.
- getEnvironmentVariable(String) - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Returns the name of the environment variable that needs to be set for the job associated with the credential.
- getEnvironmentVariable(String) - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Returns the name of the environment variable that needs to be set for the job associated with the credential.
- getEnvironmentVariable(String) - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Returns the name of the environment variable that needs to be set for the job associated with the credential.
- getEnvironmentVariable(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns an environment variable associated with the site.
- getEnvironmentVariable(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns an environment variable associated with the site.
- getEnvironmentVariable(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns an environment variable associated with the site.
- getEnvironmentVariable(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns an environment variable for a particular site set in the Site Catalog.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Returns the environment profiles that are required for the default entry to sensibly work.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Returns the environment profiles that are required for the default entry to sensibly work.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Returns the environment profiles that are required for the default entry to sensibly work.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Returns the environment profiles that are required for the default entry to sensibly work.
- getEnvironmentVariables(String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns the environment profiles that are required for the default entry to sensibly work.
- getEnvValue(String) - Method in class edu.isi.pegasus.planner.client.Executable
-
Get the value of the environment variable.
- getError() - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Accessor
- getError() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getErrorMessage() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the error message that we want to log
- getErrorMessagePrefix() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Returns the prefix message to be attached to an error message
- getErrorMessagePrefix() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Returns the prefix message to be attached to an error message
- getErrorMessagePrefix() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
Returns the prefix message to be attached to an error message
- getEventName() - Method in interface edu.isi.pegasus.common.logging.Event
-
Returns the name of event that is currently associated with the log messages.
- getEventName() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Returns the name of event that is currently associated with the log messages and is on the top of the stack
- getEventName() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Returns the name of event that is currently associated with the log messages.
- getEventName() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Returns the name of event that is currently associated with the log messages.
- getEventName() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Returns the name of event that is currently associated with the log messages and is on the top of the stack
- getExecDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the execution directory suffix or absolute specified that is appended/replaced to the exec-mount-point specified in the pool catalog for the various pools.
- getExecMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
A helper method that returns the execution mount point.
- getExecPoolWorkDir(Job) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This determines the working directory on remote execution pool for a particular job.
- getExecPoolWorkDir(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
- getExecPoolWorkDir(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
- getExecPoolWorkDir(String, String, int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
- getExecutable() - Method in class edu.isi.pegasus.planner.dax.File
-
Check if the file is an executable
- getExecutable() - Method in class edu.isi.pegasus.planner.invocation.Arguments
-
Accessor
- getExecutable() - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Accessor
- getExecutable() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getExecutableBasename() - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Return the executable basename for transfer executable used.
- getExecutables() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a set of Executable Objects stored as part of the inDAX Transformation Catalog;
- getExecutableWorkflowName() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the workflow id
- getExecutionDirectory(Job) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns the directory in which a job should be executed.
- getExecutionSites() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the names of the execution sites where the concrete workflow can be run.
- getExecutionSites() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the list of execution pools where the user wants the data products to be computed.
- getExitcode() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the exitcode for the planner
- getExitCode() - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Accessor
- getExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
Returns the path to exitcode that is to be used on the kickstart output.
- getExpectedRuntime(Job, TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Return expected runtime.
- getExpectedRuntimeFromAC(Job, TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Return expected runtime from the AC only if the process catalog is initialized.
- getExternalWorkDirectory(FileServer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Return the work directory as seen externally (including external mount point)
- getExternalWorkDirectoryURL(FileServer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns a URL to the work directory as seen externally ( including external mount point ).
- getExternalWorkDirectoryURL(String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns a URL to the work directory as seen externally ( including external mount point ).
- getExtraArguments(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Looks at the profile key for pegasus::pmc_task_arguments to determine if extra arguments are required for the task.
- getFile() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getFileBaseName(Job) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns the basename of the file to which the job is written to.
- getFileBaseName(Job) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Returns the basename of the file to which the job is written to.
- getFileLocs(String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns all the locations as returned from the Replica Lookup Mechanism.
- getFilename() - Method in interface edu.isi.pegasus.planner.invocation.HasFilename
-
Accessor: Obtains the name of the file
- getFilename() - Method in class edu.isi.pegasus.planner.invocation.Regular
-
Accessor
- getFilename() - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Accessor
- getFiles() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a list of File objects defined as the inDax Replica Catalog
- getFileServerIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Not implmented as yet.
- getFileServerIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Not implmented as yet.
- getFileServers() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Not implemented as yet.
- getFileServers() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Not implemented as yet.
- getFileServers(FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Selects all file servers and returns it matching an operation type.
- getFileServersIterator(FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Returns at iterator to the file servers.
- getFilesFromRC(DAGJob, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Special Handling for a DAGJob for retrieving files from the Replica Catalog.
- getFilesFromRC(DAXJob, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Special Handling for a DAXJob for retrieving files from the Replica Catalog.
- getFilesFromRC(Job, Collection) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
It looks up the RCEngine Hashtable to lookup the locations for the files and add nodes to transfer them.
- getFilesInReplica() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
This returns the files for which mappings exist in the Replica Catalog.
- getFileTransfers() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Returns the collection of transfers associated with this transfer container.
- getFileTransfers() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Returns the collection of transfers associated with this transfer container.
- getFileTX(String, Job, boolean) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This gets the Vector of FileTransfer objects for the files which have to be transferred to an one destination pool.
- getFlags() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the bit fields that contain the transient flags (dR and optional).
- getFloatValue(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
A convenience method to get the intValue for the object passed.
- getFlowID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the flow ID for the workflow.
- getFlowID() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the generated flow ID for the workflow.
- getFlowName() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the flow name
- getFlowName() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the flow name
- getFlowTimestamp() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the flow timestamp for the workflow.
- getFlowTimestamp() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the flow timestamp for the workflow.
- getForce() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the force option set for the planner.
- getForceOption() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns true if the user had asked for the force option.
- getForceReplan() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the force replan option
- getForwardOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the forward options set
- getFreeNodesForSite(String) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Returns the freenodes for a site.
- getFreeSize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Sets the free directory size
- getFrom() - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
return the 'from' task
- getGID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getGID() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the glibc version of the site.
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the glibc version of the site.
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the glibc version of the site.
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the glibc version of the site.
- getGlibc() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Retuns the glibc version of the system.
- getGlibc() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the Glibc version if any set for this file.
- getGlobusVersion() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Returns the Globus version as a dot separated String.
- getGlobusVersion(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Returns the version corresponding to a particular version type.
- getGridDN() - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Returns the distinguished name from the proxy
- getGridFTPBandwidthInfo() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns a list of
GridFTPBandwidth
objects that contain the bandwidths by which a site is connected to other sites. - getGridFTPServers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns all the gridftp servers corresponding to a specified pool.
- getGridFTPServers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns all the gridftp servers corresponding to a specified pool.
- getGridFTPTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the timeout value in seconds after which to timeout in case of opening sockets to grid ftp server.
- getGridGateway(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns a grid gateway object corresponding to a job type.
- getGridGateway(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns a grid gateway object corresponding to a job type.
- getGridGatewayIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Return an iterator to value set of the Map.
- getGridGatewayIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Return an iterator to value set of the Map.
- getGridGatewayJobType() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the corresponding grid gateway job type
- getGridGateways() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Not implemented as yet
- getGridGateways() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Not implemented as yet
- getGridStart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the GRIDSTART that is to be used to launch the jobs on the grid.
- getGridStartInvokeLength() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the trigger value for invoking an application through kickstart using kickstart.
- getGroup() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getGroup() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getGSSCredential(String) - Method in class edu.isi.pegasus.planner.refiner.ThreadPool
-
Loads a GSSCredential from the proxy file residing at the path specified.
- getGVDSVersion() - Method in class edu.isi.pegasus.planner.client.Executable
-
Returns the version of the Griphyn Virtual Data System.
- getHandle() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getHandletoPDAXWriter(String, String, String) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
It returns the handle to the writer for writing out the pdax file that contains the relations amongst the partitions and the jobs making up the partitions.
- getHandleToPlannerCache() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the handle to the planner cache
- getHandleToSiteStore() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the handle to the site store
- getHandleToTransformationCatalog() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the handle to the transformation catalog.
- getHandleToTransformationMapper() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the handle to the transformation mapper.
- getHeadNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the headnode filesystem.
- getHeadNodeStorageDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the local-storage directory.
- getHelp() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns whether to display or not.
- getHorizontalClusterPreference() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the users horizontal clustering preference.
- getHorizontalPartitionerBundleValue(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the bundle value for a particular transformation.
- getHorizontalPartitionerCollapseValue(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the collapse value for a particular transformation.
- getHost() - Method in class edu.isi.pegasus.common.util.PegasusURL
-
Returns the host asscoiated with the PegasusURL
- getHost() - Method in class edu.isi.pegasus.gridftp.GridFTPURL
- getHost() - Method in class edu.isi.pegasus.planner.refiner.Authenticate.HostPort
-
Returns the host associated with this object.
- getHostAddress() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getHostname() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getHostPort() - Method in class edu.isi.pegasus.gridftp.GridFTPURL
- getHostPort(String) - Method in class edu.isi.pegasus.planner.refiner.Authenticate
-
Determines the hostname from the urlPrefix string in the pool file.
- getHttpLog4jURL() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the http url for log4j properties for windward project.
- getId() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- getID() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the ID associated with the job.
- getID() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the logical id of the graph node.
- getID() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It returns the unique id that is associated with the partition.
- getID() - Method in class edu.isi.pegasus.planner.provisioner.Edge
- getID() - Method in class edu.isi.pegasus.planner.provisioner.Node
- getIdleNodes() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the total number of nodes that this grid gateway talks to.
- getImplementingClass(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Given a string readMode returns the name of the class that implements that read mode.
- getImplementingClass(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
This method just checks and gives the correct classname if a user provides the classname in a different case.
- getIn() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return the list of incoming edges.
- getIndex() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the index of the workflow, that was specified in the DAX.
- getIndex() - Method in class edu.isi.pegasus.planner.classes.DagInfo
- getIndex() - Method in class edu.isi.pegasus.planner.dax.ADAG
- getIndex() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It returns the index to number of the partition.
- getIndex(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the index for the namespace.
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
This method gets the info about gridftpbw based on the gridftpbwkey
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns the attribute value of a particular attribute of the server.
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Returns the attribute value of a particular attribute of the jobmanager.
- getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns an
Object
containing the attribute value corresponding to the key specified. - getInfo(int) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Returns the attribute value of a particular attribute of the work directory.
- getInheritedRCFiles() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the inherited rc files.
- getINode() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getInputBlocks() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getInputDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the input directory.
- getInputFiles() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the set of input files associated with the job.
- getInputSize() - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor
- getInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Check if the executable is of type installed.
- getInstance() - Static method in class edu.isi.pegasus.common.util.CondorVersion
-
Factory method to instantiate the class.
- getInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Deprecated.
- getInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Deprecated.
- getInstance() - Static method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns an instance to this properties object.
- getInstance() - Static method in class edu.isi.pegasus.planner.common.UserOptions
-
The method used to invoke the singleton instance from the other classes.
- getInstance(LogManager) - Static method in class edu.isi.pegasus.common.util.CondorVersion
-
Factory method to instantiate the class.
- getInstance(PlannerOptions) - Static method in class edu.isi.pegasus.planner.common.UserOptions
-
The method used to invoke the singleton instance the first time, from the CPlanner class.
- getInstance(String) - Static method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns an instance to this properties object.
- getInstance(String, String) - Static method in class edu.isi.pegasus.common.logging.LogManager
-
To get a reference to the the object.
- getInteger(int) - Static method in class edu.isi.pegasus.planner.common.PegRandom
-
This calls the next double function and returns an integer between the 0 and upper index.
- getInteger(int, int) - Static method in class edu.isi.pegasus.planner.common.PegRandom
-
This calls the next double function and returns an integer between the lower index and upper index.
- getInterface() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- getInternalMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Returns the internal mount point for the directory.
- getInternalMountPointOfWorkDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the work directory for the compute jobs on a site.
- getInternalMountPointOfWorkDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the work directory for the compute jobs on a site.
- getInternalWorkDirectory(Job) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool for a particular job.
- getInternalWorkDirectory(Job, boolean) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool or a staging site for a particular job.
- getInternalWorkDirectory(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Deprecated.
- getInternalWorkDirectory(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
- getInternalWorkDirectory(String, String, int) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This determines the working directory on remote execution pool on the basis of whether an absolute path is specified in the pegasus.dir.exec directory or a relative path.
- getInterpoolFileTX(Job, Collection<GraphNode>) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This gets the Vector of FileTransfer objects for all the files which have to be transferred to the destination pool in case of Interpool transfers.
- getIntValue(Object) - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenience method to get the intValue for the object passed.
- getIntValue(Object) - Method in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
A convenience method to get the intValue for the object passed.
- getInvoke() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Returns list of Invoke objects
- getInvoke() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a list of Invoke objects associated with the workflow
- getInvoke() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Return the list of Notification objects
- getInvoke() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Return the list of Notification objects
- getInvoluntarySwitches() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the involuntary context switches.
- getIPFilesForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a comma separated list of files that are designated for transfer via condor file transfer mechanism for the job.
- getJDBCURL(String, Properties) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Constructs the jdbc url on the basis fo the driver and db properties.
- getJob(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Obtains a job at a certain position in the job list.
- getJob(String) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the job object corresponding to the id of the job.
- getJob(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a Job object with id jobid if present otherwise null.
- getJob(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the job that has been constructed for a particular partition.
- getJobAggregator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns the JobAggregator that created this aggregated job.
- getJobAggregator() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns what job aggregator is to be used to aggregate multiple compute jobs into a single condor job.
- getJobCount() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Obtains the size of the job list.
- getJobList() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Gets an array of all values that constitute the current content.
- getJobManager() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returnss the remote jobmanager on which the job has to run.
- getJobManager(String, String) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
It returns a jobmanager for the given pool.
- getJobmanagers() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
It returns all the jobmanagers corresponding to a specified pool.
- getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns all the jobmanagers corresponding to a specified site.
- getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
It returns all the jobmanagers corresponding to a specified pool and universe.
- getJobmanagers(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns all the jobmanagers corresponding to a specified site.
- getJobmanagers(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns all the jobmanagers corresponding to a specified pool and universe.
- getJobmanagers(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns all the jobmanagers corresponding to a specified pool and universe.
- getJobName() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
It returns the name of the main/compute job making up the VDS supernode with which this transfer is related.
- getJobnamePrefix() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the job prefix to be used while constructing the job names.
- getJobPriority(Job) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Returns the priority associated with a job based on the condor profile key priority .
- getJobPriority(Job, int) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Computes the priority for a job based on job type and depth in the workflow
- getJobs() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Get a list of all the DAG jobs.
- getJobsInRC(Graph, Set) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Returns all the jobs whose output files exist in the Replica Catalog.
- getJobStatus() - Method in class edu.isi.pegasus.planner.invocation.Status
-
Accessor
- getJobType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the type of jobs that run via this grid gateway.
- getJobType() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the type of the job.
- getJobTypeDescription() - Method in class edu.isi.pegasus.planner.classes.Job
-
Gets the textual description of the type associated with the job.
- getJobTypeDescription(int) - Method in class edu.isi.pegasus.planner.classes.Job
-
Gets the textual description of the type that can be associated with a job.
- getKeepTMPValue(String) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Returns the int value corresponding to the string value passed.
- getKey() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the connection key.
- getKey() - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Returns the key associated with this tuple.
- getKey() - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Get the key of this metadata object
- getKey() - Method in class edu.isi.pegasus.planner.dax.Profile
-
Get the key of this Profile
- getKey() - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Accessor
- getKey(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Returns the key with the prefix stripped off.
- getKey(String, String) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
Adds a prefix to the key and returns it.
- getKickstartPath() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
A helper method that returns the path to gridlaunch on the site.
- getKickstartPath(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the default path to kickstart as constructed from the environment variable associated with a site in the site catalog
- getLabel() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the label of the workflow, that was specified in the DAX.
- getLabel() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the label of the workflow, that was specified in the DAX.
- getLabel() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Returns the DAXlabel.
- getLabel() - Method in class edu.isi.pegasus.planner.dax.Edge
- getLabel(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.Label
-
Returns the label for the node.
- getLast() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
Returns the last element in the chain.
- getLeaves() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the leaf nodes of the Graph.
- getLeaves() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns the leaf nodes of the Graph.
- getLeaves() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns the leaf nodes of the Graph.
- getLeaves() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns the leaf nodes of the Graph.
- getLevel() - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Returns the debug level.
- getLevel() - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Returns the debug level.
- getLevel() - Method in class edu.isi.pegasus.common.logging.LogManager
-
Returns the debug level.
- getLevel() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the level associated with the job.
- getLfn(String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get logical transformations on a given resource and/or of a particular type.
- getLFN() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
It returns the lfn of the file that is associated with this transfer.
- getLFN() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the associated LFN.
- getLFN() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getLFNCount() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns the number of LFN's for which the mappings are stored in the store.
- getLfnProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get the LFn profiles associated with a logical transformation
- getLFNs() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
It returns the list of lfns referred to by the DAG.
- getLFNs() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns the set of LFN's for which the mappings are stored in the store.
- getLFNs(boolean) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the list of lfns referred to by the DAG.
- getLFNs(Set) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns a
Set
of lfns for which the mappings are stored in the store, amongst theSet
passed as input. - getLineNumber() - Method in exception edu.isi.pegasus.planner.parser.ScannerException
- getLineNumber() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Obtains the current line number in the input stream from the outside.
- getLineNumber() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Obtains the current line number in the input stream from the outside.
- getLink() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the linkage of the file.
- getLinkage() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the linkage for the file during parsing.
- getLinkCount() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getListOfFilesToDelete() - Method in class edu.isi.pegasus.planner.refiner.cleanup.CleanupJobContent
-
Returns the list of files to be deleted for a cleanupNode
- getLocalDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Returns the local directory.
- getLocalPath() - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Returns the path to user cred on the local site.
- getLocalPath() - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Returns the path to user proxy on the local site.
- getLocalPath() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Returns the path to user cred on the local site.
- getLocalPath() - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Returns the path to user cred on the local site.
- getLog4JLogFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the local log file where you want the messages to be logged.
- getLogFormatter() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the log formatter to use.
- getLogger() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get Logger/
- getLoggingFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the file to which all the logging needs to be directed to.
- getLoggingLevel() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the logging level.
- getLoggingLevel() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Returns the logging level.
- getLoggingLevel() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Returns the logging level.
- getLogicalId(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns the id associated with the logical transformation.
- getLogicalID() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the logical id of the job.
- getLogicalName() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the Name of the logical transformation.
- getLogicalNameForJobs(List<Job>) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the logical names for the jobs.
- getLogicalNameForJobs(List<Job>) - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Returns null as for label based clustering we dont want the transformation name to be considered for constructing the name of the clustered jobs
- getLogicalNamespace() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the Namespace associated with the logical transformation.
- getLogicalTransformation() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Gets the Fully Qualified Transformation mName in the format NS::Name:Ver.
- getLogicalVersion() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the mVersion of the logical transformation.
- getLogManager() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the log manager to use.
- getMachine() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getMachine() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- getMachineInfoIterator() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Returns an iterator for the machine info objects
- getMachineSpecific() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Obtains the machine-specific grouping element.
- getMajor() - Method in class edu.isi.pegasus.common.util.Version
- getMajorFaults() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the major page faults.
- getMakespan() - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Returns the makespan of the scheduled workflow.
- getMatchingJMList(List, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns a list containing only those jobmanager entries that match a particular universe.
- getMatchingProperties(String, boolean) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the properties matching a particular prefix as a list of sorted name value pairs, where name is the full name of the matching property (including the prefix) and value is it's value in the properties file.
- getMaximumCleanupJobsPerLevel() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the maximum number of clean up jobs created per level of the workflow in case of InPlace cleanup.
- getMaximumRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getMegaDAGMode() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the megadag generation option .
- getMemoryRequirementsArgument(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Looks at the profile keys associated with the job to generate the argument string fragment containing the memory required for the job.
- getMetadata() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
Returns the metadata/attributes assoicated with the element that was parsed for.
- getMetadata(PegasusBag, String) - Static method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
-
Returns the metadata stored in the root adag element in the DAX
- getMetaData() - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Returns the List of MetaData objects associated with this Catalog entry object
- getMethodName(int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Its returns the name of the method that needs to be invoked to get the object of the implementing pool class.
- getMetricsFileLocationInSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the metrics file location in the submit directory
- getMetricsLogFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the file that is used to be logging metrics Referred to by the "pegasus.log.metrics.file" property.
- getMetricsType() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the metric type
- getMinor() - Method in class edu.isi.pegasus.common.util.Version
- getMinorFaults() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the minfor page faults.
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.All
-
Returns the mode description.
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Returns the TCMapper Mode.
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Installed
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged
- getMode() - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit
- getMode() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getModificationTime() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the mount point
- getMountPoint() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Returns the mount point for the file system type.
- getMTime() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the last modified time for the file containing the workflow description.
- getMTime() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the last modified time for the file containing the workflow description.
- getName() - Method in class edu.isi.pegasus.gridftp.FileInfo
- getName() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns name of compound transformation.
- getName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the name of the job.
- getName() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- getName() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Return the name/label of the dax
- getName() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the name of the executable
- getName() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the name of the file
- getName() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Get the name of the transformation
- getName() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns the logical name of the graph node.
- getName() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It returns the name of the partition.
- getName() - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Returns the name of the dax.
- getName() - Method in class edu.isi.pegasus.planner.selector.site.heft.Site
-
Returns the name of the site.
- getName() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Returns the key of this pair, i.e the left hand side of the mapping.
- getName(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Returns the name from the key.
- getNameOfDAX() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
Returns the name of the dax.
- getNameOfDAX() - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
Returns the name of the dax.
- getNamespace() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns the namespace
- getNamespace() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the namespace of the executable
- getNamespace() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the namespace of the file
- getNamespace() - Method in class edu.isi.pegasus.planner.dax.Job
- getNamespace() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Get the namespace of the transformation
- getNameSpace() - Method in class edu.isi.pegasus.planner.dax.Profile
-
Get the namespace of this profile
- getNetloggerExitCodePath() - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Returns the path to exitcode that is to be used on the kickstart output.
- getNextException() - Method in exception edu.isi.pegasus.planner.catalog.CatalogException
-
Retrieves the exception chained to this
CatalogException
object. - getNextIndent() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
Returns the indent to be used for the nested element.
- getNode() - Method in class edu.isi.pegasus.planner.refiner.cleanup.CleanupJobContent
-
Returns the associated cleanupNode for which the files are deleted.
- getNode(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the node matching the id passed.
- getNode(String) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns the node matching the id passed.
- getNode(String) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns the node matching the id passed.
- getNode(String) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns the node matching the id passed.
- getNodeIDs() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It returns the set of the job ids making up the partition.
- getNodeLabel() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- getNodeName() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getNodes() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns a list of nodes making up the partition.
- getNonStandardJavaOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the Set of non standard java options.
- getNonThirdPartySite() - Method in class edu.isi.pegasus.planner.classes.TransferJob
-
Returns the site at which the job would have run if the transfer job was being run in non third party mode.
- getNoOfJobs() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the number of jobs in the dag on the basis of number of elements in the
dagJobs
Vector. - getNOOPJobName(ADag) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Returns the name of the noop job.
- getNOOPJobName(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Generates the name of the noop job , that is unique for the given workflow.
- getNotification() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Same as getInvoke().
- getNotification() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a list of Invoke objects associated with the workflow.
- getNotification() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Return the list of Notification objects (same as getInvoke)
- getNotification() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Return the list of Notification objects (same as getInvoke()
- getNotifications() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns all the notifications associated with the job.
- getNotifications() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns all the notifications associated with the job.
- getNotifications() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns all the notifications associated with the job.
- getNotifications() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns all the notifications associated with the job.
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns a collection of all the notifications that need to be done for a particular condition
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns a collection of all the notifications that need to be done for a particular condition
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns a collection of all the notifications that need to be done for a particular condition
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns a collection of all the notifications that need to be done for a particular condition
- getNotifications(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Returns a collection of all the notifications that need to be done for a particular condition
- getNumberOfRescueTries() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the number of times to try for rescue dag submission.
- getNumOfTransferProcesses() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns the number of processes of g-u-c that the transfer script needs to spawn to do the transfers.
- getNumOfTransferStreams() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns the number of streams that each transfer process uses to do the ftp transfer.
- getOptional() - Method in class edu.isi.pegasus.planner.dax.File
-
Check the optional flag of the file
- getOptions() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the options passed to the planner.
- getOriginalArgString() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the argument string of how planner was invoked.
- getOs() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Returns the os type of the system.
- getOS() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the OS of the site.
- getOS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the OS of the nodes that this grid gateway talks to.
- getOS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the OS of the site.
- getOS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the OS of the site.
- getOS() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the OS the Executable is compiled for
- getOsRelease() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the OS release set for this executable.
- getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the OS release of the site.
- getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the OS release of the site.
- getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the OS release of the site.
- getOSRelease() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the OS release of the site.
- getOsversion() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Returns the os version of the system.
- getOsVersion() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the OS version set for this executable.
- getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the OS version of the site.
- getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the OS version of the site.
- getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the OS version of the site.
- getOSVersion() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the OS version of the site.
- getOut() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return the list of outgoing edges.
- getOutputBlocks() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getOutputDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the output directory
- getOutputFiles() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the set of output files associated with the job.
- getOutputFiles(Collection<GraphNode>) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
It gets the output files for all the nodes which are specified in the nodes passed.
- getOutputFilesForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a comma separated list of files that are designated for transfer via condor file transfer mechanism for the job.
- getOutputPool() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns output pool where the user wants the data products to be transferred to.
- getOutputSite() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the output site where to stage the output .
- getOutputSize() - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor
- getPageSize() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Obtains the page size information.
- getParent() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the parent in the edge.
- getParent() - Method in class edu.isi.pegasus.planner.dax.Edge
- getParents() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns a list of
GraphNode
objects that are parents of the node. - getParents(String) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns a list of id's of parents for a node in the partition.
- getParentsTransientRC(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Returns a set containing the paths to the parent dax jobs transient replica catalogs.
- getPartitionCount(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Returns the number of partitions referred to in the PDAX file.
- getPartitionerDAXCallback() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the DAXCallback that is to be used while parsing the DAX.
- getPartitionerLabelKey() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the key that is to be used as a label key, for labelled partitioning.
- getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.BFS
-
Constructs the id for the partition.
- getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Constructs the id for the partition.
- getPartitionID(int) - Method in class edu.isi.pegasus.planner.partitioner.Label
-
Constructs the id for the partition.
- getPartitioningType() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the partitioning type in case of partition and plan.
- getPartitionName() - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It returns the name of the partitioned dax, that the object is currently writing or initialized to write.
- getPartitionName() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Returns the name of the partition, that needs to be set while creating the Partition object corresponding to each partition.
- getPartitionParsingMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode for parsing the dax while writing out the partitioned daxes.
- getPatch() - Method in class edu.isi.pegasus.common.util.Version
- getPath() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the path to the credential on the submit host.
- getPath() - Method in class edu.isi.pegasus.common.credential.impl.Abstract
-
Returns the path to the credential on the submit host.
- getPath() - Method in class edu.isi.pegasus.common.util.PegasusURL
-
Returns the path associated with the PegasusURL
- getPath() - Method in class edu.isi.pegasus.gridftp.GridFTPURL
- getPath(String) - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the path to the credential for a particular site handle
- getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Returns the path to irodsEnv.
- getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Returns the path to user proxy.
- getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Returns the path to S3CFG .
- getPath(String) - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Returns the path to SSH_PRIVATE_KEY .
- getPathToChmodExecutable(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the path to the chmod executable for a particular execution site by looking up the transformation executable.
- getPathToLocalProxy() - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Returns path to the local proxy
- getPathtoPBSFile(ADag) - Method in class edu.isi.pegasus.planner.code.generator.PBS
-
Returns the basename for the PBS script file for the dag
- getPathtoPMCFile(ADag) - Method in class edu.isi.pegasus.planner.code.generator.PMC
-
Returns the basename for the pmc file for the dag
- getPathToShellScript(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns path to the shell script that is generated
- getPDAX() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the path to the PDAX file being used by the planner.
- getPDAX() - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Returns the name of the pdax file written out.
- getPDAXFilename(String, int) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It constructs the name of the partitioned dax file that has to be written corresponding to a partition of the dax.
- getPDAXFilename(String, int, boolean) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It constructs the name of the partitioned dax file that has to be written corresponding to a partition of the dax.
- getPDAXSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the PDAX.
- getPegasusBag() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Returns the bag of intialization objects.
- getPegasusBag() - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
Returns the bag of intialization objects.
- getPegasusHome() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Deprecated.
- getPegasusHome() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Deprecated.
- getPegasusHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Deprecated.
- getPegasusHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the value of PEGASUS_HOME for a site.
- getPegasusProperties() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get PegasusProperties
- getPegasusRunInvocation() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Returns the pegasus-run invocation on the workflow planned.
- getPfn(String, String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get physical transformation for a particular logical transformation and/or on a resource and/or of a particular type
- getPFN() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Accessor: Obtains the PFN portion from this entry.
- getPFN(int) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Return a PFN as a
ReplicaCatalogEntry
- getPFNCount() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the number of pfn's associated with the lfn.
- getPFNList() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the list of pfn's as
ReplicaCatalogEntry
objects. - getPfnProfile(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get the profiles associated with a physical transformation.
- getPhysicalFiles() - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Returns a List of PFN objects associated with this Catalog entry
- getPhysicalId(String, TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns the id of the physical transformation
- getPhysicalIds(String, TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns a list of pfnid for a given pfn on any resource, and of any type.
- getPhysicalMemory() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- getPhysicalTransformation() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the physical location of the transformation.
- getPID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getPID() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getPlannerOptions() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get PlannerOptions
- getPlatform() - Method in class edu.isi.pegasus.common.util.Version
- getPool() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns the pool id of the associated resource in this request.
- getPoolConfig() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
This class returns the reference to the
PooConfig
object containing information about all the pools. - getPoolConfig() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
This class returns the reference to the
PooConfig
object containing information about all the pools. - getPoolEntry(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
Gets the pool information from the pool.config file on the basis of the name of the pool, and the universe.
- getPoolEntry(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Gets the pool information from the pool.config file on the basis of the name of the pool, and the universe.
- getPoolFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the pool file.
- getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns a textual description of the pool mode being used.
- getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
Returns a textual description about the pool mode that is implemented by this class.
- getPoolMode() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
-
Returns a textual description about the pool mode that is implemented by this class.
- getPoolMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode to be used for accessing the pool information.
- getPoolName() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
Return the pool for which the transfers are grouped
- getPoolName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Return the pool for which the transfers are grouped
- getPoolProfile(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns the profile information associated with a particular pool.
- getPoolProfile(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns the profile information associated with a particular pool.
- getPoolProfile(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns profile information associated with a particular namespace and pool.
- getPools() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
It returns all the pools available in the site catalog
- getPools() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It returns all the pools available in the site catalog
- getPoolSchemaLocation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the DAX.
- getPoolSchemaLocation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the schema for the site catalog file.
- getPort() - Method in class edu.isi.pegasus.gridftp.GridFTPURL
- getPort() - Method in class edu.isi.pegasus.planner.refiner.Authenticate.HostPort
-
Returns the port associated with this object.
- getPosition() - Method in exception edu.isi.pegasus.common.util.ProfileParserException
-
Obtains the position at which point the exception was thrown.
- getPosition() - Method in exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException
-
Obtains the position at which point the exception was thrown.
- getPosition() - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Accessor
- getPOSTScriptPath(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Returns the path to the postscript of a particular type
- getPostScriptProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Returns the properties that need to be passed to the the postscript invocation in the java format.
- getPostScriptProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Returns the properties that need to be passed to the the postscript invocation in the java format.
- getPrefix(int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Returns the prefix that needs to be logged corresponding to a particular message type, when a message is being logged.
- getPreScriptArguments() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the arguments to the prescript for the job if set.
- getPreScriptPath() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the path to the prescript for the job if set.
- getPrintStream(int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Returns a PrintWriter stream on which to log the message.
- getPrintStream(String) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets an internal writer to point to a particular stream.
- getPriority() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Sets the priority for the File Transfer
- getPriority(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Returns the priority for the transfer job as specified in the properties file.
- getPriorityArgument(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Looks at the profile keys associated with the job to generate the argument string fragment containing the priority to be associated for the job.
- getProfile() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the Profile (namespace, value and key);
- getProfile() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Parses a single line and returns a profile.
- getProfileKey() - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Returns the env or pegasus profile key that needs to be associated for the credential.
- getProfileKey() - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Returns the env or pegasus profile key that needs to be associated for the credential.
- getProfileKey() - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Returns the env or pegasus profile key that needs to be associated for the credential.
- getProfileKey() - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Returns the env or pegasus profile key that needs to be associated for the credential.
- getProfileKey() - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Returns the env or pegasus profile key that needs to be associated for the credential.
- getProfileKey() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the Key of the Profile
- getProfileKeyIterator() - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Provides an iterator to traverse the profiles by their keys.
- getProfileKeyIterator() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Provides an iterator to traverse the profiles by their keys.
- getProfileKeyIterator(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns a iterator over the profile keys corresponding to a particular namespace.
- getProfileNamespace() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the NameSpace of the Profile
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the list of profiles for all namespaces.
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServer
-
Returns the associated profiles
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Returns the profiles associated with the file server.
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the profiles associated with the site.
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the profiles associated with the site.
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Returns the profiles associated with the file server.
- getProfiles() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the list of profiles associated with the transformation.
- getProfiles() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Return the profile List.
- getProfiles() - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Return the List of
Profile
objects associated with this Catalog entry - getProfiles() - Method in class edu.isi.pegasus.planner.dax.PFN
- getProfiles(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the list of profiles corresponding to a single namespace
- getProfiles(Profiles.NAMESPACES) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns all the profiles relevant to a particular namespace
- getProfiles(Namespace) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the list of profiles corresponding to a single namespace
- getProfiles(String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the list of profiles corresponding to a single namespace
- getProfiles(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the profiles for a particular Namespace.
- getProfilesForTransformation() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Returns a list of profiles that have to be applied to the entries for all the sites corresponding to a transformation.
- getProfileValue() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the Value for the profile
- getProgramName(String) - Method in interface edu.isi.pegasus.common.logging.Event
-
Returns the program name for the software whose log statement are logged.
- getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Returns the program name for the software whose log statement are logged.
- getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Returns the program name for the software whose log statement are logged.
- getProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Returns the program name for the software whose log statement are logged.
- getProgramName(String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Returns the program name for the software whose log statement are logged.
- getProperties() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the path to the properties file for the run.
- getPropertiesInSubmitDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the property file that has been writting out in the submit directory.
- getProperty(String) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: access to the internal properties as read from file.
- getProperty(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It allows you to get any property from the property file without going through the corresponding accesor function in this class.
- getProperty(String, String) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: access to the internal properties as read from file An existing system property of the same key will have precedence over any project property.
- getProperty(String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
This function is used to check whether a deprecated property is used or not.
- getProperty(String, String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns the name of the property, for a particular site X.
- getProperty(String, String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
This function is used to check whether a deprecated property is used or not.
- getPropertyKey(int) - Static method in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
Returns the name of the property that needs to be loaded for a particular type.
- getPropertyKey(String, String) - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Returns the full name of the property key with the appropriate prefix
- getProtocol() - Method in class edu.isi.pegasus.common.util.PegasusURL
-
Returns the protocol associated with the PegasusURL
- getProtocol() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns protocol implemented by the file server.
- getQuotedValue(String) - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Parses a quoted value and strips out the enclosing quotes.
- getRandomDir() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the random directory option.
- getRandomDirectory(ADag) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Sets the basename of the random directory that is created on the remote sites per workflow.
- getRandomDirName() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the name of the random directory, only if the generate Random Dir flag is set.
- getRandomDirName() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the name of the random directory, only if the generate Random Dir flag is set.
- getRank() - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Returns the rank.
- getRank() - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Returns the rank associated with it.
- getReceived() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getRefinementProvenanceStore() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the provenance store to use to log the refiner actions.
- getRegex() - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Returns the underlying regex pattern associated with the Rank object.
- getRegexSet(Properties) - Method in class edu.isi.pegasus.planner.selector.replica.Regex
-
Returns a sorted set containing the various Patterns pre-compiled.
- getRegister() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the register flag of this file.
- getRegisterFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the value of the register flag
- getRegistrationFiles() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Returns the collection of registration files associated with this transfer container.
- getRegistrationFiles() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Returns the collection of registration files associated with this transfer container.
- getRegJobName(int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
Generates the name of the transfer job, that is unique for the given workflow.
- getRegJobName(int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Generates the name of the transfer job, that is unique for the given workflow.
- getRegName() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Returns the name of the registration job.
- getRegName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Returns the name of the registration job.
- getRelations() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
A function to return the child-parent relations for the jobs making up the partition.
- getRelativeDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the relative directory.
- getRelativeStorageDirectoryAddon() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Return the relative directory that needs to be appended to the storage directory for the workflow.
- getRelativeSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the path to the relative submit directory.
- getRelativeSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the relative submit directory.
- getRelativeSubmitDirectoryOption() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the relative submit directory option.
- getRelease() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getReleaseVersion() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Return the release version
- getReleaseVersion() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Return the release version
- getRemoteExecutable() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the path of the underlying executable on the remote grid site.
- getRemoveDirJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
It returns the name of the remove directory job, that is to be assigned.
- getReplicaCatalogIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Return an iterator to the replica catalog associated with the site.
- getReplicaCatalogIterator() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Return an iterator to the replica catalog associated with the site.
- getReplicaLocation(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns a
ReplicaLocation
corresponding to the LFN. - getReplicaMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the replica mode.
- getReplicaSelector() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the name of the selector to be used for selection amongst the various replicas of a single lfn.
- getReplicaStore() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the Replica Store
- getReplicaStoreFromDirectory(String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Loads the mappings from the input directory
- getReplicaStoreFromFiles(Set) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Ends up loading a Replica Store from replica catalog files
- getRequestID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the request id.
- getResource() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getResource(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Get and print the Resource entries for a given logical transformation and transformation type
- getResourceContact() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns the url of the resource to contact.
- getResourceHandle() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Obtains the resource handle from the attributes map.
- getResourceId() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the resource where the transformation is located.
- getResourceType() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns the type of the request.
- getResponseMessage() - Method in class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- getRLIURL() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the url to the RLI of the RLS.
- getRLSTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns the timeout value in seconds after which to timeout in case of no activity from the RLS.
- getRootDirectoryNameForPegasus(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Does regex magic to figure out the version of pegasus from the url, and use it to construct the name of pegasus directory, when worker package is untarred.
- getRootNodes() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the root nodes in the partition.
- getRoots() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the root nodes of the Graph.
- getRoots() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns the root nodes of the Graph.
- getRoots() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns the root nodes of the Graph.
- getRoots() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns the root nodes of the Graph.
- getRootWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the UUID for the Root workflow
- getRootWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the UUID for the Root workflow
- getRootWorkflowUUID() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the root workflow UUID if defined in the properties, else null Referred to by the "pegasus.workflow.root.uuid" property.
- getRuntime() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the expected runtime for the job that is set using the setRuntime method.
- getRuntime() - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Returns the runtime.
- getRunTime(Job) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
- getScheduler() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the the underlying scheduler that gateway talks to.
- getSchemaDir() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor to schema directory
- getSchemaDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor to the schema directory of the Pegasus install
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Helps the load database to locate the DAX XML schema, if available.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Returns the local path to the XML schema against which to validate.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.Parser
-
Helps the load database to locate the XML schema, if available.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Helps the load database to locate the PDAX XML schema, if available.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
Not implemented as yet
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
Returns the local path to the XML schema against which to validate.
- getSchemaLocation() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
Returns the local path to the XML schema against which to validate.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Returns the XML schema namespace that a document being parsed conforms to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Returns the XML schema namespace that a document being parsed conforms to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Returns the XML schema namespace that a document being parsed conforms to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Returns the XML schema namespace that a document being parsed conforms to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.Parser
-
Returns the XML schema namespace that a document being parsed conforms to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Returns the XML schema namespace that a document being parsed conforms to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
Not implemented as yet
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
Returns the XML schema namespace that a document being parsed conforms to.
- getSchemaNamespace() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
Returns the XML schema namespace that a document being parsed conforms to.
- getSchemaOfDocument(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
A convenience method that tries to get the name of the schema the document refers to.
- getScratch() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Returns the scratch area on the head node.
- getScratch() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Returns the scratch area on the head node.
- getScriptFooter() - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns the footer for the generated shell script.
- getScriptHeader(String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Returns the header for the generated shell script.
- getSeMountPoint(SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Return the storage mount point for a particular pool.
- getSent() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getSetXBitJobName(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Generates the name of the setXBitJob , that is unique for the given workflow.
- getSetXBitJobName(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Generates the name of the setXBitJob , that is unique for the given workflow.
- getSharedDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor to the bin directory of the Pegasus install
- getSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Returns the shared directory.
- getSharedRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getSharedStateDir() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor to $PEGASUS_HOME/com.
- getShiwaBundle() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the Shiwa Bundle set
- getShortName() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Returns the short name for the implementation class.
- getShortName() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
- getShortName() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Flat
-
Returns the short name for the implementation class.
- getShortName() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
Returns the short name for the implementation class.
- getShortName() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
- getSignalNumber() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor
- getSignalNumber() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Accessor
- getSignals() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the system signals sent.
- getSISiteBundleValue(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Determines the bundle factor for a particular site on the basis of the stage in bundle value associcated with the underlying transfer transformation in the transformation catalog.
- getSite() - Method in class edu.isi.pegasus.planner.dax.PFN
- getSite() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Returns the site transformation for a site, and moves the scanner to hold the next
TransformationCatalogReservedWord
. - getSiteBundleValue(String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
Determines the bundle factor for a particular site on the basis of the key associcated with the underlying transfer transformation in the transformation catalog.
- getSiteForCleanup(Job) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Returns site to be used for the cleanup algorithm.
- getSiteHandle() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the site handle for the site
- getSiteHandle() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the site handle for the site
- getSiteHandle() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the handle of the site where the job is scheduled.
- getSiteHandle() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Returns the site handle for a site, and moves the scanner to hold the next
SiteCatalogReservedWord
. - getSiteList(String) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns a List of siteid's that are valid for a particular lfn.
- getSiteList(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Returns a list of sites that are valid sites for a given lfn and a list of sites.
- getSiteList(String, List) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns a list of siteid's that are valid for a particular lfn and among a list of input sites
- getSiteMap(String) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns a HashMap of sites as keys and a List of TransformationCatalogEntry object as values.
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.All
-
This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site.
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site.
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Installed
-
This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site.
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged
-
This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site
- getSiteMap(String, String, String, List) - Method in class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit
-
This method returns a Map of compute sites to List of TransformationCatalogEntry objects that are valid for that site
- getSiteNameForEnvironmentKey(String) - Method in class edu.isi.pegasus.common.credential.impl.Abstract
-
Returns the site name sanitized for use in an environment variable.
- getSites() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Returns information about all the sites.
- getSiteSelectorKeep() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a value designating whether we need to keep the temporary files that are passed to the external site selectors.
- getSiteSelectorMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the class name of the site selector, that needs to be invoked to do the site selection.
- getSiteSelectorPath() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the external site selector that needs to be called out to make the decision of site selection.
- getSiteSelectorTimeout() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns the timeout value in seconds after which to timeout in case of no activity from the external site selector.
- getSitesSet(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a set of third party sites.
- getSitesTCEntries(String, List) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Retrieves all the entries matching a particular lfn for the sites passed.
- getSiteStore() - Method in interface edu.isi.pegasus.planner.parser.SiteCatalogXMLParser
-
Returns the constructed site store object
- getSiteStore() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
Returns the constructed site store object
- getSiteStore() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
Returns the constructed site store object
- getSiteTCEntries(String, String) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
This method returns a list of TransformationCatalogEntry objects for a given transformation and siteid
- getSize() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the size for the file.
- getSize() - Method in class edu.isi.pegasus.planner.dax.File
-
Return the size of the file
- getSize() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getSLSInputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Returns the LFN of sls input file.
- getSLSInputLFN(Job) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Returns the LFN of sls input file.
- getSLSInputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns the LFN of sls input file.
- getSLSOutputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Returns the LFN of sls output file.
- getSLSOutputLFN(Job) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Returns the LFN of sls output file.
- getSLSOutputLFN(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns the LFN of sls output file.
- getSLSTransferArguments() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the extra arguments with which the transfer executable used in PegasusLite needs to be invoked.
- getSLSTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the sls transfer implementation that is to be used for constructing the transfer jobs.
- getSourceURL() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single source url associated with the transfer.
- getSourceURL(boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single source url associated with the transfer.
- getSpace(int, int) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Gets the required space for pretty printing.
- getStackRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getStagedExecutableBaseName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the basename for the staged executable corresponding to the job.
- getStagedExecutableBaseName(String, String, String) - Static method in class edu.isi.pegasus.planner.classes.Job
-
Returns the basename for the staged executable corresponding to the job.
- getStageInPoolTransfer(Map<String, Bundle.PoolTransfer>, String, int, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns the appropriate stagein pool transfer for a particular site.
- getStageOutPoolTransfer(String, boolean, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Returns the appropriate pool transfer for a particular site.
- getStageOutPoolTransfer(String, boolean, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Returns the appropriate pool transfer for a particular site.
- getStagingDelimiter() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the delimiter to be used for constructing the staged executable name, during transfer of executables to remote sites.
- getStagingSite(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Returns the staging site to be used for a job.
- getStagingSite(Job) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Returns the staging site to be used for a job.
- getStagingSite(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the staging site for an execution site.
- getStagingSite(String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns the staging site for a particular execution site.
- getStagingSiteHandle() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the staging site.
- getStamp() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Obtains the time stamp information when the remote machine element was recorded.
- getStart() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getStart() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getStartEventMessage() - Method in interface edu.isi.pegasus.common.logging.Event
-
Creates the start message for the event.
- getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Creates the start message for the event on top of the internal stack
- getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Creates the start message for the event.
- getStartEventMessage() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Creates the start message for the event.
- getStartEventMessage() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Creates the start message for the event on top of the internal stack
- getStartTime() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the start time for the planning operation as epoch with millisecond precision
- getStatCall(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Obtains a stat at a certain position in the stat list.
- getStatCount() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Obtains the size of the stat list.
- getState() - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Returns the state.
- getState() - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Returns the state.
- getStatement(int) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Singleton manager for prepared statements.
- getStatement(int) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Singleton manager for prepared statements.
- getStatement(int) - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Singleton manager for prepared statements.
- getStatInfo() - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor
- getStatList() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Gets an array of all values that constitute the current content.
- getStatus() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getStatus() - Method in class edu.isi.pegasus.planner.invocation.Status
-
Accessor
- getStderr() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- getStdErr() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the file to which the stderr of the job is written to.
- getStdin() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Get the STDIN file object
- getStdIn() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the file from which the stdin is picked up.
- getStdout() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- getStdOut() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the file to which the stdout of the job is written to.
- getStorage() - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Returns the storage area on the head node.
- getStorage() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Returns the storage area on the head node.
- getStorageDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the storage directory suffix or absolute specified that is appended/replaced to the storage-mount-point specified in the pool catalog for the various pools.
- getStringValue(Object) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns a String value, that a particular key is mapped to in this namespace.
- getSubmissionCredential() - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the credential to use for job submission.
- getSubmitDirectory() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the path to the directory where the submit files are to be generated.
- getSubmitFileDir() - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Returns the directory where the user wants the submit files to be generated.
- getSubmitHostname() - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Returns the submit hostname
- getSubmitHostPathToPegasusLiteCommon() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Determines the path to common shell functions file that Pegasus Lite wrapped jobs use.
- getSubmitHostPathToPegasusLiteLocal() - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Determines the path to PegasusLite local job
- getSubmitHostPathToShellRunnerFunctions() - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Determines the path to common shell functions file that the generated shell script will use.
- getSubmitLogsDirectory() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the the path to the logs directory on the submit host.
- getSubmitMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns which submit mode to be used to submit the jobs on to the grid.
- getSupportedOperation() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the operation supported by the file server
- getSwaps() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains number of swap operations.
- getSyncJob(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns the current synch job for a site.
- getSyncJobBetweenLevelsName(String, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Returns the name of the job that acts as a synchronization node in between stage in jobs of different levels.
- getSysConfDir() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor to $PEGASUS_HOME/etc.
- getSysConfDir() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor to $PEGASUS_HOME/etc.
- getSysinfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
Returns the System information for a single site.
- getSysinfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the System information for a single site.
- getSysInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the System Information associated with the Site.
- getSysInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the System Information associated with the Site.
- getSysInfo() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the System Information associated with the transformation.
- getSysInfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns the
SysInfo
for the site - getSysInfoId(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Gets the id for the system information entry.
- getSysinfos(List) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
Returns the System information for a bunch of sites.
- getSysinfos(List) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the System information for a bunch of sites.
- getSysInfos(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
- getSystemName() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getSystemTime() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the system time from the object.
- getTag() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getTag() - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Accessor
- getTaskCount(Job) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
Returns the task count for a job.
- getTaskCount(Job) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Returns the task count for a job.
- getTC() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
-
Print all the contents of the TC in pretty print
- getTCEntry(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Helper method to get an entry from the transformation catalog for an installed executable.
- getTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Returns the TCEntry object for the rm executable on a grid stagingSite.
- getTCEntry(String) - Method in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Returns the TCEntry object for the rm executable on a grid site.
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Installed
-
Returns a list of TransformationCatalogEntry objects of type installed from a List of valid TCEntries
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Random
-
This method randomly selects one of the records from numerous valid Transformation Catalog Entries returned by the TCMapper.
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.RoundRobin
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Staged
-
Takes a list of TransformationCatalogEntry objects and returns 1 or many TransformationCatalogEntry objects as a list by selecting only Static stageable binary's
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.transformation.Submit
-
This method returns a list of TransformationCatalogEntry objects of type STATIC_BINARY and only available on the Submit machine( "local" site).
- getTCEntry(List) - Method in class edu.isi.pegasus.planner.selector.TransformationSelector
-
Takes a list of TransformationCatalogEntry objects and returns 1 or many TransformationCatalogEntry objects as a list depending on the type of selection algorithm.
- getTCList(String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
This method returns a List of TransformationCatalog Objects valid for a particular transformation and for a particular compute site
- getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Get the list of LogicalNames available on a particular resource.
- getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Get the list of LogicalNames available on a particular resource.
- getTCLogicalNames(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Get the list of LogicalNames available on a particular resource.
- getTCLogicalNames(String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Get the list of LogicalNames available on a particular resource.
- getTCMapperMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode for loading the transformation mapper that sits in front of the transformation catalog.
- getTCMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode to be used for accessing the Transformation Catalog.
- getTCPath() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the location of the transformation catalog.
- getTCXML() - Method in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
- getTempFilename() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Creates a temporary file and obtains its name.
- getTerminate() - Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
- getTextToPoolConfig(String) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Generates the old site catalog object reading in from text file.
- getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the comma separated list of third party sites, specified in the properties.
- getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns a set of third party sites.
- getThirdPartySites(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a set of third party sites.
- getThirdPartySitesRemote(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the comma separated list of third party sites for which the third party transfers are executed on the remote sites.
- getTimestamp() - Method in class edu.isi.pegasus.common.util.Version
- getTimeStamp() - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Gets the timestamp nicely formatted.
- getTo() - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
return the 'to' task
- getTotalNodes() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the total number of nodes that this grid gateway talks to.
- getTotalSize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Returns the total directory size.
- getTransfer() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the transfer type of the file
- getTransferArguments() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the arguments with which the transfer executable needs to be invoked.
- getTransferContainerIterator() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
Returns the iterator to the list of transfer containers.
- getTransferContainerIterator() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Returns the iterator to the list of transfer containers.
- getTransferFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the tristate transfer mode that is associated with the file.
- getTransferImplementation() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the transfer implementation that is to be used for constructing the transfer jobs.
- getTransferImplementation(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the transfer implementation.
- getTransferInterPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the priority to be set for the interpool transfer job.
- getTransferPriority(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the transfer priority.
- getTransferRefiner() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the transfer refiner that is to be used for adding in the transfer jobs in the workflow Referred to by the "pegasus.transfer.refiner" property.
- getTransferStageInPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the priority to be set for the stage in transfer job.
- getTransferStageOutPriority() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the priority to be set for the stage out transfer job.
- getTransformation() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getTransformation() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Returns the transformation name, and moves the scanner to hold the next
TransformationCatalogReservedWord
. - getTransformationCatalogEntry(String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the transformation catalog entry for kickstart on a site
- getTransformationCatalogEntry(String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Retrieves the transformation catalog entry for the executable that is being used to transfer the files in the implementation.
- getTransformationCatalogEntry(String, Profiles, boolean) - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Constructs a single transformation catalog entry and returns it.
- getTransformations() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Returns a set of Transformation Objects (complex executables) stored in the DAX based Transformation Catalog
- getTransformations(String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Returns a list of transformation names matching on a site and transformation type.
- getTransformationStore() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the Transformation Store
- getTransientRegFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the transient registration flag (the value of dontRegister).
- getTransientTransferFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns whether the transfer is transient or not.
- getTruncated() - Method in class edu.isi.pegasus.planner.invocation.Data
-
Accessor
- getTXJobName(int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Generates the name of the transfer job, that is unique for the given workflow.
- getTXJobName(int, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
Generates the name of the transfer job, that is unique for the given workflow.
- getTXJobName(int, int, int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Generates the name of the transfer job, that is unique for the given workflow.
- getTXName() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the name of the underlying transformation.
- getTXName() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Returns the name of the transfer job.
- getTXName() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Returns the name of the transfer job.
- getTXNamespace() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the namespace of the underlying transformation.
- getTXPoolEntry(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Gets the pool object to be used for the transfer universe.
- getTXSelectorMode() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the mode for loading the transformation selector that selects amongst the various candidate transformation catalog entry objects.
- getTXVersion() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the version of the underlying transformation.
- getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Directory
-
Set the type of directory
- getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Returns the type of this grid gateway.
- getType() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns the type of replica catalog.
- getType() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the type of the transformation.
- getType() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the tristate transfer mode that is associated with the file.
- getType() - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Get the type of the metdata object
- getUID() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getUID() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getUMask() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getUname() - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Obtains the utsname generic system information record.
- getUniverse() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the universe associated with the job.
- getUnsharedRSS() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- getUntarJobName(ADag, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It returns the name of the untar job, that is to be assigned.
- getUpLen() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
return the UpLength of this task.
- getURL() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServer
-
Returns the externally accessible URL composed of url prefix and the mount point
- getURL() - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Returns the url for the replica catalog.
- getURL() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Returns the LRC url associated with a pool.
- getURL() - Method in class edu.isi.pegasus.planner.dax.PFN
- getURL(Map, boolean) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a single url from the map passed.
- getURLFor(String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
Return a gsiftp:// URL for path
- getURLForRegistrationOnDestination() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Sets the registration url for the destination.
- getURLOnSharedScratch(SiteCatalogEntry, Job, FileServerType.OPERATION, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Returns a URL on the shared scratch of the staging site
- getURLPrefix() - Method in class edu.isi.pegasus.common.util.PegasusURL
-
Returns the url prefix associated with the PegasusURL.
- getURLPrefix() - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the url prefix .
- getURLPrefix(boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
A helper method that returns the url prefix for one of the gridftp server associated with the pool.
- getURLPrefix(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the url prefix of a gridftp server on the pool.
- getUsage() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getUsage() - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor
- getUseOfSymbolicLinks() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It returns whether the use of symbolic links in case where the source and destination files happen to be on the same file system.
- getUser() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the username.
- getUser() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getUser() - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor
- getUserTime() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the user time from the object.
- getUses() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- getUses() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Get the List of files and/or executables being used by the transformation
- getValue() - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the key value.
- getValue() - Method in enum edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
-
The value associated with the enum
- getValue() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
Returns the value of the architecture as string.
- getValue() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
Returns the value of the operating system as string.
- getValue() - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Returns the value associated with this tuple.
- getValue() - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Get the value of the metdata object
- getValue() - Method in class edu.isi.pegasus.planner.dax.Profile
-
Get the value of this profile
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Arguments
-
This abstract method is called by higher-level functions to obtain a single string representation of the arguments.
- getValue() - Method in class edu.isi.pegasus.planner.invocation.ArgVector
-
Returns the full argument vector as one single string.
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Boot
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.CPU
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Data
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.File
-
Accessor
- getValue() - Method in interface edu.isi.pegasus.planner.invocation.HasText
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Stamp
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.Uname
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Accessor
- getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.Identifier
-
Obtains the token value of a given reserved word token.
- getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.QuotedString
-
Obtains the token value of a given string token.
- getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
Obtains the token value of a given reserved word token.
- getValue() - Method in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
Obtains the token value of a given reserved word token.
- getValue() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool.ConditionVariable
-
Returns the value.
- getValue() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Returns the value associated with this pair.
- getValue(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Deprecated.
- getVDS_HOME(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the value of VDS_HOME for a site.
- getVDSHome() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Deprecated.
- getVDSHome() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Deprecated.
- getVDSHome(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Deprecated.
- getVDSKeyValue() - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Returns the value of the vds profile with key as VDS.GRIDSTART_KEY, that would result in the loading of this particular implementation.
- getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY, that would result in the loading of this particular implementation.
- getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY, that would result in the loading of this particular implementation.
- getVDSKeyValue() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the value of the vds profile with key as Pegasus.GRIDSTART_KEY, that would result in the loading of this particular implementation.
- getVDSProperties() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the VDS properties that were set by the user.
- getVDSProperties() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the CommonProperties that this object encapsulates.
- getVDSSuperNode() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the name of the compute job of Pegasus supernode containing this job.
- getVDSSysInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Returns the sysinfo for the site.
- getVDSSysInfo() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the sysinfo for the site.
- getVDSSysInfo() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns the System Information in the old VDS format associated with the transformation.
- getVDSSysInfo(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns the
VDSSysInfo
for the site - getVersion() - Method in class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback
-
Returns the condor version detected.
- getVersion() - Method in class edu.isi.pegasus.common.util.Version
- getVersion() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Returns the version
- getVersion() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Get the version of the executable
- getVersion() - Method in class edu.isi.pegasus.planner.dax.File
-
Get the version of the file
- getVersion() - Method in class edu.isi.pegasus.planner.dax.Job
- getVersion() - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Get the version of the transformation
- getVersion() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getVersionOfDAX(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
A convenience method that tries to determine the version of the dax schema by reading ahead in the DAX file, and searching for the version attribue in the file.
- getVOGroup() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the VO Group.
- getVOGroup() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the VO Group to which the user belongs
- getVoluntarySwitches() - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Obtains the voluntary context switches.
- getWhat() - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Get what to invoke
- getWhen() - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Get when to Invoke
- getWingsPropertiesFile() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the path to the wings properties file.
- getWingsRequestID() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns the request id.
- getWorkerNodeDirectory(Job) - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Returns the directory in which the job executes on the worker node.
- getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns the exectionSiteDirectory in which the constituentJob executes on the worker node.
- getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns the directory in which the job executes on the worker node.
- getWorkerNodeDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns the directory in which the job executes on the worker node.
- getWorkerNodeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Returns the worker node filesystem.
- getWorkerPackageMap() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to get the worker package
- getWorkerSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
Returns the directory shared amongst the worker nodes only.
- getWorkerSharedDirectory() - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
Returns the directory shared amongst the worker nodes only.
- getWorkflow() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in interface edu.isi.pegasus.planner.refiner.Refiner
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflow() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Returns a reference to the workflow that is being refined by the refiner.
- getWorkflowFileBasenamePrefix(PlannerOptions, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
- getWorkflowFileName(PlannerOptions, String, String, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Constructs the basename to a workflow file that.
- getWorkflowLabel() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the metrics about the workflow.
- getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the workflow metrics so far.
- getWorkflowMetrics() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the workflow metrics.
- getWorkflowTimestamp() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the UUID for the workflow
- getWorkflowUUID() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns the UUID for the workflow
- getWorkingDirectory() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor
- getWriter(Job) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Returns an open stream to the file that is used for writing out the job information for the job.
- getWriter(Job) - Method in class edu.isi.pegasus.planner.code.generator.HashedFile
-
Returns an open stream to the file that is used for writing out the job information for the job.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
- getXMLProducer() - Method in interface edu.isi.pegasus.planner.refiner.Refiner
-
Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
- getXMLProducer() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Returns a reference to the XMLProducer, that generates the XML fragment capturing the actions of the refiner.
- gftp - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- gftp - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- glibc - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Glibc version of the system
- GLIDEIN_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a glidein execution.
- GLIDEIN_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the Condor GlideIN Style.
- GLIDEINWMS_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a glideinwms execution.
- GLIDEINWMS_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the Condor GlideinWMS Style.
- GLite - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
This implementation enables a job to be submitted via gLite to a grid sites.
- GLite() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
The default Constructor.
- GLITE_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a glite execution.
- GLITE_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the CondorG Style.
- globallyIgnored(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a boolean indicating whether a site is to be ignored as a replica source for all compute sites.
- globallyPreferred(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a boolean indicating whether a site is a preferred replica source for all compute sites.
- globus - edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- globus - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- Globus - Class in edu.isi.pegasus.planner.namespace
-
This helper class helps in handling the globus rsl key value pairs that come through profile information for namespace Globus.
- Globus() - Constructor for class edu.isi.pegasus.planner.namespace.Globus
-
The default constructor.
- Globus(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Globus
-
The overloaded constructor
- GLOBUS - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- GLOBUS - Static variable in class edu.isi.pegasus.planner.classes.Profile
- GLOBUS_SCHEDULER_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Hints
-
The globus scheduler hints key
- GLOBUS_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a CondorG execution.
- GLOBUS_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the CondorG Style.
- GLOBUS_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for vanilla universe.
- GLOBUS_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the globus version of the grid ftp server.
- GLOBUS_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the globus version.
- globusRSL - Variable in class edu.isi.pegasus.planner.classes.Job
-
The namespace object containing the globus rsl attributes which the user specifies in the dax, or the pool file or the properties file.
- globusScheduler - Variable in class edu.isi.pegasus.planner.classes.Job
-
The globus Scheduler for the job.
- GlobusVersion - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that stores the globus version installed and to be used on a particular pool for the gridftp server or the jobmanagers.
- GlobusVersion() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
The default constructor.
- GlobusVersion(int, int, int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Constructor to set the version information
- GlobusVersion(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Overloaded constructor for the class;
- Graph - Interface in edu.isi.pegasus.planner.partitioner.graph
-
The interface for the Graph Class.
- GraphNode - Class in edu.isi.pegasus.planner.partitioner.graph
-
Data class that allows us to construct information about the nodes in the abstract graph.
- GraphNode() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The default constructor.
- GraphNode(String) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The overloaded constructor.
- GraphNode(String, GraphNodeContent) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The overloaded constructor.
- GraphNode(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The overloaded constructor.
- GraphNodeComparator() - Constructor for class edu.isi.pegasus.planner.partitioner.Horizontal.GraphNodeComparator
- GraphNodeContent - Interface in edu.isi.pegasus.planner.partitioner.graph
-
This inteface defines a common base for all the classes that can reside in a
GraphNode
object. - GRAY_COLOR - Static variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
- GrepCallback(String) - Constructor for class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
Overloaded Constructor.
- GRID_DN_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Grid DN of the user.
- GRID_FTP_STANDARD_PORT - Static variable in class edu.isi.pegasus.planner.refiner.Authenticate
-
The standard port at which Grid FTP runs.
- GRID_JOB_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies the grid job type.
- GRID_JOB_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Hints
-
The jobmanager universe key.
- GRID_RESOURCE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The key that designates the collector associated with the job
- GRID_RESOURCE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CreamCE
-
The key that designates the collector associated with the job
- GRID_RESOURCE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.SSH
-
The key that designates the collector associated with the job
- GRID_RESOURCE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor key for designation the grid_resource.
- GRID_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for grid universe.
- GRIDFTP - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the list of
GridFTP
objects for the remote site. - GRIDFTP - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "gridftp".
- GRIDFTP_RESOURCE - Static variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
The type identifying that the resource to authenticate against is a grid ftp server.
- GRIDFTP_URL - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the url.
- gridFTPAlive(String, int) - Method in class edu.isi.pegasus.planner.refiner.Authenticate
-
It checks with a grid ftp server running at a particular host and port, to see if it is up or not.
- GridFTPBandwidth - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class to store information about gridftp bandwidths between various sites.
- GridFTPBandwidth() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- GRIDFTPBANDWIDTHINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- GridFTPConnection - Class in edu.isi.pegasus.gridftp
-
A connection to a GridFTP server
- GridFTPConnection(String, int, GSSCredential) - Constructor for class edu.isi.pegasus.gridftp.GridFTPConnection
- GridFTPConnection.StringBuilderDataSink - Class in edu.isi.pegasus.gridftp
-
This class is used to collect data returned by the list command into a StringBuilder.
- GridFTPException - Exception in edu.isi.pegasus.gridftp
- GridFTPException(String) - Constructor for exception edu.isi.pegasus.gridftp.GridFTPException
- GridFTPException(String, Throwable) - Constructor for exception edu.isi.pegasus.gridftp.GridFTPException
- GRIDFTPINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Array storing the names of the attributes that are stored with the grid ftp server.
- GridFTPServer - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that is used to store information about a grid ftp server.
- GridFTPServer() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The default constructor.
- GridFTPURL - Class in edu.isi.pegasus.gridftp
- GridFTPURL(String) - Constructor for class edu.isi.pegasus.gridftp.GridFTPURL
- GridGateway - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This class describes the Grid Gateway into a site.
- GridGateway() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The default constructor.
- GridGateway(GridGateway.TYPE, String, GridGateway.SCHEDULER_TYPE) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The overloaded constructor.
- GridGateway.JOB_TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes
-
An enumeration of types of jobs handled by an instance of a grid gateway.
- GridGateway.SCHEDULER_TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes
-
An enumeration of valid schedulers on the grid gateway.
- GridGateway.TYPE - Enum in edu.isi.pegasus.planner.catalog.site.classes
-
An enumeration of valid types of grid gateway.
- GRIDLAUNCH - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the path to kickstart.
- GRIDLAUNCH - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "gridlaunch".
- gridstart(PrintWriter, Job, boolean) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
This function creates the stdio handling with and without gridstart.
- gridStart(String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Returns the cached implementation of GridStart from the implementing class table.
- GridStart - Interface in edu.isi.pegasus.planner.code
-
The interface that defines how a job specified in the abstract workflow is launched on the grid.
- GRIDSTART_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key, that determines the arguments with which the GridStart that is used to launch a job on the remote site is invoked with.
- GRIDSTART_IMPLEMENTING_CLASSES - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The known gridstart implementations.
- GRIDSTART_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key that determines the launching executable to be used to launch a job on the grid.
- GRIDSTART_PATH_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key that designates the path to a gridstart.
- GRIDSTART_PREJOB - Static variable in class edu.isi.pegasus.planner.namespace.ENV
-
The name of the environment variable that specifies the Gridstart PREJOB.
- GRIDSTART_SHORT_NAMES - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The corresponding short names for the implementations.
- GridStartFactory - Class in edu.isi.pegasus.planner.code
-
An abstract factory class to load the appropriate type of GridStart implementations, and their corresponding POSTScript classes.
- GridStartFactory() - Constructor for class edu.isi.pegasus.planner.code.GridStartFactory
-
The default constructor.
- GridStartFactoryException - Exception in edu.isi.pegasus.planner.code
-
Class to notify of failures while instantiating GridStart implementations.
- GridStartFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
Constructs a
GridStartFactoryException
with no detail message. - GridStartFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
Constructs a
GridStartFactoryException
with the specified detailed message. - GridStartFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
Constructs a
GridStartFactoryException
with the specified detailed message and a cause. - GridStartFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.code.GridStartFactoryException
-
Constructs a
GridStartFactoryException
with the specified detailed message and a cause. - Group - Class in edu.isi.pegasus.planner.selector.site
-
A site selector than ends up doing grouping jobs together on the basis of an identifier specifed in the dax for the jobs, and schedules them on to the same site.
- Group() - Constructor for class edu.isi.pegasus.planner.selector.site.Group
-
The default constructor.
- GROUP_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key in vds namespace that does the grouping.
- gt2 - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- gt4 - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- gt5 - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- GUC - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that is used to create transfer jobs that callout to the new globus-url-copy client, that support multiple file transfers
- GUC(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The overloaded constructor, that is called by the Factory to load the class.
- Gvds_Pool_Gridlaunch - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Gvds_Pool_Id - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Gvds_Pool_Lrc - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Gvds_Pool_Profile - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Gvds_Pool_Storage - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Gvds_Pool_Universe - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Gvds_Pool_WorkDir - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
H
- HANDLE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The name of the remote site.
- handleAdagTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the adag element is got.
- handleArgumentTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the end of the Argument Tag is reached.
- handleArgumentTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the Argument Tag is reached.
- handleChildTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
This passes the child and it's parents list to the callback object.
- handleChildTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the child element is got.
- handleCondorVarForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
It updates/adds the condor variables that are got through the Dax with the values specified in the properties file, pool config file or adds some variables internally.
- handleConfigTagEnd() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Handles the end of the Xml files.
- handleConfigTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Handles the end of the Xml files.
- handleConfigTagStart() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- handleConfigTagStart() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- handleDAGTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the end of the dag tag is reached.
- handleDAGTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the dax element is retrieved.
- handleDAXTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the end of the job tag is reached.
- handleDAXTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the dax element is retrieved.
- handleDependantExecutables(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Handles the dependant executables that need to be staged.
- handleEnvVarForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
It updates/adds the environment variables that are got through the Dax with the values specified in the properties file, pool config file or adds some variables internally.
- handleExecutionTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the end of the execution element is reached.
- handleExecutionTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Replaces the keys associated with the execution tag, with the corresponding keys in the hints profile namespace
- handleFilenameTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the filename element is got.
- handleGlobusRSLForJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
It updates/adds the the Globus RSL parameters got through the dax that are in Job object.
- handleGridFtpBandwidthTagEnd() - Static method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- handleGridFtpBandwidthTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- handleGridFtpBandwidthTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
sk added function to handle gridftpbandwidth tag
- handleGridFtpBandwidthTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
sk added function to handle gridftpbandwidth tag
- handleGridFtpTagEnd() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
sk made changes to the following function to set GRIDFTPServer instead of setting it in fn handleGridFtpTagStart()
- handleGridFtpTagEnd() - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
sk made changes to the following function to set GRIDFTPServer instead of setting it in fn handleGridFtpTagStart()
- handleGridFtpTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- handleGridFtpTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- handleJobManagerTagEnd() - Static method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Handles the end of the JobManager Tag
- handleJobManagerTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Handles the end of the JobManager Tag
- handleJobManagerTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
This method handles the start of a jobmanager tag.
- handleJobManagerTagStart(SiteInfo, Attributes) - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
This method handles the start of a jobmanager tag.
- handleJobTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the end of the job tag is reached.
- handleJobTagStart(Job) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the job element is got.
- handleJobTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the job element is got.
- handleLRCTagEnd() - Static method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Handles the end of the LRC Tag
- handleLRCTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Handles the end of the LRC Tag
- handleLRCTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- handleLRCTagStart(SiteInfo, Attributes) - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- handleMetadataTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Resets the text content buffer
- handleMetadataTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Metadata parsing is ignored for time being.
- handleParentTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the parent element is got.
- handlePoolTagEnd() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Handles the end of the pool tag.
- handlePoolTagEnd() - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Handles the end of the pool tag.
- handlePoolTagStart(PoolConfig, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- handlePoolTagStart(PoolConfig, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- handleProfileTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the end of the profile element is got.
- handleProfileTagEnd(SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Handles the end of the Profile tag.
- handleProfileTagEnd(SiteInfo) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Handles the end of the Profile tag.
- handleProfileTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- handleProfileTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- handleProfileTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the profile element is got.
- handleRescueDAG(ADag, PlannerOptions) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Checks for rescue dags, and determines whether to plan or not.
- handleRescueDAG(String, String, int) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Checks for rescue dags, and determines whether to submit a rescue dag or not.
- handleStderrTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the stdout tag is reached.
- handleStdinTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the stdin tag is reached.
- handleStdoutTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the stdout tag is reached.
- handleTransferOfExecutable(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
It changes the paths to the executable depending on whether we want to transfer the executable or not.
- handleTransferOfExecutable(Job, String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
It changes the paths to the executable depending on whether we want to transfer the executable or not.
- handleUsesPFNTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when start of the pfn element nested in uses element is encountered
- handleUsesTagEnd() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Handles the end of a uses tag.
- handleUsesTagStart(String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Invoked when the starting of the uses element is got.
- handleWorkDirectoryTagEnd(SiteInfo) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
This method handles the Workdirectory tg end.
- handleWorkDirectoryTagEnd(SiteInfo) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
This method handles the Workdirectory tg end.
- handleWorkDirectoryTagStart(SiteInfo, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Handles the WorkDirectory Tag Start.
- handleWorkDirectoryTagStart(SiteInfo, Attributes) - Static method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
Handles the WorkDirectory Tag Start.
- hasAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Checks for the existence of an attribute key.
- HasDescriptor - Interface in edu.isi.pegasus.planner.invocation
-
This interface defines a common base for all File elements in an invocation record that carry a descriptor in their values.
- HasFilename - Interface in edu.isi.pegasus.planner.invocation
-
This interface defines a common base for all File elements in an invocation record that carry a filename in their values.
- hasFileServerForGETOperations() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
A convenience method that retrieves whether the directory has a file server for get operations ( file server with type get and all )
- hasFileServerForOperations(FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
A convenience method that retrieves whether the directory has a file server for a particular operation.
- hasFileServerForPUTOperations() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
A convenience method that retrieves whether the directory has a file server for put operations ( file server with type put and all )
- hashCode() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- hashCode() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- hashCode() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Calculate a hash code value for the object to support hash tables.
- hashCode() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Calculate a hash code value for the object to support hash tables.
- hashCode() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- hashCode() - Method in class edu.isi.pegasus.planner.dax.Edge
- hashCode() - Method in class edu.isi.pegasus.planner.dax.Executable
- hashCode() - Method in class edu.isi.pegasus.planner.dax.File
-
HashCode of this File
- hashCode() - Method in class edu.isi.pegasus.planner.dax.Transformation
- hashCode() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Calculate a hash code value for the object to support hash based Collections.
- Hashed - Class in edu.isi.pegasus.planner.transfer.mapper.impl
-
Maps the output files in a Hashed Directory structure on the output site.
- Hashed() - Constructor for class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
- HASHED_OUTPUT_MAPPER_IMPLEMENTATION - Static variable in class edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactory
-
The Hashed mapper implementation to be used.
- HashedFile - Class in edu.isi.pegasus.planner.code.generator
-
A Condor Submit Writer, that understands the notion of hashed file directories.
- HashedFile() - Constructor for class edu.isi.pegasus.planner.code.generator.HashedFile
-
The default constructor.
- hashedOutputMapperUsed(PegasusProperties) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns a boolean indicating whether the Hashed Output Mapper was used or not
- hasMatchingAttr(ReplicaCatalogEntry, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Looks for a match of an attribute value in a replica catalog entry.
- hasMatchingAttr(ReplicaCatalogEntry, String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Looks for a match of an attribute value in a replica catalog entry.
- hasMoreTokens() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Checks for the availability of more input.
- hasMoreTokens() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Checks for the availability of more input.
- hasNext() - Method in class edu.isi.pegasus.planner.namespace.Namespace.EmptyIterator
-
Always returns false, as an empty iterator.
- hasNext() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.BottomUpIterator
-
Always returns false, as an empty iterator.
- hasNext() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
Always returns false, as an empty iterator.
- hasNext() - Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
Returns whether there are more nodes to be traversed in the graph or not.
- HasText - Interface in edu.isi.pegasus.planner.invocation
-
This interface defines a common base for all elements in an invocation record that can carry text in their values.
- hasWorkflowRefinementStarted() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns a boolean indicating whether the workflow refinement has started or not
- HEAD_INDEX - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The index of the head job.
- HEADFS_SCRATCH - edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor.DirectoryTypes
- HEADFS_STORAGE - edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor.DirectoryTypes
- HeadNodeFS - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes the HeadNode Filesystem layout.
- HeadNodeFS() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
The default constructor.
- HeadNodeFS(HeadNodeScratch, HeadNodeStorage) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
The overloaded constructor.
- HeadNodeScratch - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes the scratch area on a head node.
- HeadNodeScratch() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch
-
The default constructor
- HeadNodeScratch(LocalDirectory, SharedDirectory) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch
-
The overloaded constructor.
- HeadNodeScratch(StorageType) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch
-
The overloaded constructor
- HeadNodeStorage - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes the storage area on a node.
- HeadNodeStorage() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage
-
The default constructor
- HeadNodeStorage(LocalDirectory, SharedDirectory) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage
-
The overloaded constructor.
- HeadNodeStorage(StorageType) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage
-
The overloaded constructor
- Heft - Class in edu.isi.pegasus.planner.selector.site
-
The HEFT based site selector.
- Heft() - Constructor for class edu.isi.pegasus.planner.selector.site.Heft
-
The default constructor.
- HEFT(int) - Method in class edu.isi.pegasus.planner.provisioner.Estimator
- HeftBag - Class in edu.isi.pegasus.planner.selector.site.heft
-
A data class that implements the Bag interface and stores the extra information that is required by the HEFT algorithm for each node.
- HeftBag() - Constructor for class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The default constructor.
- HeftGraphNodeComparator - Class in edu.isi.pegasus.planner.selector.site.heft
-
Comparator for GraphNode objects that allow us to sort on basis of the downward rank computed.
- HeftGraphNodeComparator() - Constructor for class edu.isi.pegasus.planner.selector.site.heft.HeftGraphNodeComparator
- HEFTINFO - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
Array storing the names of the attributes that are stored with the site.
- HIGHEST_RANK_VALUE - Static variable in class edu.isi.pegasus.planner.selector.replica.Regex
-
The highest value of rank.
- hints - edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- hints - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- hints - Variable in class edu.isi.pegasus.planner.classes.Job
-
To accomodate all the hints that maybe passed through the DAX.
- Hints - Class in edu.isi.pegasus.planner.namespace
-
An empty mechanical implementation for the namespace.
- Hints() - Constructor for class edu.isi.pegasus.planner.namespace.Hints
-
The default constructor.
- Hints(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Hints
-
The overloaded constructor.
- HINTS - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- HINTS - Static variable in class edu.isi.pegasus.planner.classes.Profile
- Horizontal - Class in edu.isi.pegasus.planner.cluster
-
The horizontal clusterer, that clusters jobs on the same level.
- Horizontal - Class in edu.isi.pegasus.planner.partitioner
-
Horizontal based partitioning scheme, that allows the user to configure the number of partitions per transformation name per level.
- Horizontal() - Constructor for class edu.isi.pegasus.planner.cluster.Horizontal
-
The default constructor.
- Horizontal(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.Horizontal
-
The overloaded constructor.
- HORIZONTAL_CLUSTERING_CLASS - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The name of the class implementing horizontal clustering.
- HORIZONTAL_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
The name of the class that does horizontal based partitioning.
- Horizontal.GraphNodeComparator - Class in edu.isi.pegasus.planner.partitioner
-
A GraphNode comparator, that allows us to compare nodes according to the transformation logical names.
- Horizontal.JobComparator - Class in edu.isi.pegasus.planner.cluster
-
A job comparator, that allows me to compare jobs according to the transformation names.
- host - Variable in class edu.isi.pegasus.gridftp.GridFTPConnection
- Host_Subnet_Id - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- HostPort(String, int) - Constructor for class edu.isi.pegasus.planner.refiner.Authenticate.HostPort
-
The overloaded constructor
- HourGlass - Class in edu.isi.pegasus.planner.refiner.createdir
-
This class inserts the nodes for creating the random directories on the remote execution pools.
- HourGlass() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.HourGlass
I
- ia64 - edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- ia64 - edu.isi.pegasus.planner.dax.Executable.ARCH
- IA64 - edu.isi.pegasus.planner.dax.Executable.ARCH
- id - Variable in class edu.isi.pegasus.planner.provisioner.Node
- idCounter() - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Returns the current value of the ID counter.
- Identifier - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to capture reserved words.
- Identifier(String) - Constructor for class edu.isi.pegasus.planner.parser.tokens.Identifier
-
Initializes an instance of an identifier.
- IDLE_NODES - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the idle nodes.
- ignorableWhitespace(char[], int, int) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- ignorableWhitespace(char[], int, int) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Currently, ignorable whitespace will be ignored.
- ignore(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Helper method to decide whether a key has to be ignored or not.
- ignore(String, String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a boolean indicating whether a source site is to be ignored for staging to a destination site
- Ignore - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- Ignore() - Constructor for class edu.isi.pegasus.planner.invocation.Ignore
-
Default c'tor.
- Ignore(String) - Constructor for class edu.isi.pegasus.planner.invocation.Ignore
-
Constructs a piece of data.
- ignoreWhitespace(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Our own implementation for ignorable whitespace.
- ignoreWhitespace(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Our own implementation for ignorable whitespace.
- ignoreWhitespace(String) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Our own implementation for ignorable whitespace.
- ignoreWhitespace(String, boolean) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Our own implementation for ignorable whitespace.
- ignoreWhitespace(String, boolean) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Our own implementation for ignorable whitespace.
- Implementation - Interface in edu.isi.pegasus.planner.refiner.createdir
-
The interface that defines how the create dir job is created.
- Implementation - Interface in edu.isi.pegasus.planner.transfer
-
The interface defines the functions that a particular Transfer Implementation should implement.
- ImplementationFactory - Class in edu.isi.pegasus.planner.transfer.implementation
-
The factory class that loads an appropriate Transfer Immplementation class, as specified by the properties.
- ImplementationFactory() - Constructor for class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
- implementingClassNameTable() - Static method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
Returns a table that maps, the credential types to the implementing classes.
- implementingClassNameTable() - Static method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
Returns a table that maps, the Pegasus style keys to the names of implementing classes.
- implementingClassNameTable() - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
Returns a table that maps, the Pegasus style keys to the names of implementing classes.
- implementingPOSTScriptClass(String) - Static method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Returns the name of the implementing POSTSCript class.
- incorporateHint(Job, String) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
It incorporates a hint in the namespace to the job.
- incorporateProfiles(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Incorporates the profiles from the various sources into the job.
- increment() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool.ConditionVariable
-
It increments the value by 1.
- increment() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Increments the int value by one.
- increment(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Increment the metrics when on the basis of type of job.
- incrementIDCounter() - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Increments the ID counter by 1.
- incrementIndentIndex() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
Increments the indent index
- incrementJobMetrics(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Increment the metrics when on the basis of type of job.
- incrementLogging() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Increments the logging level by 1.
- incrementLogging() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Increments the logging level by 1.
- incrementLogging() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Increments the logging level by 1.
- incrementTaskMetrics(Job) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Increment the metrics when on the basis of type of job.
- indent(int) - Method in class edu.isi.pegasus.common.util.XMLWriter
- INDENT - Static variable in class edu.isi.pegasus.common.util.XMLWriter
- index(String) - Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
Returns the index of a particular node.
- index(String) - Method in class edu.isi.pegasus.planner.partitioner.Topological
-
Returns the index of a particular node.
- inEdges - Variable in class edu.isi.pegasus.planner.provisioner.Node
- INFO_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a INFO message.
- INFO_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate an INFORMATIVE message.
- infoAboutAllFilesRecv - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
A boolean variable set to true when we have got all the logical filenames.
- init() - Static method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage.Log4jFilter
- init() - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
initiate bit and completion time variable used bt HEFT algorithm
- init() - Method in class edu.isi.pegasus.planner.provisioner.Node
- initalize(String[]) - Method in class edu.isi.pegasus.planner.client.PartitionDAX
-
Initialize the PartitionDax object
- initialiseList(List) - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
It initialises the internal list.
- initialize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Initializes the object
- initialize() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The intialize method.
- initialize() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
Intializes the store.
- initialize() - Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
Initializes the inDegree for each node of the partition.
- initialize() - Method in class edu.isi.pegasus.planner.partitioner.Topological
-
Initializes the inDegree for each node of the partition.
- initialize(LogFormatter, Properties) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the log formatter to use for formatting the messages.
- initialize(LogFormatter, Properties) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the log formatter to use for formatting the messages.
- initialize(LogFormatter, Properties) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets the log formatter to use for formatting the messages.
- initialize(ADag) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Initialize with the scheduled graph.
- initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Initializes the Clusterer impelementation
- initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Initializes the JobAggregator impelementation
- initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
Initializes the Factory.
- initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Initializes the JobAggregator impelementation
- initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Initializes the JobAggregator impelementation
- initialize(ADag, PegasusBag) - Method in interface edu.isi.pegasus.planner.cluster.Clusterer
-
Initializes the Clusterer impelementation
- initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Initializes the Clusterer impelementation
- initialize(ADag, PegasusBag) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Initializes the JobAggregator impelementation
- initialize(ADag, PegasusBag) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Intialises the refiner.
- initialize(ADag, PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Intialises the refiner.
- initialize(PegasusBag) - Method in interface edu.isi.pegasus.common.credential.CredentialHandler
-
Initializes the credential implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
Initializes the Factory.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.common.credential.impl.Abstract
-
Initializes the credential implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.common.credential.impl.Irods
-
Initializes the credential implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.common.credential.impl.Proxy
-
Initializes the credential implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.common.credential.impl.S3CFG
-
Initializes the credential implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.common.credential.impl.Ssh
-
Initializes the credential implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Initialize the implementation, and return an instance of the implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Initialize the implementation, and return an instance of the implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Initialize the implementation, and return an instance of the implementation.
- initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Initialize the implementation, and return an instance of the implementation.
- initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.code.CodeGenerator
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
Initializes the Factory.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Metrics
-
Initializes the object
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.PBS
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.PMC
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Stampede
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.code.generator.Stork
-
Initializes the Code Generator implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Creates a new instance of InPlace
- initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupImplementation
-
Intializes the class.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Intializes the class.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
Intializes the class.
- initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Implementation
-
Intializes the class.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.Abstract
-
Initializes the site selector.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.Group
-
Initializes the site selector.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.Heft
-
Initializes the site selector.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Initializes the site selector.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.selector.site.Random
-
Initializes the site selector.
- initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.selector.SiteSelector
-
Initializes the site selector.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Initializes the SLS implementation.
- initialize(PegasusBag) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Initializes the SLS implementation.
- initialize(PegasusBag) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Initializes the SLS implementation.
- initialize(PegasusBag, CredentialHandlerFactory) - Method in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle
-
Initializes the Code Style implementation.
- initialize(PegasusBag, CredentialHandlerFactory) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Initializes the Code Style implementation.
- initialize(PegasusBag, CredentialHandlerFactory) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Initializes the Code Style implementation.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.classes.PlannerCache
-
Initialize the replica catalog instances that make up the cache.
- initialize(PegasusBag, ADag) - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Initializes the GridStart implementation.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Initializes the GridStart implementation.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Initializes the GridStart implementation.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Initializes the GridStart implementation.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Initializes the factory with known GridStart implementations.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Initializes the mappers.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Initializes the mappers.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Flat
-
Initializes the mappers.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
Initializes the mappers.
- initialize(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
Initializes the mappers.
- initialize(PegasusBag, ADag) - Method in interface edu.isi.pegasus.planner.transfer.mapper.OutputMapper
-
Initializes the mappers.
- initialize(PegasusBag, ADag, PrintWriter) - Method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Initializes the class.
- initialize(PegasusBag, CleanupImplementation) - Method in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupStrategy
-
Intializes the class.
- initialize(PegasusBag, CleanupImplementation) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Intializes the class.
- initialize(PegasusBag, Implementation) - Method in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Intializes the class.
- initialize(PegasusBag, Implementation) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
Intializes the class.
- initialize(PegasusBag, Implementation) - Method in class edu.isi.pegasus.planner.refiner.createdir.Minimal
-
Intializes the class.
- initialize(PegasusBag, Implementation) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Strategy
-
Intializes the class.
- initialize(PegasusBag, Implementation) - Method in class edu.isi.pegasus.planner.refiner.createdir.Tentacles
-
Intializes the class.
- initialize(PegasusBag, String) - Method in interface edu.isi.pegasus.planner.parser.dax.Callback
-
The overloaded constructor.
- initialize(PegasusBag, String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The overloaded constructor.
- initialize(PegasusBag, String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The overloaded constructor.
- initialize(PegasusBag, String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
The overloaded constructor.
- initialize(PegasusBag, String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
The overloaded constructor.
- initialize(PegasusBag, String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
The overloaded constructor.
- initialize(PegasusBag, String) - Method in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
-
The overloaded constructor.
- initialize(PegasusBag, List, String) - Method in class edu.isi.pegasus.planner.ranking.Rank
-
Initializes the rank client.
- initialize(PegasusProperties, Clusterer) - Method in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
Initializes the callback.
- initialize(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Initialize the POSTScript implementation.
- initialize(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
Initialize the POSTScript implementation.
- initialize(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Initialize the POSTScript implementation.
- initialize(PegasusProperties, String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
Initialize the POSTScript implementation.
- initialize(PegasusProperties, String, String) - Method in interface edu.isi.pegasus.planner.code.POSTScript
-
Initialize the POSTScript implementation.
- initialize(PegasusProperties, String, String, String) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Initializes the Writer Callback.
- initialize(Writer) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
Initialize the visitor implementation
- initialize(Writer) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Initialize the visitor implementation
- initialize(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Initializes the object.
- initialize(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Initializes the object.
- initialize(String[]) - Method in class edu.isi.pegasus.planner.client.Executable
-
Initialize the executable object
- initialize(String[]) - Method in class edu.isi.pegasus.planner.client.RankDAX
- initialize(String[]) - Method in class edu.isi.pegasus.planner.client.SCClient
- initialize(String[]) - Method in class edu.isi.pegasus.planner.client.TCClient
- initialize(String[]) - Method in class edu.isi.pegasus.planner.client.TCConverter
- initialize(String[]) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
- initialize(String[], char) - Method in class edu.isi.pegasus.planner.client.CPlanner
- initialize(String[], char) - Method in class edu.isi.pegasus.planner.client.Executable
-
Initialize the executable object
- initialize(String[], char) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Initialize the RCClient object
- initialize(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Initializes the object.
- initialize(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Initialize the class.
- initialize(String, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.BundleValue
-
Initializes the implementation
- initialize(String, String, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
Initializes the implementation
- initialize(Map<FileServerType.OPERATION, List<FileServer>>, InternalMountPoint) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Initializes the object
- initializeBundleValues() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Initializes the bundle value variables, that are responsible determining the bundle values.
- initializeBundleValues() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Initializes the bundle value variables, that are responsible determining the bundle values.
- initializeClusterValues() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Initializes the bundle value variables, that are responsible determining the bundle values.
- initializeDagFileWriter(String, ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Initializes the file handler to the dag file and writes the header to it.
- initializeDatabase(String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Initialize the database with given .sql file
- initializePropertyFile(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Gets the handle to the properties file.
- initializeWorkflowCacheFile(ADag) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Initializes a Replica Catalog Instance that is used to store the GET URL's for all files on the staging site ( inputs staged and outputs created ).
- initializeWriteHandle(int) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
This initializes the write handle a file in directory specified when creating the instance of this class.
- initializeWriteHandle(String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
It initializes the write handle to the output file.
- initializeWriteHandle(String) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
This initializes the write handle to the file in directory specified when creating the instance of this class.
- initOut(boolean, long) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
notify child nodes that this task will finish at time et
- InMemory - Class in edu.isi.pegasus.planner.provenance.pasoa.producer
-
An implementation of the XMLProducer interface backed by a StringBuffer.
- InMemory() - Constructor for class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
The default constructor.
- InMemory(int) - Constructor for class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
The overloaded constructor.
- inout - edu.isi.pegasus.planner.dax.File.LINK
- INOUT - edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
- INOUT - edu.isi.pegasus.planner.dax.File.LINK
- inplace - edu.isi.pegasus.planner.classes.PlannerOptions.CLEANUP_OPTIONS
- InPlace - Class in edu.isi.pegasus.planner.refiner.cleanup
-
This generates cleanup jobs in the workflow itself.
- InPlace() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The default constructor.
- input - edu.isi.pegasus.planner.dax.File.LINK
- INPUT - edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
- INPUT - edu.isi.pegasus.planner.dax.File.LINK
- inputFiles - Variable in class edu.isi.pegasus.planner.classes.Job
-
Contains the input files for the submit file.
- insert(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
- insert(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Not implemented as yet.
- insert(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Not implemented as yet.
- insert(SiteCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog
-
Inserts a new mapping into the Site catalog.
- insert(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add single TCEntry to the Catalog.
- insert(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add single TCEntry to the Catalog.
- insert(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add single TCEntry to the Catalog.
- insert(TransformationCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Add single TCEntry to the Catalog.
- insert(TransformationCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add single TCEntry object temporarily to the in memory Catalog.
- insert(TransformationCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add single TCEntry object temporarily to the in memory Catalog.
- insert(TransformationCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add single TCEntry object temporarily to the in memory Catalog.
- insert(TransformationCatalogEntry, boolean) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Add single TCEntry object temporarily to the in memory Catalog.
- insert(Job) - Method in class edu.isi.pegasus.planner.selector.site.Group
-
Inserts the job into the group map.
- insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Inserts a new mapping into the replica catalog.
- insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Inserts a new mapping into the replica catalog.
- insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Inserts a new mapping into the replica catalog.
- insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Inserts a new mapping into the replica catalog.
- insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Inserts a new mapping into the replica catalog.
- insert(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Inserts a new mapping into the replica catalog.
- insert(String, ReplicaCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Inserts a new mapping into the replica catalog.
- insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Inserts a new mapping into the replica catalog.
- insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Inserts a new mapping into the replica catalog.
- insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Inserts a new mapping into the replica catalog.
- insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Inserts a new mapping into the replica catalog.
- insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Inserts a new mapping into the replica catalog.
- insert(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Inserts a new mapping into the replica catalog.
- insert(String, String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Inserts a new mapping into the replica catalog.
- insert(String, String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.classes.PlannerCache
-
Inserts a new entry into the cache.
- insert(String, String, String, String, TCType, String, List, List, SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add an single entry into the transformation catalog.
- insert(String, String, String, String, TCType, String, List, List, SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add an single entry into the transformation catalog.
- insert(String, String, String, String, TCType, String, List, List, SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add an single entry into the transformation catalog.
- insert(String, String, String, String, TCType, String, List, List, SysInfo) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Add an single entry into the transformation catalog.
- insert(String, String, String, String, String, Date, Date, int) - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Inserts a new mapping into the work catalog.
- insert(String, String, String, String, String, Date, Date, int) - Method in interface edu.isi.pegasus.planner.catalog.WorkCatalog
-
Inserts a new mapping into the work catalog.
- insert(List<TransformationCatalogEntry>) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Add multiple TCEntries to the Catalog.
- insert(List<TransformationCatalogEntry>) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Add multiple TCEntries to the Catalog.
- insert(List<TransformationCatalogEntry>) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Add multiple TCEntries to the Catalog.
- insert(List<TransformationCatalogEntry>) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Add multiple TCEntries to the Catalog.
- insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Inserts multiple mappings into the replica catalog.
- insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Inserts multiple mappings into the replica catalog.
- insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Inserts multiple mappings into the replica catalog.
- insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Inserts multiple mappings into the replica catalog.
- insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Inserts multiple mappings into the replica catalog.
- insert(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Inserts multiple mappings into the replica catalog.
- insert(Map) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Inserts multiple mappings into the replica catalog.
- Installed - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
-
This class only generates maps for sites with installed transformations.
- Installed - Class in edu.isi.pegasus.planner.selector.transformation
-
This implementation of the Selector returns a list of TransformationCatalogEntry objects of type INSTALLED y on the submit site.
- Installed() - Constructor for class edu.isi.pegasus.planner.selector.transformation.Installed
- Installed(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.Installed
-
The protected constructor.
- INSTALLED - edu.isi.pegasus.planner.catalog.transformation.classes.TCType
- instance() - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Singleton threading: Creates the one and only instance of the properties in the current application.
- instance() - Static method in class edu.isi.pegasus.common.util.Version
-
Deprecated.Just create a new instance
- instantiate(Class[], Object[]) - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Dynamically instantiates a class from a contructor.
- instantiate(Object[]) - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Dynamically instantiates a class from a contructor.
- instantiateFileFactory(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Method that instantiates the FileFactory
- instantiateFileFactory(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Flat
-
Instantiates a Flat File Factory and returns it.
- instantiateFileFactory(PegasusBag, ADag) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
Method that instantiates the FileFactory
- INTEL32 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- INTEL64 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- INTER_POOL_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that transfers the output of a compute node to the site where the child compute node is to be generated.
- INTER_POOL_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
-
The prefix for the jobs which are added to transfer the files generated by the parents of a job to the jobs execution pool.
- INTER_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
The constant to denote that an inter site transfer is to be exectuted remotely
- INTER_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which inter site transfers need to be TPT.
- INTER_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that an inter site transfer is to be executed on the remote site.
- INTER_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which inter site TPT transfers need to be executed on the remote site.
- INTER_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that an inter site transfer is to be third party.
- INTER_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The property name to get the sites for which inter site transfers need to be executed remotely.
- InternalMountPoint - Class in edu.isi.pegasus.planner.catalog.site.classes
-
A data class to signify the Internal Mount Point for a filesystem.
- InternalMountPoint() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint
-
The default constructor.
- InternalMountPoint(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint
-
The overloaded constructor.
- InternalMountPoint(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint
-
The overloaded constructor.
- interOnRemoteSite(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns a boolean indicating whether to execute inter site transfers on remote site or not.
- InterPoolEngine - Class in edu.isi.pegasus.planner.refiner
-
This engine calls out to the Site Selector selected by the user and maps the jobs in the workflow to the execution pools.
- InterPoolEngine(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Overloaded constructor.
- InterPoolEngine(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Default constructor.
- interThirdParty(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to use third party transfers for inter site transfers or not.
- interThirdPartyRemote(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to execute third party transfers for inter site on remote site or not.
- intialize(String[]) - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Initialize the PegasusGetSites object
- intializeRCAsCache(ADag, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.classes.PlannerCache
-
Initializes the transient replica catalog and returns a handle to it.
- introduceRootDependencies(ADag, Job) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
It traverses through the root jobs of the dag and introduces a new super root node to it.
- intValue(String) - Static method in class edu.isi.pegasus.common.util.CondorVersion
-
Deprecated.
- invalidAttribute(String, String, String) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Logs a message if an unknown key is come across, while parsing the xml document.
- invalidValue(String, String, String) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Logs a message if an unknown value is come across, while parsing the xml document.
- Invocation - Class in edu.isi.pegasus.planner.invocation
-
This abstract class defines a common base for all invocation record related Java objects.
- Invocation() - Constructor for class edu.isi.pegasus.planner.invocation.Invocation
- INVOCATION - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The constant string to write for invocation notifications.
- InvocationParser - Class in edu.isi.pegasus.planner.parser
-
This class uses the Xerces SAX2 parser to validate and parse an XML document which contains information from kickstart generated invocation record.
- InvocationParser(String) - Constructor for class edu.isi.pegasus.planner.parser.InvocationParser
-
The class constructor.
- InvocationRecord - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for an invocation record.
- InvocationRecord() - Constructor for class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- invocationString(Job, File) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Constructs a command line invocation for a job, with a given sls file.
- invocationString(Job, File) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Constructs a command line invocation for a job, with a given sls file.
- invocationString(Job, File) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Constructs a command line invocation for a job, with a given sls file.
- Invoke - Class in edu.isi.pegasus.planner.dax
-
The Notification invoke object for the Dax API
- Invoke(Invoke) - Constructor for class edu.isi.pegasus.planner.dax.Invoke
-
Copy Constructor
- Invoke(Invoke.WHEN) - Constructor for class edu.isi.pegasus.planner.dax.Invoke
-
Crete a new Invoke object
- Invoke(Invoke.WHEN, String) - Constructor for class edu.isi.pegasus.planner.dax.Invoke
-
Create a new Invoke object
- Invoke.WHEN - Enum in edu.isi.pegasus.planner.dax
-
WHEN To INVOKE
- irods - edu.isi.pegasus.common.credential.CredentialHandler.TYPE
- Irods - Class in edu.isi.pegasus.common.credential.impl
-
A convenience class that allows us to determine the path to the user irodsEnvFile file.
- Irods() - Constructor for class edu.isi.pegasus.common.credential.impl.Irods
-
The default constructor.
- IRODS_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
- IRODSENVFILE - Static variable in class edu.isi.pegasus.common.credential.impl.Irods
-
The name of the environment variable that specifies the path to the irods configuration file.
- IRODSENVFILE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
- IRODSENVFILE_PEGASUS_PROFILE_KEY - Static variable in class edu.isi.pegasus.common.credential.impl.Irods
- isAnc(Node) - Method in class edu.isi.pegasus.planner.provisioner.Node
- isAsciiPrintable(char) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Checks whether the character is ASCII 7 bit printable.
- isAvailable() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
Returns whether a thread is available to do some work or not.
- isBottom() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
Check whether this task is the exit task or not.
- isClosed() - Method in interface edu.isi.pegasus.planner.catalog.Catalog
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Returns if the connection is closed or not.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Returns if the connection is closed or not.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Returns if the connection is closed or not.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Returns whether the connection is closed or not.
- isClosed() - Method in class edu.isi.pegasus.planner.catalog.work.Database
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isClosed() - Method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Predicate to check, if the connection with the catalog's implementation is still active.
- isColor(int) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns if the color of the node is as specified.
- isDAG() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Is this Object a DAG
- isDAG() - Method in class edu.isi.pegasus.planner.dax.DAG
-
Is this Object a DAG
- isDAX() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Is this Object a DAX
- isDAX() - Method in class edu.isi.pegasus.planner.dax.DAX
-
Is this Object a DAX
- isDeleted - Variable in class edu.isi.pegasus.planner.classes.PCRelation
-
this is used for collapsing the dag during the reduction algorithm on the basis of the results returned from the Replica Catalog.
- isDes(Node) - Method in class edu.isi.pegasus.planner.provisioner.Node
- isDirectory() - Method in class edu.isi.pegasus.gridftp.FileInfo
- isEmpty() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns a boolean indicating if the object is empty.
- isEmpty() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
A convenience method that returns true if all the attributes values are uninitialized or empty strings.
- isEmpty() - Method in class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint
-
A convenience method that returns true if all the attributes values are uninitialized or empty strings.
- isEmpty() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns a boolean if there are no nodes in the graph.
- isEmpty() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a boolean if there are no nodes in the graph.
- isEmpty() - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Returns a boolean indicating whether the notifications object is empty or not.
- isEmpty() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns a boolean indicating whether a store is empty or not.
- isEmpty() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns a boolean indicating if the object is empty.
- isEmpty() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns a boolean if there are no nodes in the graph.
- isEmpty() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns a boolean if there are no nodes in the graph.
- isExecutable() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns a boolean indicating if a file that is being staged is an executable or not (i.e is a data file).
- isExecutable() - Method in class edu.isi.pegasus.planner.dax.CatalogType
- isExecutable() - Method in class edu.isi.pegasus.planner.dax.Executable
- isFile() - Method in class edu.isi.pegasus.planner.dax.CatalogType
- isFile() - Method in class edu.isi.pegasus.planner.dax.File
- isFree() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
used for DSC algorithm
- isFSWritten - Variable in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Ensure that Directory information is written only once.
- isIdenticalTo(String, String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
isIdenticalTo
- isIdenticalTo(String, String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- isInteger(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Returns a boolean indicating whether the value represented is an integer or not.
- isInteger(String) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns a boolean value indicating if the string passed is an integer or not
- isJob() - Method in class edu.isi.pegasus.planner.dax.AbstractJob
-
Is this Object a Job
- isJob() - Method in class edu.isi.pegasus.planner.dax.Job
-
Is this Object a Job
- islfn - Variable in class edu.isi.pegasus.planner.client.TCClient
- isMPIJob() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns a boolean value denoting whether the job is MPI or not.
- isNamespaceValid(String) - Static method in class edu.isi.pegasus.planner.namespace.Namespace
-
Checks if the namespace specified is valid or not.
- isNodeIdValid(String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
- iso8601(boolean) - Static method in class edu.isi.pegasus.common.util.Currently
-
Ignores any internal date format, and tries to show a complete date/timp stamp of the current time in extended ISO 8601 format.
- iso8601(boolean, boolean, boolean, Date) - Static method in class edu.isi.pegasus.common.util.Currently
-
Ignores any internal date format, and tries to show a complete date/timp stamp in extended ISO 8601 format.
- isoldformat - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- isoldformat - Variable in class edu.isi.pegasus.planner.client.TCClient
- isPartitionOf(String, List) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
isPartitionOf
- isPartitionOf(String, List) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- ispfn - Variable in class edu.isi.pegasus.planner.client.TCClient
- isprofile - Variable in class edu.isi.pegasus.planner.client.TCClient
- isRegex(ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Checks if the 'regex' attribute is set to true for the given tuple
- isresource - Variable in class edu.isi.pegasus.planner.client.TCClient
- isSiteThirdParty(String, int) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Returns whether a Site is third party enabled or not.
- isSiteThirdParty(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Returns whether a Site is third party enabled or not.
- isSiteValid(String, String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Checks if a give site is valid for a given transformation.
- isStageableMapper() - Method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Returns whether this instance of mapper is an instance of a Stageable mapper or not.
- isSupportedFormat(String) - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Checks if it is a supported transformation catalog format
- issysinfo - Variable in class edu.isi.pegasus.planner.client.TCClient
- isTop() - Method in class edu.isi.pegasus.planner.provisioner.Node
-
Check whether this task is the entry task or not.
- isTransferringExecutableFile() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a boolean indicating if a file that is being staged is an executable or not (i.e is a data file).
- istype - Variable in class edu.isi.pegasus.planner.client.TCClient
- isValid() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Determines whether the transfer contained in this container is valid or not.
- isValid(Pattern, String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
- isValidArchitecture(String) - Static method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Checks if the architecture is a valid supported architecture
- isValidOS(String) - Static method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Checks if the operating system is a valid supported operating system
- isVersionValid(String) - Static method in class edu.isi.pegasus.planner.dax.Patterns
- isxml - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- isxml - Variable in class edu.isi.pegasus.planner.client.TCClient
- iterateJob() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Enumerates the internal values that constitute the content of the job list.
- iterateStatCall() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Enumerates the internal values that constitute the content of the stat list.
- iterator() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns an iterator that traverses through the graph using a graph traversal algorithm.
- iterator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns an iterator that traverses through the graph using a graph traversal algorithm.
- iterator() - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Creates a sorted iterator
- iterator() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns an iterator that traverses through the graph using a graph traversal algorithm.
- iterator() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns an iterator that traverses through the graph using a graph traversal algorithm.
- IterHEFT() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
- IVPTest - Class in edu.isi.pegasus.planner.parser
-
This class is used to test the
InvocationParser
class. - IVPTest() - Constructor for class edu.isi.pegasus.planner.parser.IVPTest
- IVSElement - Class in edu.isi.pegasus.planner.parser
-
This class keeps the name of an element and its corresponding java object reference.
- IVSElement(String, Invocation) - Constructor for class edu.isi.pegasus.planner.parser.IVSElement
J
- JAVA_COMMAND_LINE_PROPERTY_REGEX - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The regex used to match against a java property that is set using -Dpropertyname=value in the argument string
- JDBCRC - Class in edu.isi.pegasus.planner.catalog.replica.impl
-
This class implements a replica catalog on top of a simple table in a JDBC database.
- JDBCRC() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Default empty constructor creates an object that is not yet connected to any database.
- JDBCRC(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Convenience c'tor: Establishes the connection to the replica catalog database.
- Job - Class in edu.isi.pegasus.planner.classes
-
The object of this class holds the information to generate a submit file about one particular job making the Dag.
- Job - Class in edu.isi.pegasus.planner.dax
- Job - Class in edu.isi.pegasus.planner.invocation
-
This class is contains the record from each jobs that ran in every invocation.
- Job() - Constructor for class edu.isi.pegasus.planner.classes.Job
-
Intialises the member variables.
- Job(Job) - Constructor for class edu.isi.pegasus.planner.classes.Job
-
Overloaded constructor.
- Job(Job) - Constructor for class edu.isi.pegasus.planner.dax.Job
- Job(String) - Constructor for class edu.isi.pegasus.planner.invocation.Job
- Job(String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
- Job(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
- Job(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
- Job(String, String, String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Job
- JOB - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The constant string to write for job notifications.
- JOB_AGGREGATOR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that determines the clusterig executable to be used to run the merged/collapsed job.
- JOB_ARGUMENTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- JOB_ARGUMENTS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- JOB_CLASS_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The class ad for job Class.
- JOB_CLUSTER_SIZE_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The class ad to designate the size of the clustered jobs.
- JOB_CLUSTERED_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for whether a job is clustered or not
- JOB_EDGE_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The event name for job edge
- JOB_ENVIRONMENTVARIABLE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- JOB_ENVIRONMENTVARIABLE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- JOB_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The event name for a job
- JOB_EXECUTABLE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for the executable
- JOB_EXITCODE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- JOB_EXITTCODE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- JOB_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- JOB_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for job id
- JOB_INPUTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- JOB_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that indicates the path to the corresponding submit file for the job.
- JOB_MAX_RETRIES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for how many times a job is retried
- JOB_NUMBER - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- JOB_NUMBER - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- JOB_OUTPUTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.classes.DAGJob
-
The prefix to be attached for the DAX jobs
- JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.classes.DAXJob
-
The prefix to be attached for the DAX jobs
- JOB_RESOURCE_INFORMATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- JOB_RESOURCE_INFORMATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- JOB_RUN_TIME - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that if set in the Pegasus namespace specifies the approximate runtime of the job.
- JOB_RUNTIME_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The class ad for the expected job value
- JOB_SUBMIT_FILE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
Teh attribute key for the submit file
- JOB_TASK_COUNT_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for the number of tasks in the job
- JOB_TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
- JobAggregator - Interface in edu.isi.pegasus.planner.cluster
-
The interface that dictates how the jobs are clumped together into one single larger job.
- JobAggregatorFactory - Class in edu.isi.pegasus.planner.cluster.aggregator
-
A factory class to load the appropriate JobAggregator implementations while clustering jobs.
- JobAggregatorFactory() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
- JobAggregatorFactoryException - Exception in edu.isi.pegasus.planner.cluster.aggregator
-
Class to notify of failures while instantiating JobAggregator implementations.
- JobAggregatorFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException
-
Constructs a
JobAggregatorFactoryException
with no detail message. - JobAggregatorFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException
-
Constructs a
JobAggregatorFactoryException
with the specified detailed message. - JobAggregatorFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException
-
Constructs a
JobAggregatorFactoryException
with the specified detailed message and a cause. - JobAggregatorFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactoryException
-
Constructs a
JobAggregatorFactoryException
with the specified detailed message and a cause. - JobAggregatorInstanceFactory - Class in edu.isi.pegasus.planner.cluster.aggregator
-
A JobAggergator factory that caches up the loaded implementations.
- JobAggregatorInstanceFactory() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
The default constructor.
- jobClass - Variable in class edu.isi.pegasus.planner.classes.Job
-
The type of the job.
- jobComparator() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Singleton access to the job comparator.
- JobComparator() - Constructor for class edu.isi.pegasus.planner.cluster.Horizontal.JobComparator
- jobID - Variable in class edu.isi.pegasus.planner.classes.Job
-
Identifies of which Pegasus Super Node is a job associated with.
- jobIterator() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns an iterator for traversing through the jobs in the workflow.
- JobManager - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that is used to store information about a jobmanager and the information that it reports about a remote pool.
- JobManager() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Default constructor for the class.
- JOBMANAGER - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the list of
JobManager
objects for the remote site. - JOBMANAGER_RESOURCE - Static variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
The type identifying that the resource to authenticate against is a job manager.
- JOBMANAGER_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the jobmanager type.
- JOBMANAGER_TYPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies the jobmanager type.
- JOBMANAGERINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Array storing the names of the attributes that are stored with the jobmanager.
- jobName - Variable in class edu.isi.pegasus.planner.classes.Job
-
The name of the job.
- JOBS_IN_QUEUE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the number of the jobs in the queue attribute.
- JOBSTATE_JOB_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Shell
-
The prefix for events associated with job in jobstate.log file
- JOBSTATE_POST_SCRIPT_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Shell
-
The prefix for events associated with POST_SCRIPT in jobstate.log file
- JOBSTATE_PRE_SCRIPT_PREFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Shell
-
The prefix for events associated with job in jobstate.log file
- JobStatus - Class in edu.isi.pegasus.planner.invocation
-
This abstract class is the interface for all classes that describe the job exit, which describes more clearly failure, regular execution, signal and suspension.
- JobStatus() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatus
- JobStatusFailure - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- JobStatusFailure() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- JobStatusFailure(int) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Constructs an error number without reason text.
- JobStatusFailure(int, String) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Constructs a piece of data.
- JobStatusRegular - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- JobStatusRegular() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- JobStatusRegular(short) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Constructs an exit code.
- JobStatusSignal - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- JobStatusSignal() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- JobStatusSignal(short) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Constructs an error number without reason text.
- JobStatusSignal(short, boolean) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Constructs a piece of data.
- JobStatusSignal(short, boolean, String) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Constructs a piece of data.
- JobStatusSuspend - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- JobStatusSuspend() - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- JobStatusSuspend(short) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Constructs an error number without reason text.
- JobStatusSuspend(short, String) - Constructor for class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Constructs a piece of data.
- JOBTYPE - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
- jobType2GridGatewayJobType(int) - Static method in class edu.isi.pegasus.planner.classes.Job
-
Returns an appropriate grid gateway job type corresponding to a job type
- join(long) - Method in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
Calls the corresponding join method of the thread associated with this class.
- joinLFN(String, String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Joins the 3 components into a fully qualified logical mName of the format NS::NAME:VER
K
- KEEP_ALWAYS - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The state denoting always to keep the temporary files.
- KEEP_NEVER - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The state denoting never to keep the temporary files.
- KEEP_ONERROR - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The state denoting to keep the temporary files only in case of error.
- keySet() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns the key set associated with the namespace.
- Kickstart - Class in edu.isi.pegasus.planner.code.gridstart
-
This enables a constituentJob to be run on the grid, by launching it through kickstart.
- Kickstart() - Constructor for class edu.isi.pegasus.planner.code.gridstart.Kickstart
- KICKSTART_CLEANUP - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The environment variable used to the set Kickstart CLEANUP JOB.
- KICKSTART_INDEX - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The index in the constant arrays for NoGridStart.
- KICKSTART_INPUT_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The suffix for the kickstart input file, that is generated to use invoke at the remote end.
- KICKSTART_POSTJOB - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The environment variable used to the set Kickstart POSTJOB.
- KICKSTART_PREJOB - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The environment variable used to the set Kickstart PREJOB.
- KICKSTART_SETUP - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The environment variable used to the set Kickstart SETUP JOB.
L
- Label - Class in edu.isi.pegasus.planner.partitioner
-
This partitioner partitions the DAX into smaller partitions as specified by the labels associated with the jobs.
- Label(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.Label
-
The overloaded constructor.
- LABEL_BASED_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
The name of the class that does label based partitioning.
- LABEL_CALLBACK_CLASS - Static variable in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
The default callback for label partitioning.
- LABEL_CLUSTERING_TYPE - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The type corresponding to label based clustering.
- LABEL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key in vds namespace that does the labelling by default.
- LABEL_KEY - Static variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
The default key that is associated with label.
- LabelBag - Class in edu.isi.pegasus.planner.partitioner.graph
-
A bag implementation that just holds a particular value for the label key.
- LabelBag() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
The default constructor.
- labelBasedSubmitDirectoryForSubWorkflows() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether the submit directory for the sub workflows should include the label of the sub workflow or not.
- lastAddedNode() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the last added node to the partition.
- lb - Variable in class edu.isi.pegasus.planner.provisioner.Node
- leaf - edu.isi.pegasus.planner.classes.PlannerOptions.CLEANUP_OPTIONS
- level - Variable in class edu.isi.pegasus.planner.classes.Job
-
Identifies the level of the job in the dax.
- LEVEL_BASED_PARTITIONING_CLASS - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
The name of the class that does level based partitioning.
- LEVEL_KW - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- lfn - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- lfn - Variable in class edu.isi.pegasus.planner.client.TCClient
- LFN_DOES_NOT_EXIST_MSG - Static variable in class edu.isi.pegasus.planner.client.RCClient
-
The message for LFN's not found.
- LFNComparator() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery.LFNComparator
- lfnDoesNotExist(String) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Writes out a message about LFN not existing.
- lfnMap - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
Contains a unique ordered listing of the logical names referred to by the dag.
- LIGO_VO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The name of the LIGO VO
- LINK() - Constructor for enum edu.isi.pegasus.planner.dax.File.LINK
- LINKAGE() - Constructor for enum edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
- linux - edu.isi.pegasus.planner.dax.Executable.OS
- LINUX - edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
- LINUX - edu.isi.pegasus.planner.dax.Executable.OS
- LINUX - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Lists all logical filenames in the catalog.
- list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Lists all logical filenames in the catalog.
- list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Lists all logical filenames in the catalog.
- list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Lists all logical filenames in the catalog.
- list() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Lists all logical filenames in the catalog.
- list() - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Lists all logical filenames in the catalog.
- list() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns the list of sites, in the store.
- list() - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
- list() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Lists the site handles for all the sites in the Site Catalog.
- list() - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Lists the site handles for all the sites in the Site Catalog.
- list() - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog
-
Lists the site handles for all the sites in the Site Catalog.
- list(PrintStream) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Print out the property list onto the specified stream.
- list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Lists a subset of all logical filenames in the catalog.
- list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Lists a subset of all logical filenames in the catalog.
- list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Lists a subset of all logical filenames in the catalog.
- list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Lists a subset of all logical filenames in the catalog.
- list(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Lists a subset of all logical filenames in the catalog.
- list(String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Lists a subset of all logical filenames in the catalog.
- ListCallback() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback
-
Default Constructor.
- ListCommand - Class in edu.isi.pegasus.gridftp
-
Implements the ls command for remote GridFTP servers
- ListCommand(boolean, boolean) - Constructor for class edu.isi.pegasus.gridftp.ListCommand
- listIterateJob() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Enumerates the internal values that constitute the content of the job list.
- listIterateStatCall() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Enumerates the internal values that constitute the content of the stat list.
- ll(String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
List contents of path in long format
- load(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
Loads up the Site Catalog implementation with the sites whose site handles are specified.
- load(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Loads up the Site Catalog implementation with the sites whose site handles are specified.
- load(List<String>) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Loads up the Site Catalog implementation with the sites whose site handles are specified.
- load(List<String>) - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog
-
Loads up the Site Catalog implementation with the sites whose site handles are specified.
- Load - Class in edu.isi.pegasus.planner.invocation
-
The RAM element.
- Load() - Constructor for class edu.isi.pegasus.planner.invocation.Load
-
The default constructor
- loadCacheFiles(Set) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Ends up loading the cache files so as to enable the lookup for the transient files created by the parent jobs.
- loadCleanupImplementationInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory
-
Loads the implementing class corresponding to the mode specified by the user at runtime.
- loadCleanupStraegyInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.cleanup.CleanupFactory
-
Loads the implementing class corresponding to the mode specified by the user at runtime.
- loadClusterer(ADag, PegasusBag, String) - Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
Loads the appropriate clusterer on the basis of the clustering type specified in the options passed to the planner.
- loadConfigurationProperties(PegasusProperties) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Loads configuration specific properties into PegasusProperties
- loadConfigurationPropertiesAndOptions(PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Loads configuration specific properties into PegasusProperties, and adjusts planner options accordingly.
- loadCreateDirectoryImplementationInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.CreateDirectory
-
Loads the implementing class corresponding to the mode specified by the user at runtime.
- loadCreateDirectoryStraegyInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.CreateDirectory
-
Loads the implementing class corresponding to the mode specified by the user at runtime.
- loadDAXParser(PegasusBag, Callback, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Loads the appropriate DAXParser looking at the dax schema that is specified in the DAX file.
- loadDAXParser(PegasusBag, String, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Loads the appropriate DAXParser looking at the dax schema that is specified by the user.
- loadDAXParser(String, PegasusBag, Callback) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Loads the appropriate DAXParser looking at the dax schema that is specified by the user.
- loadDAXParserCallback(PegasusBag, String, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Loads the implementing class corresponding to the type specified by the user.
- loadDAXParserCallback(String, PegasusBag, String) - Static method in class edu.isi.pegasus.planner.parser.DAXParserFactory
-
Loads the implementing class corresponding to the type specified by the user.
- loadDeployWorkerPackage(PegasusBag) - Static method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Loads the implementing class corresponding to the mode specified by the user at runtime.
- loadEnvironmentVariables() - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Initializes the internal hash that collects environment variables.
- loadGridStart(Job, String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Loads the appropriate gridstart implementation for a job on the basis of the value of the GRIDSTART_KEY in the Pegasus namepsace.
- loadGridStart(PegasusBag, ADag, String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Loads the implementing class corresponding to the class.
- loadImplementations(PegasusBag) - Method in class edu.isi.pegasus.planner.transfer.MultipleFTPerXFERJobRefiner
-
Loads the appropriate implementations that is required by this refinement strategy for different types of transfer jobs.
- loadImplementations(PegasusBag) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Loads the appropriate implementations that is required by this refinement strategy for different types of transfer jobs.
- loadImplementations(PegasusBag) - Method in class edu.isi.pegasus.planner.transfer.SingleFTPerXFERJobRefiner
-
Loads the appropriate implementations that is required by this refinement strategy for different types of transfer jobs.
- loadInheritedReplicaStore(Set) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Ends up loading the inherited replica files.
- loadInstance() - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory
-
Connects the interface with the replica catalog implementation.
- loadInstance() - Static method in class edu.isi.pegasus.planner.catalog.site.SiteFactory
-
Connects the interface with the transformation catalog implementation.
- loadInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
The overloaded method which is to be used internally in Pegasus.
- loadInstance() - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
Connects the interface with the transformation catalog implementation.
- loadInstance() - Static method in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
-
A no hassle factory method that loads the replica selector specified in the properties.
- loadInstance(CredentialHandler.TYPE) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
This method loads the appropriate implementing CondorStyle as specified by the user at runtime.
- loadInstance(CommonProperties) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory
-
Connects the interface with the replica catalog implementation.
- loadInstance(CommonProperties) - Static method in class edu.isi.pegasus.planner.catalog.work.WorkFactory
-
Connects the interface with the work catalog implementation.
- loadInstance(ADag, PegasusBag) - Static method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
-
Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
- loadInstance(ADag, PegasusBag) - Static method in class edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactory
-
Loads the implementing class corresponding to the value specified in the properties.
- loadInstance(ADag, PegasusBag) - Static method in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory
-
Loads the implementing class corresponding to the value specified in the properties.
- loadInstance(Job) - Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
Returns the appropriate handle to the JobAggregator that is to be used for a particular type of job.
- loadInstance(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
This method loads the appropriate implementing CondorStyle as specified by the user at runtime.
- loadInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
Connects the interface with the transformation catalog implementation.
- loadInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
This method loads the appropriate implementing code generator as specified by the user at runtime.
- loadInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory
-
Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
- loadInstance(PegasusBag) - Static method in class edu.isi.pegasus.planner.transfer.sls.SLSFactory
-
This method loads the appropriate implementing code generator as specified by the user at runtime.
- loadInstance(PegasusBag, int) - Static method in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
Loads the implementing class corresponding to the type specified by the user.
- loadInstance(PegasusBag, String) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
This method loads the appropriate CredentialHandler using reflection.
- loadInstance(PegasusBag, String) - Static method in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
This method loads the appropriate code generator as specified by the user at runtime.
- loadInstance(PegasusBag, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
This method loads the appropriate Condor Style using reflection.
- loadInstance(PegasusBag, String) - Static method in class edu.isi.pegasus.planner.transfer.sls.SLSFactory
-
This method loads the appropriate code generator as specified by the user at runtime.
- loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.common.logging.LogFormatterFactory
-
Loads the appropriate LogFormatter class as specified by properties.
- loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.common.logging.LogManagerFactory
-
Loads the appropriate LogManager class as specified by properties.
- loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory
-
Connects the interface with the replica catalog implementation.
- loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.catalog.site.SiteFactory
-
Connects the interface with the site catalog implementation.
- loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
Connects the interface with the transformation catalog implementation.
- loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.catalog.work.WorkFactory
-
Connects the interface with the work catalog implementation.
- loadInstance(PegasusProperties) - Static method in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
-
Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
- loadInstance(PegasusProperties, boolean) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
Connects the interface with the site catalog implementation.
- loadInstance(PegasusProperties, LogManager) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
-
Connects the interface with the transformation catalog implementation.
- loadInstance(PegasusProperties, PlannerOptions, String) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory
-
Loads the implementing class corresponding to the type specified by the user.
- loadInstance(PegasusProperties, PlannerOptions, String, String) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory
-
Loads the implementing class corresponding to the type specified by the user.
- loadInstance(PegasusProperties, GraphNode, Map, String) - Static method in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
Loads the implementing class corresponding to the type specified by the user.
- loadInstance(PegasusProperties, String) - Static method in class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
-
Loads the implementing class corresponding to the class.
- loadInstance(PegasusProperties, String, String) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The ends up loading the PDAXWriter.
- loadInstance(String) - Static method in class edu.isi.pegasus.common.logging.LogFormatterFactory
-
Loads the Log Formatter specified.
- loadInstance(String, ADag, PegasusBag) - Static method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
-
Loads the implementing class corresponding to the class passed.
- loadInstance(String, PegasusBag) - Static method in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
Loads the implementing class corresponding to the class.
- loadInstance(String, PegasusBag, ADag) - Static method in class edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactory
-
Loads the implementing class corresponding to the class.
- loadInstance(String, PegasusBag, ADag) - Static method in class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory
-
Loads the implementing class corresponding to the class.
- loadInstance(String, PegasusProperties, String, String) - Static method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
Loads the implementing PDAXWriter.
- loadInstance(String, Object[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
Loads the appropriate TC implementing Class with the given arguments.
- loadInstance(String, String, Properties) - Static method in class edu.isi.pegasus.common.logging.LogManagerFactory
-
Loads the Log Formatter specified.
- loadInstance(String, Properties) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory
-
Connects the interface with the replica catalog implementation.
- loadInstance(String, Properties) - Static method in class edu.isi.pegasus.planner.catalog.site.SiteFactory
-
Connects the interface with the site catalog implementation.
- loadInstance(String, Properties) - Static method in class edu.isi.pegasus.planner.catalog.work.WorkFactory
-
Connects the interface with the work catalog implementation.
- loadLocalEnvVariables() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool
-
Reads in the environment variables into memory from the properties file and the pool catalog.
- loadNonSingletonObjects(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It loads the objects using their non singleton implementations.
- loadPartitioner(PegasusProperties, String, GraphNode, Map) - Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
Loads the appropriate partitioner on the basis of the clustering type specified in the options passed to the planner.
- loadPoolInstance(String, int, Object[]) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Loads the appropriate class that implements a particular pool mode using the reflection package in java at runtime.
- loadPoolInstance(String, String, int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Loads the pool info provider class using the reflection package in java at runtime.
- loadPoolInstance(String, String, String, int) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Loads the pool info provider class using the reflection package in java at runtime.
- loadPOSTScript(Job, GridStart) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Loads the appropriate POST Script implementation for a job on the basis of the value of the Pegasus profile GRIDSTART_KEY, and the DAGMan profile POST_SCRIPT_KEY in the Pegasus namepsace.
- loadPOSTScript(PegasusProperties, String, String, String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Loads the implementing class corresponding to the class.
- loadPPS(PegasusProperties) - Static method in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
-
Loads the appropriate PPS implementation on the basis of the property set in the properties.
- loadProperties() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Loads all the properties that are needed by this class.
- loadProperties() - Method in class edu.isi.pegasus.planner.client.Executable
-
Loads all the properties that would be needed by the Toolkit classes.
- loadProperties() - Method in class edu.isi.pegasus.planner.client.PartitionDAX
-
Loads all the properties that are needed by this class.
- loadProperties() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
An empty implementation.
- loadProperties() - Method in class edu.isi.pegasus.planner.client.RankDAX
-
Loads all the properties that would be needed by the Toolkit classes.
- loadProperties() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Loads all the properties that would be needed by the Toolkit classes
- loadProperties() - Method in class edu.isi.pegasus.planner.client.TCClient
- loadProperties() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Loads all the properties that would be needed by the Toolkit classes
- loadProperties() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Loads all the properties that would be needed by the Toolkit classes.
- loadProperties() - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Loads all the properties that are needed by the Engine classes.
- loadSingletonInstance() - Static method in class edu.isi.pegasus.common.logging.LogManagerFactory
-
Loads the appropriate LogManager class as specified by properties.
- loadSingletonInstance(PegasusProperties) - Static method in class edu.isi.pegasus.common.logging.LogManagerFactory
-
Loads the appropriate LogManager class as specified by properties.
- loadSingletonInstance(String) - Static method in class edu.isi.pegasus.common.logging.LogFormatterFactory
-
Loads the appropriate LogFormatter class as specified by properties.
- loadSingletonObjects() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
It loads the objects that the pool providers need in a singleton manner, wherever possible.
- loadSite(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
Whether to laod a site or not in the
SiteStore
- loadSite(SiteCatalogEntry3) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
Whether to laod a site or not in the
SiteStore
- loadSiteCatalogParser(String, PegasusBag, List<String>) - Static method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
-
Loads the appropriate Site Catalog Parser looking at the dax schema that is specified by the user.
- loadSiteCatalogXMLParser(PegasusBag, String, List<String>) - Static method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
-
Loads the appropriate DAXParser looking at the dax schema that is specified by the user.
- loadSiteStore(Collection<String>, PegasusBag) - Static method in class edu.isi.pegasus.planner.catalog.site.SiteFactory
- loadSiteStore(Set<String>) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Loads the sites from the site catalog into the site store
- loadTCMapper(String, PegasusBag) - Static method in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
- loadTXSelector(String) - Static method in class edu.isi.pegasus.planner.selector.TransformationSelector
-
Loads the implementing class corresponding to the mode specified by the user at runtime in the properties file.
- loadXMLProducer(PegasusProperties) - Static method in class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory
-
Loads the appropriate XMLProducer on the basis of the property set in the properties.
- Local - Class in edu.isi.pegasus.planner.selector.replica
-
This replica selector only prefers replicas from the local host and that start with a file: URL scheme.
- Local(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.selector.replica.Local
-
The overloaded constructor, that is called by load method.
- LOCAL_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
-
The prefix for all local transfer jobs.
- local_scratch - edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
- LOCAL_SITE_HANDLE - Static variable in interface edu.isi.pegasus.planner.selector.ReplicaSelector
-
The local site handle.
- local_storage - edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
- LOCAL_UNIVERSE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
- LOCAL_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for local universe.
- LocalDirectory - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class represents a local directory on a site.
- LocalDirectory() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.LocalDirectory
-
The default constructor.
- LocalDirectory(Map<FileServerType.OPERATION, List<FileServer>>, InternalMountPoint) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.LocalDirectory
-
The overloaded constructor
- lockTaskMetrics(boolean) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Sets the lock task metrics parameters.
- log(int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Log the message represented by the internal log buffer.
- log(String, int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Logs the message on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
- log(String, int) - Method in class edu.isi.pegasus.planner.client.Executable
-
Logs messages to the singleton logger.
- log(String, int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Logs the message on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
- log(String, Exception, int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Logs the exception on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
- log(String, Exception, int) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Logs the exception on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
- log(String, Exception, int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Logs the exception on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
- log(String, String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Small helper method to bundle repetitive parameters in a template for reporting progress.
- log(String, String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
- log(Level, String) - Static method in class edu.isi.pegasus.planner.client.RCClient
-
Logs messages from main() method.
- log(Level, String) - Method in class edu.isi.pegasus.planner.invocation.SimpleServerThread
- Log4j - Class in edu.isi.pegasus.common.logging.logger
-
A Log4j implementation of the LogManager interface.
- Log4j() - Constructor for class edu.isi.pegasus.common.logging.logger.Log4j
-
The constructor.
- LOG4J_CONF_PROPERTY - Static variable in class edu.isi.pegasus.common.logging.logger.Log4j
-
The property that specifies the path to the log4j properties file.
- LOG4J_CONF_PROPERTY - Static variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The LOG4j system configuration property.
- LOG4J_LOGGER - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The Log4j logger.
- Log4jFilter() - Constructor for class edu.isi.ikcap.workflows.util.logging.EventLogMessage.Log4jFilter
- logAlreadyFormattedMessage(String, int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Logs the message on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
- logAlreadyFormattedMessage(String, int) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Logs the message on the appropriate queue if the level of the message is less than or equal to the level set for the Logger.
- logAlreadyFormattedMessage(String, int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
A stop gap function .
- logAndReset(int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Creates a log message with the contents of the internal log buffer.
- logConfigMessages() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Logs configuration messages regarding the type of implementations loaded for various type of transfer node creations.
- logDeprecatedWarning(String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Logs a warning about the deprecated property.
- logEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Log a message that connects the parent entities with the children.
- logEntityHierarchyMessage(String, String, String, Collection<String>) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Log a message that connects the parent entities with the children.
- logEntityHierarchyMessage(String, String, String, Collection<String>, int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Log a message that connects the parent entities with the children.
- LogEvent - Class in edu.isi.ikcap.workflows.util.logging
- LogEvent(String, String) - Constructor for class edu.isi.ikcap.workflows.util.logging.LogEvent
- LogEvent(String, String, String, String) - Constructor for class edu.isi.ikcap.workflows.util.logging.LogEvent
- LogEvent(String, String, Map<String, String>) - Constructor for class edu.isi.ikcap.workflows.util.logging.LogEvent
- logEventCompletion() - Method in class edu.isi.pegasus.common.logging.LogManager
-
Logs the completion message on the basis of the debug level.
- logEventCompletion(int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Logs the completion message on the basis of the debug level.
- logEventCompletion(int) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Logs the completion message on the basis of the debug level.
- logEventCompletion(int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Logs the completion message on the basis of the debug level.
- logEventStart(String, String, String) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Log an event start message to INFO level
- logEventStart(String, String, String, int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Log an event start message.
- logEventStart(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Log an event start message to the INFO Level
- logEventStart(String, Map<String, String>, int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Log an event start message.
- logFile(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Returns the name of the log file to used on the remote site, for the seqexec job.
- LogFormatter - Interface in edu.isi.pegasus.common.logging
-
The interface that defines how the messages need to be formatted for logging
- LogFormatterFactory - Class in edu.isi.pegasus.common.logging
-
A factory class to load the appropriate implementation of LogFormatter as specified by properties.
- LogFormatterFactory() - Constructor for class edu.isi.pegasus.common.logging.LogFormatterFactory
- LogFormatterFactoryException - Exception in edu.isi.pegasus.common.logging
-
Class to notify of failures while instantiating Log Formatter implementations.
- LogFormatterFactoryException(String) - Constructor for exception edu.isi.pegasus.common.logging.LogFormatterFactoryException
-
Constructs a
LogFormatterFactoryException
with no detail message. - LogFormatterFactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.logging.LogFormatterFactoryException
-
Constructs a
LogFormatterFactoryException
with the specified detailed message. - LogFormatterFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.logging.LogFormatterFactoryException
-
Constructs a
LogFormatterFactoryException
with the specified detailed message and a cause. - LogFormatterFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.logging.LogFormatterFactoryException
-
Constructs a
LogFormatterFactoryException
with the specified detailed message and a cause. - logger - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
Ensures only one object is created always.
- logger - Variable in class edu.isi.pegasus.gridftp.Command
- logger - Variable in class edu.isi.pegasus.gridftp.GridFTPConnection
- logger - Variable in class edu.isi.pegasus.gridftp.ListCommand
- logger - Variable in class edu.isi.pegasus.gridftp.MakeDirectoryCommand
- logger - Static variable in class edu.isi.pegasus.gridftp.PegasusGridFTP
- logger - Variable in class edu.isi.pegasus.gridftp.RemoveCommand
- LoggingKeys - Class in edu.isi.pegasus.common.logging
-
Some predifined logging keys to be used for logging.
- LoggingKeys - Interface in edu.isi.ikcap.workflows.util.logging
-
Defines keys for creating logs within the workflow system
- LoggingKeys() - Constructor for class edu.isi.pegasus.common.logging.LoggingKeys
- logicalId - Variable in class edu.isi.pegasus.planner.classes.Job
-
The logical id of the job as referred to in the dax.
- logicalName - Variable in class edu.isi.pegasus.planner.classes.Job
-
The logical name of the transformation which is executed as a part of this job.
- logJobAggregatorProgress() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns whether the seqexec job aggregator should log progress to a log or not.
- logJobAggregatorProgressToGlobal() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns whether the seqexec job aggregator should write to a global log or not.
- LogManager - Class in edu.isi.pegasus.common.logging
-
The logging class that to log messages at different levels.
- LogManager() - Constructor for class edu.isi.pegasus.common.logging.LogManager
-
The constructor.
- LogManagerFactory - Class in edu.isi.pegasus.common.logging
-
A factory class to load the appropriate implementation of Logger API as specified by properties.
- LogManagerFactory() - Constructor for class edu.isi.pegasus.common.logging.LogManagerFactory
- LogManagerFactoryException - Exception in edu.isi.pegasus.common.logging
-
Class to notify of failures while instantiating Log Factory implementations.
- LogManagerFactoryException(String) - Constructor for exception edu.isi.pegasus.common.logging.LogManagerFactoryException
-
Constructs a
LogManagerFactoryException
with no detail message. - LogManagerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.common.logging.LogManagerFactoryException
-
Constructs a
LogManagerFactoryException
with the specified detailed message. - LogManagerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.common.logging.LogManagerFactoryException
-
Constructs a
LogManagerFactoryException
with the specified detailed message and a cause. - LogManagerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.common.logging.LogManagerFactoryException
-
Constructs a
LogManagerFactoryException
with the specified detailed message and a cause. - logMemoryUsage() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Logs memory usage of the JVM
- logMemoryUsage() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to log JVM memory usage or not.
- logMessage(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Logs the message to a logging stream.
- logMessage(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Logs the message to a logging stream.
- logMessage(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Logs the message to a logging stream.
- logMetrics(PlannerMetrics) - Method in class edu.isi.pegasus.planner.code.generator.Metrics
-
Logs the metrics to the metrics server and to the submit directory
- logRefinerAction(AggregatedJob, JobAggregator) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Records the refiner action into the Provenace Store as a XML fragment.
- logRefinerAction(Job) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Logs the action taken by the refiner on a job as a XML fragment in the XML Producer.
- logRefinerAction(Job, Job, Collection, String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Records the refiner action into the Provenace Store as a XML fragment.
- logRemoval(Job, PegasusFile, String, boolean) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Helped method for logging removal message.
- logSuccessfulCompletion(boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Logs the successful completion message.
- longFormat - Variable in class edu.isi.pegasus.gridftp.FileInfo
- longFormat - Variable in class edu.isi.pegasus.gridftp.ListCommand
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Retrieves all entries for a given LFN from the replica catalog.
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Retrieves all entries for a given LFN from the replica catalog.
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Retrieves all entries for a given LFN from the replica catalog.
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Retrieves all entries for a given LFN from the replica catalog.
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Retrieves all entries for a given LFN from the replica catalog.
- lookup(String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Retrieves all entries for a given LFN from the replica catalog.
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Returns SiteCatalogEntry matching a site handle.
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
- lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Retrieves the
SiteCatalogEntry
for a site. - lookup(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Retrieves the
SiteCatalogEntry
for a site. - lookup(String) - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog
-
Retrieves the
SiteCatalogEntry
for a site. - lookup(String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.classes.PlannerCache
-
Retrieves all entries for a given LFN from the replica catalog.
- lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Retrieves the entry for a given directory and site handle from the replica catalog.
- lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Retrieves the entry for a given filename and site handle from the replica catalog.
- lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Retrieves the entry for a given filename and resource handle from the replica catalog.
- lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Retrieves the entry for a given filename and site handle from the replica catalog.
- lookup(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Retrieves the entry for a given filename and site handle from the replica catalog.
- lookup(String, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Retrieves the entry for a given filename and resource handle from the replica catalog.
- lookup(String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.classes.PlannerCache
-
Retrieves the entry for a given filename and resource handle from the replica catalog.
- lookup(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns TC entries for a particular logical transformation and/or on a particular resource and/or of a particular type.
- lookup(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Returns TC entries for a particular logical transformation and/or on a particular resource and/or of a particular type.
- lookup(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Returns TC entries for a particular logical transformation and/or on a particular resource and/or of a particular type.
- lookup(String, String, String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Returns TC entries for a particular logical transformation and/or on a particular resource and/or of a particular type.
- lookup(String, String, String, List, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Returns TC entries for a particular logical transformation and/or on a number of resources and/or of a particular type.
- lookup(String, String, String, List, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Returns TC entries for a particular logical transformation and/or on a number of resources and/or of a particular type.
- lookup(String, String, String, List, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Returns TC entries for a particular logical transformation and/or on a number of resources and/or of a particular type.
- lookup(String, String, String, List, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Returns TC entries for a particular logical transformation and/or on a number of resources and/or of a particular type.
- lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Retrieves multiple entries for a given logical directory, up to the complete catalog.
- lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Map) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Retrieves multiple entries for a given logical directory, up to the complete catalog.
- lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Retrieves multiple entries for a given logical directory, up to the complete catalog.
- lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookup(Set, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupConfProperty(String[], char) - Method in class edu.isi.pegasus.planner.client.Executable
-
Looks up for the conf property in the arguments passed to the executable
- lookupConfProperty(String[], char) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Looks up for the conf property in the command line arguments passed to the RCClient
- lookupLFNProfiles(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Get the list of Profiles associated with a particular logical transformation.
- lookupLFNProfiles(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Get the list of Profiles associated with a particular logical transformation.
- lookupLFNProfiles(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Get the list of Profiles associated with a particular logical transformation.
- lookupLFNProfiles(String, String, String) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Get the list of Profiles associated with a particular logical transformation.
- lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Retrieves all entries for a given LFN from the replica catalog.
- lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Retrieves all entries for a given LFN from the replica catalog.
- lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Retrieves all entries for a given LFN from the replica catalog.
- lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Retrieves all entries for a given LFN from the replica catalog.
- lookupNoAttributes(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Retrieves all entries for a given LFN from the replica catalog.
- lookupNoAttributes(String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Retrieves all entries for a given LFN from the replica catalog.
- lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Retrieves multiple entries for a given logical directory, up to the complete catalog.
- lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Retrieves multiple entries for a given logical directory, up to the complete catalog.
- lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoAttributes(Set, String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Retrieves multiple entries for a given logical filename, up to the complete catalog.
- lookupNoProfiles(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Get the list of PhysicalNames for a particular transformation on a site/sites for a particular type/types;
- lookupNoProfiles(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Get the list of PhysicalNames for a particular transformation on a site/sites for a particular type/types;
- lookupNoProfiles(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Get the list of PhysicalNames for a particular transformation on a site/sites for a particular type/types;
- lookupNoProfiles(String, String, String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Get the list of PhysicalNames for a particular transformation on a site/sites for a particular type/types;
- lookupPFNProfiles(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Get the list of Profiles associated with a particular physical transformation.
- lookupPFNProfiles(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Get the list of Profiles associated with a particular physical transformation.
- lookupPFNProfiles(String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Get the list of Profiles associated with a particular physical transformation.
- lookupPFNProfiles(String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Get the list of Profiles associated with a particular physical transformation.
- lookupSites(String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Get the list of Resource ID's where a particular transformation may reside.
- lookupSites(String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Get the list of Resource ID's where a particular transformation may reside.
- lookupSites(String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Get the list of Resource ID's where a particular transformation may reside.
- lookupSites(String, String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Get the list of Resource ID's where a particular transformation may reside.
- lookupStorageDirectory(String) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Looks up the site catalog to return the storage directory for a site
- lookupWithHandle(String, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
- LOWEST_RANK_VALUE - Static variable in class edu.isi.pegasus.planner.selector.replica.Regex
-
The lowest rank value
- LRC - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that is used to store information about a local replica catalog, that is associated with a site in the pool configuration catalog.
- LRC - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the list of
LRC
objects for the remote site. - LRC - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "lrc".
- LRC(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Constructor for the class.
- ls(String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
List contents of path in short (filename only) format
- ls(String, boolean) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
List contents of path.
- lsf - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- LSF - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
M
- m_application - Variable in class edu.isi.pegasus.planner.client.VersionNumber
-
application's own name.
- m_archmode - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Describes the architecture runtime mode.
- m_arguments - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Command-line arguments.
- m_argv - Variable in class edu.isi.pegasus.planner.invocation.ArgVector
-
This is the (new) alternative explicit argument vector.
- m_atime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Contains the last access time timestamp.
- m_attributeMap - Variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Any optional attributes associated with the PFN.
- m_autoinc - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Remembers if obtaining generated keys will work or not.
- m_autoinc - Variable in class edu.isi.pegasus.planner.catalog.work.Database
-
Remembers if obtaining generated keys will work or not.
- m_avg_line_size - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
No.
- m_batch - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Indication of batch mode.
- m_binDir - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
The bin dir of the Pegasus install
- m_blksize - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Stores the blocksize of the file.
- m_blocks - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Stores the number of blocks of the file.
- m_buffer_size - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
No.
- m_chunk_factor - Variable in class edu.isi.pegasus.planner.client.RCClient
-
The number of lines that are to be parsed for chunking up large input files.
- m_classname - Variable in class edu.isi.pegasus.common.util.DynamicLoader
-
Stores the fully qualified class name to dynamically instantiate.
- m_coarse - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Parsing for ISO dates without milliseconds
- m_conf_property_file - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Reference to the property file passed using the --conf option
- m_core - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
This flag signals, if a core file was generated.
- m_count - Variable in class edu.isi.pegasus.planner.invocation.Fifo
-
optional message count for the FIFO.
- m_ctime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Contains the creation time timestamp.
- m_cwd - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Working directory at startup.
- m_data - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
Optional data gleaned from stdout or stderr.
- m_dbschema - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
- m_depth - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Count the depths of elements in the document
- m_derivation - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Name of the Derivation that produced this invocation.
- m_descriptor - Variable in class edu.isi.pegasus.planner.invocation.Descriptor
-
Descriptor of the file.
- m_descriptor - Variable in class edu.isi.pegasus.planner.invocation.Temporary
-
Descriptor of the file.
- m_domainname - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Contains the optional domain name on the network.
- m_duration - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
total duration of call.
- m_duration - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Duration of the job.
- m_emptyFail - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
- m_environment - Variable in class edu.isi.pegasus.planner.invocation.Environment
-
Mappings of keys to values
- m_environment - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Environment settings.
- m_errno - Variable in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
This is the errno value with the reason that the invocation of the application failed.
- m_errno - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
value of errno after calling any stat function, or -1 for failure.
- m_errors - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Counts the number of errors.
- m_escapable - Variable in class edu.isi.ikcap.workflows.util.logging.Escape
-
Defines the set of characters that require escaping.
- m_escapable - Variable in class edu.isi.pegasus.common.util.Escape
-
Defines the set of characters that require escaping.
- m_escape - Variable in class edu.isi.ikcap.workflows.util.logging.Escape
-
Defines the character used to escape characters.
- m_escape - Variable in class edu.isi.pegasus.common.util.Escape
-
Defines the character used to escape characters.
- m_executable - Variable in class edu.isi.pegasus.planner.invocation.Arguments
-
This is the executable that was run.
- m_executable - Variable in class edu.isi.pegasus.planner.invocation.CommandLine
-
This is the executable that was run.
- m_executable - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Stat call of the executable.
- m_exitcode - Variable in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
This is exit code returned by the application.
- m_fatals - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Counts the number of fatal errors.
- m_file - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
the object (fn,fd) that the stat call was taken on.
- m_filename - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Records the name of the on-disk representation.
- m_filename - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Records the name of the on-disk representation.
- m_filename - Variable in class edu.isi.pegasus.planner.invocation.Regular
-
Name of the file.
- m_filename - Variable in class edu.isi.pegasus.planner.invocation.Temporary
-
Name of the file.
- m_fine - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Parsing for ISO dates with millisecond extension.
- m_formatter - Variable in class edu.isi.pegasus.common.util.Currently
-
This is used to format the time stamp.
- m_forward - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
A Hashmap to forward resolve namespaces that were encountered during parsing.
- m_gid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
numerical group id of the effective user.
- m_gid - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
group id of the owner of the file.
- m_group - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
symbolical group name of the effective user.
- m_group - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
symbolical group name of the effective user.
- m_handle - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
optional handle for stat calls of the invocation record
- m_hexbyte - Variable in class edu.isi.pegasus.planner.invocation.File
-
optional first 16 byte of file, or less if shorter.
- m_hostaddr - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
host address where gridlaunch ran (primary interface).
- m_hostname - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Symbolic hostname where gridlaunch ran (primary interface).
- m_identifiers - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- m_idrss - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
integral unshared data size, or private integral resident set size.
- m_in - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Stores the stream from which we are currently scanning.
- m_inblock - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
block input operations.
- m_info - Variable in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
The List of
MachineInfo
elements associated with the machine. - m_inode - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
We store the inode number, which let's us reference a file uniquely per filesystem.
- m_instance - Static variable in class edu.isi.pegasus.common.util.CommonProperties
-
implements the singleton access via class variable.
- m_interface - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Symbolic name of primary interface we used to determine host-name and -address.
- m_isrss - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
integral stoack size.
- m_ixrss - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
integral shared memory size.
- m_job - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Job records: prejob, main job, postjob
- m_jobStatus - Variable in class edu.isi.pegasus.planner.invocation.Status
-
This member variable contains the real status of the job.
- m_key - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- m_key - Variable in class edu.isi.pegasus.planner.invocation.EnvEntry
-
environment handle
- m_key - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- m_lfn - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Maintains a memory slurp of the file representation.
- m_lfn - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Maintains a memory slurp of the file representation.
- m_lfn - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
optional logical filename associated with this stat call
- m_lfn_pattern - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
- m_lfn_regex - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
- m_line_count - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
No.
- m_lineno - Variable in exception edu.isi.pegasus.planner.parser.ScannerException
- m_location - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Keep the location within the document.
- m_location - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Keep the location within the document
- m_log - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Our own logger.
- m_log - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Obtain our logger once for multiple uses.
- m_logger - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
The handle to the logger used to log messages.
- m_lookAhead - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Stores the look-ahead symbol.
- m_lookAhead - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Captures the look-ahead character.
- m_machine - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Contains the machine's hardware description.
- m_machine - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
The Machine object capturing machine information.
- m_majflt - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
major page faults - incurred subsystem IO, sometimes includes swap.
- m_maxrss - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
maximum resident set size.
- m_minflt - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
minor page faults - sometimes also recovered pages.
- m_mode - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Is the number for the file mode.
- m_msgrcv - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
messages received.
- m_msgsnd - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
messages sent.
- m_mtime - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Contains the last modification time timestamp;
- m_name - Variable in class edu.isi.pegasus.planner.parser.IVSElement
- m_namespace - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- m_namespace - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- m_next_exception - Variable in exception edu.isi.pegasus.planner.catalog.CatalogException
-
chains the next exception into line.
- m_nivcsw - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
involuntary conext switches.
- m_nlink - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Stores the number of hard links to the file.
- m_noDBase - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
- m_nodename - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Describes the machine's network node hostname.
- m_nsignals - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
number of signals sent to process.
- m_nswap - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
number of swap operations - unused in Linux unless kernel patched.
- m_nvcsw - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
voluntary context switches.
- m_obj - Variable in class edu.isi.pegasus.planner.parser.IVSElement
- m_out - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
A buffered writer, to buffer all file writes being performed.
- m_outblock - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
block output operations.
- m_pagesize - Variable in class edu.isi.pegasus.planner.invocation.Machine
-
The only attribute to the machine element is required.
- m_parser - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
- m_parser - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Holds the instance of a
XMLReader
class. - m_pconfig - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- m_pconfig - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- m_pegasus_props - Variable in class edu.isi.pegasus.planner.client.RCClient
-
The object holding all the properties pertaining to Pegasus.
- m_pfn - Variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
The physical filename.
- m_pid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
process id of gridlaunch itself.
- m_pid - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Process id assigned to the job.
- m_pmem - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Records the physical memory on the remote machine, if available.
- m_pool_info - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- m_pool_info - Variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- m_position - Variable in exception edu.isi.pegasus.common.util.ProfileParserException
-
Remembers the position that cause the exception to be thrown.
- m_position - Variable in class edu.isi.pegasus.planner.invocation.ArgEntry
-
argument vector position
- m_prefs - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Maintains instance-local settings on user preferences.
- m_props - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
internal set of properties.
- m_quote - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Records the quoting mode for LFNs and PFNs.
- m_quote - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Records the quoting mode for LFNs and PFNs.
- m_rc - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Maintains the interface to the replica catalog implementation.
- m_reader - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Holds the instance of a
XMLReader
class. - m_readonly - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
A boolean indicating whether the catalog is read only or not.
- m_readonly - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
A boolean indicating whether the catalog is read only or not.
- m_release - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Contains the operating system's version string.
- m_remote - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
- m_resource - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Resource, site or pool at which the jobs was run.
- m_result - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Holds the result, will be overwritten by each invocation of parse().
- m_reverse - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
A Hashmap to reverse resolve namespaces that were encountered during parsing.
- m_rls_logger - Variable in class edu.isi.pegasus.planner.client.RCClient
-
Logger for RLS implementation for the time being.
- m_root - Static variable in class edu.isi.pegasus.planner.client.RCClient
-
Keeps track of log4j's root logger as singleton.
- m_rsize - Variable in class edu.isi.pegasus.planner.invocation.Fifo
-
optional number of bytes read from FIFO.
- m_scanner - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
The access to the lexical scanner is stored here.
- m_schemaDir - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
Location of our schemas
- m_schemafile - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
what is the name of the schema file in the filename hint?
- m_server - Variable in class edu.isi.pegasus.planner.invocation.SimpleServer
- m_server - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
- m_sharedStateDir - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
GNU: modifiable architecture-independent data in DIR [PREFIX/share/pegasus].
- m_signo - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
This is the signal number that led to the process termination.
- m_signo - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
This is the signal number that led to the suspension.
- m_size - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
Denotes the size of the file.
- m_socket - Variable in class edu.isi.pegasus.planner.invocation.SimpleServerThread
- m_specific - Variable in class edu.isi.pegasus.planner.invocation.Machine
-
This is a grouping element for the remaining machine-specific items.
- m_stack - Variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
A stack of namespaces?
- m_stamp - Variable in class edu.isi.pegasus.planner.invocation.Machine
-
The time when the snapshot was taken.
- m_start - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
start of gridlaunch timestamp.
- m_start - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Start time of this job.
- m_stat - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Array with stat() and fstat() information about various files.
- m_statinfo - Variable in class edu.isi.pegasus.planner.invocation.StatCall
-
the stat information itself, only present for unfailed calls.
- m_status - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Exit condition of the job.
- m_status - Variable in class edu.isi.pegasus.planner.invocation.Status
-
The raw exit code, unparsed and unprepared.
- m_stime - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
system time - time spent in system mode, seconds with fraction.
- m_symbolTable - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
Singleton implementation of a symbol table for reserved words.
- m_sysConfDir - Variable in class edu.isi.pegasus.common.util.CommonProperties
-
GNU: read-only single-machine data in DIR [PREFIX/etc].
- m_sysname - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
Describes the operating system name.
- m_tag - Variable in class edu.isi.pegasus.planner.invocation.Job
-
This is the tag to produce the job for.
- m_tag - Variable in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
This is the tag to group the machine-specific information.
- m_total_lines_succ_worked - Variable in class edu.isi.pegasus.planner.client.RCClient
-
The total number of lines on which the client has successfully worked on till yet.
- m_total_lines_worked - Variable in class edu.isi.pegasus.planner.client.RCClient
-
The total number of lines on which the client has worked on till yet.
- m_transformation - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Name of the: Transformation that produced this invocation.
- m_truncated - Variable in class edu.isi.pegasus.planner.invocation.Data
-
Indicates, if the data is only partial.
- m_uid - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
numerical user id of the effective user.
- m_uid - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
user id of the owner of the file.
- m_umask - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Currently active umask while kickstart was executing.
- m_uname - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Architectural information.
- m_uname - Variable in class edu.isi.pegasus.planner.invocation.Machine
-
The uname child element is mandatory.
- m_usage - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Total resource consumption by gridlaunch and all siblings.
- m_usage - Variable in class edu.isi.pegasus.planner.invocation.Job
-
Resource usage of this job.
- m_usage1 - Static variable in class edu.isi.pegasus.planner.client.ExitCode
-
Just a string to denote the short usage.
- m_user - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
symbolical user name of the effective user.
- m_user - Variable in class edu.isi.pegasus.planner.invocation.StatInfo
-
symbolical user name of the effective user.
- m_utime - Variable in class edu.isi.pegasus.planner.invocation.Usage
-
user time - time spent in user mode, seconds with fraction.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.Architecture
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.ArgEntry
-
argument vector value
- m_value - Variable in class edu.isi.pegasus.planner.invocation.ArgString
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.CommandLine
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.Data
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.EnvEntry
-
environment value
- m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
This is the signal name or message contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.invocation.WorkingDir
-
This is the data contained between the tags.
- m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.Identifier
-
This instance variable captures the token value for the reserved word.
- m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.QuotedString
-
This instance variable captures the token value for the quoted string.
- m_value - Variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
This instance variable captures the token value for the reserved word.
- m_verbose - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
How verbose should we be?
- m_version - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
protocol version information.
- m_warnings - Variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Counts the number of warnings.
- m_wf_label - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Workflow label, currently optional?
- m_wf_stamp - Variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Workflow timestamp to make the label more unique.
- m_wsize - Variable in class edu.isi.pegasus.planner.invocation.Fifo
-
optional number of bytes written - but not to the FIFO.
- mAbstractChildID - Variable in class edu.isi.pegasus.planner.classes.PCRelation
-
The abstract id for the child node.
- mAbstractDag - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The abstract DAG.
- mAbstractGraph - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The map containing the a graph node for each of the jobs referred to in the dax.
- mAbstractParentID - Variable in class edu.isi.pegasus.planner.classes.PCRelation
-
The abstract id for the parent node.
- Machine - Class in edu.isi.pegasus.planner.invocation
-
The Machine element groups a time stamp, the page size, the generic utsname information, and a machine-specific content collecting element.
- Machine() - Constructor for class edu.isi.pegasus.planner.invocation.Machine
-
Default constructor.
- MACHINE_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The release attribute for the uname
- MachineInfo - Class in edu.isi.pegasus.planner.invocation
-
An abstract class that is used for all the child elements that appear in the machine element.
- MachineInfo() - Constructor for class edu.isi.pegasus.planner.invocation.MachineInfo
-
Default constructor.
- MachineSpecific - Class in edu.isi.pegasus.planner.invocation
-
This class collects the various OS-specific elements that we are capturing machine information for.
- MachineSpecific(String) - Constructor for class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Default constructor.
- macosx - edu.isi.pegasus.planner.dax.Executable.OS
- MACOSX - edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
- MACOSX - edu.isi.pegasus.planner.dax.Executable.OS
- mAddDataDependencies - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
To track whether we auto detect data dependancies or not.
- mAddNodesForSettingXBit - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
A boolean indicating whether chmod jobs should be created that set the xbit in case of executable staging.
- mAddNodesForSettingXBit - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
A boolean indicating whether chmod jobs should be created that set the xbit in case of executable staging.
- mAddNodesForSettingXBit - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
A boolean indicating whether chmod jobs should be created that set the xbit in case of executable staging.
- mAdjFName - Variable in class edu.isi.pegasus.planner.parser.Parser
-
Boolean flag to ensure that two adjacent filenames are separated by a whitespace.
- mAggregatorTable - Static variable in class edu.isi.pegasus.planner.namespace.Globus
-
The table that maps the various globus profile keys to their aggregator functions.
- main(String[]) - Static method in class edu.isi.ikcap.workflows.util.logging.Escape
-
Test program.
- main(String[]) - Static method in class edu.isi.pegasus.common.logging.TestLogFormatter
- main(String[]) - Static method in class edu.isi.pegasus.common.util.CommonProperties
- main(String[]) - Static method in class edu.isi.pegasus.common.util.CondorVersion
-
The main program to test.
- main(String[]) - Static method in class edu.isi.pegasus.common.util.Escape
-
Test program.
- main(String[]) - Static method in class edu.isi.pegasus.common.util.FindExecutable
-
Test function for the class
- main(String[]) - Static method in class edu.isi.pegasus.common.util.PegasusURL
-
Test program
- main(String[]) - Static method in class edu.isi.pegasus.common.util.ProfileParser
-
Test program.
- main(String[]) - Static method in class edu.isi.pegasus.common.util.Separator2Test
- main(String[]) - Static method in class edu.isi.pegasus.common.util.SeparatorTest
- main(String[]) - Static method in class edu.isi.pegasus.gridftp.PegasusGridFTP
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.classes.Profiles
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
The main program
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.replica.TestReplicaCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.classes.CreateSampleSiteCatalog
-
The main program
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.TestSiteCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.TestSiteCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.site.TestVORSSiteCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TestTransformationCatalog
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.CPlanner
-
The main program for the CPlanner.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.DAXValidator
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.ExitCode
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.PartitionDAX
-
The main function of the class, that is invoked by the jvm.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
The main program
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.RankDAX
-
The main program for the CPlanner.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.RCClient
-
Manipulate entries in a given replica catalog implementation.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.SCClient
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.TCClient
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.TCConverter
-
The main function
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The main test program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.client.VersionNumber
- main(String[]) - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
A Test program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Test program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.dax.ADAG
-
Create an example DIAMOND DAX
- main(String[]) - Static method in class edu.isi.pegasus.planner.dax.examples.Diamond
-
Create an example DIAMOND DAX
- main(String[]) - Static method in class edu.isi.pegasus.planner.dax.examples.Pipeline
- main(String[]) - Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
- main(String[]) - Static method in class edu.isi.pegasus.planner.namespace.TestNamespace
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The main program.
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.IVPTest
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.TestDAXParser
-
The main program to TestDAXParser.
- main(String[]) - Static method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Test function.
- main(String[]) - Static method in class edu.isi.pegasus.planner.provisioner.Estimator
- main(String[]) - Static method in class edu.isi.pegasus.planner.ranking.GetDAX
-
For Testing purposes only.
- main(String[]) - Static method in class edu.isi.pegasus.planner.refiner.Authenticate
- main(String[]) - Static method in class edu.isi.pegasus.planner.refiner.AuthenticateEngine
-
The main testing method.
- main(String[]) - Static method in class edu.isi.pegasus.planner.refiner.TestReduceEdges
- main(String[]) - Static method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The main program that allows you to test.
- main(String[]) - Static method in class edu.isi.pegasus.planner.transfer.TestTPT
- main(String[]) - Static method in class ShowProperties
-
Runs the main program.
- MainEngine - Class in edu.isi.pegasus.planner.refiner
-
The central class that calls out to the various other components of Pegasus.
- MainEngine(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.MainEngine
-
This constructor initialises the class variables to the variables passed.
- MAJOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
The constant for the major version type.
- makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Enables the abstract clustered job for execution and converts it to it's executable form
- makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Enables the abstract clustered job for execution and converts it to it's executable form.
- makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Enables the abstract clustered job for execution and converts it to it's executable form.
- makeAbstractAggregatedJobConcrete(AggregatedJob) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Enables the abstract clustered job for execution and converts it to it's executable form
- makeCreateDirJob(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
It creates a make directoryURL job that creates a directoryURL on the remote pool using the perl executable that Gaurang wrote.
- makeCreateDirJob(String, String, String) - Method in interface edu.isi.pegasus.planner.refiner.createdir.Implementation
-
It creates a make directory job that creates a directory on the remote pool using the perl executable that Gaurang wrote.
- MakeDirectoryCommand - Class in edu.isi.pegasus.gridftp
-
Implements the mkdir command for remote GridFTP servers
- MakeDirectoryCommand(boolean, boolean) - Constructor for class edu.isi.pegasus.gridftp.MakeDirectoryCommand
- makeDummyConcatJob(ADag) - Method in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
It creates a dummy concat job that is run at the local submit host.
- makeIntermediate - Variable in class edu.isi.pegasus.gridftp.MakeDirectoryCommand
- makeRCRegNode(String, Job, Collection) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
It constructs the Job object for the registration node, which registers the materialized files on the output pool in the RLS.
- makeRemoveDirJob(String, String) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
It creates a remove directory job that creates a directory on the remote pool using the perl executable that Gaurang wrote.
- makeRemoveDirJob(String, String, List<String>) - Method in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
It creates a remove directory job that creates a directory on the remote pool using the perl executable that Gaurang wrote.
- makeUntarJob(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It creates a untar job , that untars the worker package that is staged by the setup transfer job.
- MALFORMED_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
Either the key or the value specified is null or malformed.
- malformedKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Warns about a namespace profile key-value pair that is malformed.
- mAliases - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Set of alias names to be used for lookup.
- mAllDeletedJobs - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
List of all deleted jobs during workflow reduction.
- mAllDeletedNodes - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
List of all deleted jobs during workflow reduction.
- map(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Helper function to map prefixes correctly onto the elements.
- map(String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Maps a LFN to a location on the filsystem of a site and returns a single externally accessible URL corresponding to that location.
- map(String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Maps a LFN to a location on the filsystem of a site and returns a single externally accessible URL corresponding to that location.
- map(String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
Maps a LFN to a location on the filsystem of a site and returns a single externally accessible URL corresponding to that location.
- map(String, String, FileServerType.OPERATION) - Method in interface edu.isi.pegasus.planner.transfer.mapper.OutputMapper
-
Maps a LFN to a location on the filsystem of a site and returns a single externally accessible URL corresponding to that location.
- map(String, String, FileServerType.OPERATION, boolean) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Maps a LFN to a location on the filsystem of a site and returns a single externally accessible URL corresponding to that location.
- map(String, String, FileServerType.OPERATION, boolean) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Maps a LFN to a location on the filsystem of a site and returns a single externally accessible URL corresponding to that location.
- map(String, String, FileServerType.OPERATION, boolean) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
Maps a LFN to a location on the filsystem of a site and returns a single externally accessible URL corresponding to that location.
- map(String, String, FileServerType.OPERATION, boolean) - Method in interface edu.isi.pegasus.planner.transfer.mapper.OutputMapper
-
Maps a LFN to a location on the filsystem of a site and returns a single externally accessible URL corresponding to that location.
- mapAll(String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Maps a LFN to a location on the filsystem of a site and returns all the possible equivalent externally accessible URL corresponding to that location.
- mapAll(String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Maps a LFN to a location on the filesystem of a site and returns all the possible equivalent externally accessible URL corresponding to that location.
- mapAll(String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
Maps a LFN to a location on the filsystem of a site and returns all the possible equivalent externally accessible URL corresponding to that location.
- mapAll(String, String, FileServerType.OPERATION) - Method in interface edu.isi.pegasus.planner.transfer.mapper.OutputMapper
-
Maps a LFN to a location on the filsystem of a site and returns all the possible equivalent externally accessible URL corresponding to that location.
- MapGraph - Class in edu.isi.pegasus.planner.partitioner.graph
-
An implementation of the Graph that is backed by a Map.
- MapGraph() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The default constructor.
- MapGraph(boolean) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The overloaded constructor
- MapGraph.BottomUpIterator - Class in edu.isi.pegasus.planner.partitioner.graph
-
An inner iterator class that traverses through the Graph bottom up.
- MapGraph.MapGraphIterator - Class in edu.isi.pegasus.planner.partitioner.graph
-
An inner iterator class that traverses through the Graph.
- MapGraphIterator() - Constructor for class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
The default constructor.
- mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.AbstractPerJob
-
Maps a job in the workflow to the various grid sites.
- mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Calls out to the external site selector.
- mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.Random
-
Maps a job in the workflow to an execution site.
- mapJob(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
Maps a job in the workflow to an execution site.
- mapJob2ExecPool(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The call out to the site selector to determine on what pool the job should be scheduled.
- Mapper - Class in edu.isi.pegasus.planner.catalog.transformation
-
This is an interface for generating valid TC maps which will be used for executable staging.
- Mapper - Interface in edu.isi.pegasus.planner.transfer.mapper
-
An empty interface for all transfer Mappers that determine where a File should be on a particular site.
- Mapper(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
The private constructor.
- MapperException - Exception in edu.isi.pegasus.planner.transfer.mapper
-
The baseclass of the exception that is thrown by all Mappers.
- MapperException() - Constructor for exception edu.isi.pegasus.planner.transfer.mapper.MapperException
-
Constructs a
MapperException
with no detail message. - MapperException(String) - Constructor for exception edu.isi.pegasus.planner.transfer.mapper.MapperException
-
Constructs a
MapperException
with the specified detailed message. - MapperException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.mapper.MapperException
-
Constructs a
MapperException
with the specified detailed message and a cause. - MapperException(Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.mapper.MapperException
-
Constructs a
MapperException
with the specified just a cause. - mApplicationMetrics - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The application metrics that need to be forwarded
- mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.AbstractPerJob
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.Group
-
The call out to map a list of jobs on to the execution pools.
- mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.Heft
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(ADag, List) - Method in interface edu.isi.pegasus.planner.selector.SiteSelector
-
Maps the jobs in the workflow to the various grid sites.
- mapWorkflow(ADag, List, String) - Method in class edu.isi.pegasus.planner.selector.site.Heft
-
Maps the jobs in the workflow to the various grid sites.
- mArch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
An optional architecture type for the grid gateway.
- mArch - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Architecture the executable is compiled for
- mArchitecture - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The architecture.
- mArchType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The architecture type of the remote machines to which the jobmanager talks to.
- mArguments - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mArgumentTag - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
- mAssignDefaultJobPriorities - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Boolean indicating whether to assign job priorities or not.
- matches() - Method in class edu.isi.pegasus.common.util.Version
-
Determines, if the compiled version and the installed version match.
- matches(String) - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Matches a string against the compiled regex expression
- matchForStarProperties(String) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Returns a matching pegasus property for a VDS star property.
- matchingSubset(String, boolean) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Extracts a specific property key subset from the known properties.
- matchingSubset(String, boolean) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Extracts a specific property key subset from the known properties.
- matchingSubset(Properties, String, boolean) - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Extracts a specific property key subset from the properties passed.
- matchingSubset(Properties, String, boolean) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Extracts a specific property key subset from the known properties.
- matchMe(ReplicaCatalogEntry, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Attempts to see, if all keys in the partial replica catalog entry are contained in the full replica catalog entry.
- matchMe(ReplicaCatalogEntry, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Attempts to see, if all keys in the partial replica catalog entry are contained in the full replica catalog entry.
- matchMe(ReplicaCatalogEntry, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Attempts to see, if all keys in the partial replica catalog entry are contained in the full replica catalog entry.
- mAttributeMap - Variable in class edu.isi.pegasus.planner.invocation.MachineInfo
-
An internal maps that is indexed by attribute keys.
- mAttributes - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mAuthEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the Authentication Engine that performs the authentication with the various sites.
- mAuthenticate - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Whether to attempt authentication against the jobmanagers for the pools specified at runtime.
- mAuthRequest - Variable in class edu.isi.pegasus.planner.refiner.Authenticate
-
The object containing the authenticate request.
- mAvailable - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
Whether the thread is available to do some work or not.
- mAverageCommunicationCost - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The average communication cost between nodes.
- mAvgComputeTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The average compute time for a node.
- max - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
- MAX - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An implementation of the Aggregator interface that takes the maximum of the profile values.
- MAX() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.MAX
- max_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- Max_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- MAX_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- MAX_CACHE_ENTRIES - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
The maximum number of entries in the map, before the output site map is cleared.
- MAX_COUNT - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the maximum number of jobs that can be in the queue.
- MAX_CPU_TIME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the maxwalltime for the jobs.
- MAX_KEYS_PREFIX - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The prefix for the max keys
- MAX_NUMBER_OF_VERSION_COMPONENTS - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
The maximum number of components version can have.
- MAX_RUN_TIME - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that if set in the Pegasus namespace specifies the maximum amount of time for which a cluster should run.
- MAX_VERSION_PRECISION - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
The maximum number of digits each component of version can have.
- MAXIDLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for max idle setting for dagman
- MAXIMUM_FINISH_TIME - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The maximum finish time possible for a job.
- maxIndex - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
- MAXJOBS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for max jobs setting for dagman
- MAXPOST_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for max post setting for dagman
- MAXPRE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for max pre setting for dagman
- mBag - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
Handle to the PegasusBag
- mBag - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
The bag of Pegasus Initialization objects
- mBag - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The object containing the bag of pegasus objects
- mBag - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The bag of objects that Pegasus requires.
- mBag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
The bag of initialization objects
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Bag of Pegasus objects
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
- mBag - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
- mBag - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The bag of objects used for initialization.
- mBag - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
A Bag of objects that maybe associated with the node.
- mBag - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The pegasus bag.
- mBag - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The bag of initialization objects
- mBag - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The bag of initialization objects.
- mBag - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The bag of Pegasus objects.
- mBandWidths - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
- mBaseDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The base submit directory.
- mBaseDir - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The base directory where the ranked daxes are kept.
- mBasenamePrefix - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The basename prefix that is to be given to the per workflow file, like the log file, the .dag file, the .cache files etc.
- mBaseSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The base submit directory where the files are being created.
- mBoolean - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine.BooleanBag
-
The boolean value
- mBuffer - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Handle to a job arguments to handle mixed content.
- mBundles - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The list of
Chain
object. - mBypassStagingForInputs - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A boolean indicating whether to bypass first level staging for inputs
- mBypassStagingForInputs - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
A boolean indicating whether to bypass first level staging for inputs
- mBypassStagingForInputs - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
A boolean indicating whether to bypass first level staging for inputs
- mCacheFiles - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Set of cache files that need to be used, to determine the location of the transiency files.
- mCacheStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The replica store in which we store all the results that are queried from the cache replica catalogs.
- mCallback - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The callback to be used.
- mCallback - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The handle to the class implementing the callback interface.
- mCallback - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Handle to the callback
- mCallback - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The callback handler to which the callbacks are sent during designated points of parsing the pdax.
- mCapacity - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
The maximum number of transfer jobs that are allowed for this particular pool.
- mCapacity - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The maximum number of transfer jobs that are allowed for this particular pool.
- mCapacity - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The maximum number of transfer jobs that are allowed for this particular site.
- mCatalog - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
- mChain - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
The linked list that maintians the chain of names of the transfer jobs.
- mChild - Variable in class edu.isi.pegasus.planner.dax.Edge
-
The parent of the child
- mChild - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The current child.
- mChildren - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The list of children of the job/node in the abstract graph.
- mChmodDisabledForAllSites - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
A boolean indicating whether chmod is disabled for all sites.
- mChmodOnExecutionSiteMap - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
A map indexed by the execution site and value is the path to chmod on that site.
- mClassname - Variable in exception edu.isi.pegasus.common.util.FactoryException
-
The name of the class that was trying to be instantiated when this error occured, or some other signifier like module name.
- mCleanup - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
An enum tracking what type of cleanup needs to be done.
- mCleanupDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The cleanup dag for the final concrete dag.
- mCleanupJobsPerLevel - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The number of cleanup jobs per level to be created
- mCleanupJobsSize - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
the number of cleanup jobs clustered into a clustered cleanup job
- mCleanupScope - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The cleanup scope for the workflows.
- mCleanupScope - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The cleanup scope for the workflows.
- mClient - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The name of the client
- mClosedElement - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mClusteredADag - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The handle to the ADag object that contains the workflow being clustered.
- mClusteredRelations - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
The collection of relations, that is constructed for the clustered workflow.
- mClusterer - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Denotes what type of clustering needs to be done
- mClusterer - Variable in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
The handle to the clusterer that does the clustering.
- mClustererTable - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The table that maps a clustering technique to a clustering impelemntation.
- mCollapseMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
Map to hold the collapse values for the various execution pools.
- mCollectorHost - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The collector host to query to.
- mColor - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The color the node is colored.
- mCompiledPatterns - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Stores compiled patterns at first use, quasi-Singleton.
- mCompoundTransformations - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Map of Compound Transformations indexed by complete name of the compound transformation.
- mConcDag - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The concrete dag so far, for which the clean up dag needs to be generated.
- mConcDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The handle to the workflow that is being enabled.
- mConcreteWorkflow - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The workflow for which the code has to be generated.
- mCondorStatusError - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The List storing the stderr of condor-status.
- mCondorStatusOutput - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The List storing the output of condor-status.
- mCondorVersion - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The long value of condor version.
- mCondorVersion - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The long value of condor version.
- mCondorVersion - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The long value of condor version.
- mConfFile - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The conf option passed to the planner pointing to the properties file.
- mConnection - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Maintains the connection to the database over the lifetime of this instance.
- mConnection - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Maintains the connection to the database over the lifetime of this instance.
- mConnection - Variable in class edu.isi.pegasus.planner.catalog.work.Database
-
Maintains the connection to the database over the lifetime of this instance.
- mConnection - Variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
Maintains the connection to the database over the lifetime of this instance.
- mConnectionError - Static variable in class edu.isi.pegasus.planner.catalog.work.Database
-
This message is sent whenever one of the member function is executed which relies on an established database context.
- mConnectionParams - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Collection of connection parameters to use for connecting to that replica catalog.
- mConstructFlatLFN - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
A boolean indicating whether the catalog is to construct flat lfns or not
- mContact - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The contact string for the grid gateway.
- mContent - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The content associated with this node.
- mCount - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
Refers to the number of the Abstract Dags which are being sent to the Concrete Planner in response to the user's request.
- mCount - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The Count of the number of dax objects : N
- mCount - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
The number of times the word appears.
- mCreateEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The engine that ends up creating random directories in the remote execution pools.
- mCreateRegistrationJobs - Variable in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
Boolean indicating whether to create registration jobs or not.
- mCreateRegistrationJobs - Variable in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
Boolean indicating whether to create registration jobs or not.
- mCredential - Variable in class edu.isi.pegasus.planner.refiner.Authenticate
-
The credential to be used while authentication to jobmanager.
- mCredential - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The credential loaded from the non default location if specified.
- mCredentialFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
Handler to the Credential Handler factory.
- mCredentialFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
Handle to the Credential Handler Factory
- mCredentialsType - Variable in class edu.isi.pegasus.planner.classes.Job
-
Set of credential types required by a job to execute remotely.
- mCStatements - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
The statement to prepare to slurp attributes.
- mCStatements - Static variable in class edu.isi.pegasus.planner.catalog.work.Database
-
The statement to prepare to slurp attributes.
- mCStatements - Static variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
The statement to prepare to slurp attributes.
- mCurrentChildId - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
These store the current child element for the child parent relationship.
- mCurrentDag - Variable in class edu.isi.pegasus.planner.refiner.CreateDirectory
-
It is a reference to the Concrete Dag so far.
- mCurrentDag - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
It is a reference to the Concrete Dag so far.
- mCurrentDAGCacheFile - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Cache file for the current DAG
- mCurrentDepth - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The current depth of parsing through the xml structure.
- mCurrentDepth - Variable in class edu.isi.pegasus.planner.partitioner.BFS
-
The current depth of the nodes that are being traversed in the BFS.
- mCurrentDepth - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.BottomUpIterator
-
The current height of the nodes that are being traversed in the BFS starting from the leaf.
- mCurrentDepth - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
The current depth of the nodes that are being traversed in the BFS.
- mCurrentIndentIndex - Variable in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
The number of tabs to use for current indent
- mCurrentJobSubInfo - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Holds information regarding the current job being parsed.
- mCurrentLevel - Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
The current level in the abstract workflow.
- mCurrentNum - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The number of jobs about which the callback interface has knowledge.
- mCurrentNum - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The number of jobs about which the callback interface has knowledge.
- mCurrentNum - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The condition variable that is used to synchronize the shutdown.
- mCurrentProcessorIndex - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site
-
The index to the processor that is to be used for scheduling a job.
- mCurrentSILevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The current level of the jobs being traversed.
- mCurrentSILevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
The current level of the jobs being traversed.
- mCurrentSOLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The current level of the jobs being traversed.
- mCurrentSOLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The current level of the jobs being traversed.
- mDag - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The ADag object which contains information corresponding to the ADag in the XML file.
- mDag - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
ADag object corresponding to the Dag whose jobs we want to schedule.
- mDag - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The DAG being worked upon.
- mDag - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The DAG object to which the transfer nodes are to be added.
- mDAG - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
ADag object containing the jobs that have been scheduled by the site selector.
- mDAG - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
- mDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
- mDAG - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
- mDAG - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The workflow object.
- mDAG - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The ADag object associated with the Dag.
- mDAGFile - Variable in class edu.isi.pegasus.planner.classes.DAGJob
-
The DAG File that the job refers to.
- mDAGInfo - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The DagInfo object which contains the information got from parsing the dax file.
- mDAGLFN - Variable in class edu.isi.pegasus.planner.classes.DAGJob
-
The DAG LFN.
- mDAGLFN - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The file attribute encountered in the dag element.
- mDAGManKnobs - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Any extra arguments that need to be passed to dagman, as determined from the properties file.
- mDagWriter - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The file handle to the .dag file.
- mDAGWriter - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The print writer handle to DAG file being written out.
- mDatabase - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database type.
- mDatabaseAbsolutePath - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the absolute path to the mysql home directory
- mDatabaseHost - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the database host name
- mDatabaseHost - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database host .
- mDatabaseName - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the database name
- mDatabaseName - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database name.
- mDatabasePassword - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database user password.
- mDatabaseTC - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
- mDatabaseURL - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database type.
- mDatabaseUserName - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The database user name.
- mDataConfiguration - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The UUID associated with the workflow.
- mDate - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Stores the time at which the planning process started.
- mDaxFile - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The dax file that is being partitioned.
- mDAXFile - Variable in class edu.isi.pegasus.planner.classes.DAXJob
-
The DAX File that the job refers to.
- mDAXFile - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The dax file which contains the abstract dag.
- mDAXFile - Variable in class edu.isi.pegasus.planner.client.PartitionDAX
-
The path to the dax file that is to be partitioned.
- mDAXInMemory - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The flag to identify that dax is in memory.
- mDAXJobIDToSubmitDirectoryCacheFile - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Maps a sub dax job id to it's submit directory.
- mDAXLabel - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The label of the dax.
- mDAXLFN - Variable in class edu.isi.pegasus.planner.classes.DAXJob
-
The DAX LFN.
- mDAXLFN - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The file attribute encountered in the dax element.
- mDAXMTime - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
Keeps the last modified time of the DAX.
- mDAXPath - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The path to the DAX that was planned by the workflow.
- mDAXReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The DAX Replica Store.
- mDaxSchemaVersion - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
- mDAXTransformationStore - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Handle to the transformation store that stores the transformation catalog user specifies in the DAX
- mDAXVersion - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The DAX Version
- mDAXWriter - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The handle to the dax writer that writes out the dax corresponding to the partition identified.
- mDebugLevel - Variable in class edu.isi.pegasus.common.logging.LogManager
-
The debug level.
- mDeepStorageStructure - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
A boolean indicating whether to have a deep directory structure for the storage directory or not.
- mDeepStorageStructure - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
A boolean indicating whether to have a deep directory structure for the storage directory or not.
- mDefaultAggregator - Static variable in class edu.isi.pegasus.planner.namespace.Globus
-
The default aggregator to be used for profile aggregation, if none specified in the aggregator table;
- mDefaultBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.BundleValue
-
The default bundle value to use.
- mDefaultBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
The default bundle value to use.
- mDefaultCallback - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
An instance of the default stream gobbler callback implementation that is used for creating symbolic links.
- mDefaultGroup - Static variable in class edu.isi.pegasus.planner.selector.site.Group
-
The name of the group into which jobs are grouped if no group is specified in the dax.
- mDefaultPoolFile - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default path to the pool file.
- mDefaultProfileKey - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.BundleValue
-
The Default Pegasus profile key to use for lookup
- mDefaultProfileKey - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
The Default Pegasus profile key to use for lookup
- mDefaultTC - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default path to the transformation catalog.
- mDefaultTCRCCreated - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
A boolean indicating whether the attempt to create a default tc entry has happened or not.
- mDefaultTCRCEntry - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The default tc entry.
- mDefaultTransferPriority - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The default transfer priority that needs to be applied to the transfer jobs.
- mDeferredRun - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A boolean indicating whether the planner invocation is part of a larger deferred planning run.
- mDeletedJobs - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Holds all the jobs deleted by the reduction algorithm.
- mDependencies - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
Map of Dependencies between Job,DAX,DAG objects.
- mDeprecatedProperties - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The set containing the deprecated properties specified by the user.
- mDeprecatedTable - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The table containing the mapping of the deprecated keys to the newer keys.
- mDepth - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
Count the depths of elements in the document
- mDepth - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The depth of the node from the root or any arbitary node.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Default
-
A short description of the replica selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Local
-
A short description of the replica selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Regex
-
A short description of the replica selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
A short description of the replica selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.site.Group
-
The description of the site selector.
- mDescription - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The description of the site selector.
- mDestMap - Variable in class edu.isi.pegasus.planner.classes.FileTransfer
-
The map containing all the destination urls keyed by the pool id/name.
- mDirectories - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
A Map of different directories indexed by Directory.TYPE associated with the site catalog entry
- mDirectory - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Records the name of the on-disk representation.
- mDirectory - Variable in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Keep track of which directories are found in the site.
- mDirectory - Variable in class edu.isi.pegasus.planner.classes.DAGJob
-
The directory in which the DAG needs to execute.
- mDirectory - Variable in class edu.isi.pegasus.planner.classes.DAXJob
-
The directory in which the DAX needs to execute.
- mDirectory - Variable in class edu.isi.pegasus.planner.classes.Job
-
The directory in which the job should run.
- mDirectory - Variable in class edu.isi.pegasus.planner.client.PartitionDAX
-
The directory in which the partition daxes are generated.
- mDirectory - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The directory, where the stdin file of the fat jobs are created.
- mDirectory - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The directory, where the stdin file of the fat jobs are created.
- mDirectoryReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The replica store where we store all the results that are queried from the input directory specified at the command line.
- mDirectoryURL - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Externally accessible URL
- mDisabledChmodSites - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The set of sites for which chmod job creation has to be disabled while doing executable staging.
- mDisableInvokeFunctionality - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Boolean indicating whether to disable invoke functionality.
- mDisplayHelp - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
To Display help or not.
- mDone - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
A boolean indicating whether the files have been generated or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
A flag to specify whether the graph has been generated for the partition or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
A flag to specify whether the graph has been generated for the partition or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
A flag to specify whether the graph has been generated for the partition or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
A flag to specify whether the graph has been generated for the partition or not.
- mDone - Variable in class edu.isi.pegasus.planner.parser.dax.ExampleDAXCallback
- mDone - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
A flag to store whether the parsing is complete or not.
- mDoNotClean - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
HashSet of Files that should not be cleaned up
- mDoStat - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether to stat files or not.
- mDownwardRank - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The downward rank for a node.
- mDriver - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the driver string
- Mds_Computer_Isa - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Computer_Total_Free_NodeCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Computer_Total_NodeCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Gram_Job_Queue_MaxCount - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Gram_Job_Queue_MaxCpuTime - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Gram_Job_Queue_MaxJobsInQueue - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Gram_Job_Queue_MaxRunningJobs - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Memory_Ram_FreeSizeMB - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Memory_Ram_Total_SizeMB - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Os_Name - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Service_Gram_SchedulerType - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Mds_Subnetid - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- mdsbaseDN - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- mdshost - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- mdsport - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- MdsQuery - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
This Class queries the GT2 based Monitoring and Discovery Service (MDS) and stores the remote sites information into a single data class.
- MdsQuery() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
C'tor for the class.
- MdsQuery(String, int) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Valid C'tor for the class to create a MdsQuery object.
- mDuration - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The planning duration
- mDynamicDeployment - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether kickstart is deployed dynamically or not.
- mElement - Variable in class edu.isi.pegasus.planner.parser.ParserStackElement
- mElement - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
The root element name to look for.
- mEmptyElement - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
An instance variable to track if enabling is happening as part of a clustered constituentJob.
- mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
An instance variable to track if enabling is happening as part of a clustered job.
- mEnablingPartOfAggregatedJob - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
An instance variable to track if enabling is happening as part of a clustered job.
- mEncode - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
The value to encode to
- mEncodeable - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Defines the character that requires encoding
- mEnd - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The time when end message for the event was generated
- mEndSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.Stork
-
The nice end separator, define once, use often.
- mEndTime - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The end time for the planning.
- mEndTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The estimated end time for a job.
- mEndTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.Processor
-
The end time of the current scheduled job.
- mEnvVar - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The map that contains the environment variables including the default ones that are set while calling out to the site selector unless they are overridden by the values set in the properties file.
- merge(ReplicaCatalogEntry, boolean) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Merges the attribute maps in a controlled fashion.
- merge(ReplicaCatalogEntry, ReplicaCatalogEntry, boolean) - Static method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Merges the attribute maps of two entries in a controlled fashion.
- merge(ReplicaLocation) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Merges the
ReplicaLocation
object to the existing one, only if the logical filenames match. - merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
UniqueMerge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Merge the profiles in the namespace in a controlled manner.
- merge(Namespace) - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Merge the profiles in the namespace in a controlled manner.
- mergeProfiles(Job) - Method in class edu.isi.pegasus.planner.classes.Job
-
Merges profiles from another job to this job in a controlled fashion.
- mErrorMessage - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The error message to be logged
- mErrStream - Variable in class edu.isi.pegasus.common.logging.logger.Default
-
The stream to which all the error messages are logged.By default it is System.err
- mEscapable - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Defines the set of characters that require escaping.
- mEscape - Static variable in class edu.isi.pegasus.planner.classes.Profile
-
A private static handle to the escape class.
- mEscape - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Defines the character used to escape characters.
- MESSAGE_DONE_PREFIX - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
Suffx for an event completion message.
- MetaData - Class in edu.isi.pegasus.planner.dax
-
Metadata object for the DAX API
- MetaData(MetaData) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
-
Copy constructor
- MetaData(String, String) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
-
Create a new Metadata object
- MetaData(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.MetaData
-
Create a new Metadata object
- method - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- Metrics - Class in edu.isi.pegasus.planner.code.generator
-
Logs workflow metrics to a file in the submit directory and also sends them over a HTTP connection to a Metrics Server.
- Metrics() - Constructor for class edu.isi.pegasus.planner.code.generator.Metrics
- METRICS_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The suffix to use while constructing the name of the metrics file
- METRICS_SEND_TIMEOUT - Static variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The timeout in seconds for sending the metrics to the server
- METRICS_SERVER_DEFAULT_URL - Static variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The default URL for the metrics server to use
- mEventBuffer - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The buffer that stores information about the event
- mExecPools - Variable in class edu.isi.pegasus.planner.refiner.AuthenticateEngine
-
The Set of pools that need to be authenticated against.
- mExecPools - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Set of the execution pools which the user has specified.
- mExecPools - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The pools on which the Dag should be executed as specified by the user.
- mExecPools - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The Set of pools that need to be authenticated against.
- mExecPools - Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin
-
The list of pools that have been given by the user at run time or has been authenticated against.
- mExecutable - Variable in class edu.isi.pegasus.planner.dax.File
-
Is the file an executable.
- mExecutables - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The list of Executable objects
- mExecutionToHintsNamespace - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The map that maps keys in execution tag to hints namespace.
- mExitcode - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
the exitcode of the planner
- mExitParserArguments - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The argument string containing the arguments with which the exitcode is invoked on kickstart output.
- mExitParserPath - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The path to the exitcode client that parses the exit status of the kickstart.
- mExtraArguments - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Any extra arguments that need to be passed ahead to the s3 client invocation.
- mFactory - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
Handle to the Credential Factory
- mFactory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The handle to the file factory, that is used to create the top level directories for each of the partitions.
- mFactory - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The handle to the file factory, that is used to create the top level directories for each of the partitions.
- mFactory - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
- mFailOnFirstError - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Flag indicating whether to fail on first hard error or not.
- mFileCreationMap - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Map to track a LFN with the job that creates the file corresponding to the LFN.
- mFilename - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
The Site Catalog file to be parser.
- mFilename - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
The Site Catalog file to be parser.
- mFileName - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The fully qaulified path to the file being written.
- mFiles - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The list of edu.isi.pegasus.planner.dax.File objects
- mFileServer - Variable in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Keep track of which file servers are listed in the specified directories.
- mFileServers - Variable in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
The list of file servers that can be used to write to access this directory indexed by operation type.
- mFileTable - Variable in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
A Map containing information about which logical file has been transferred to which site and the name of the stagein transfer node that is transferring the file from the location returned from the replica catalog.
- mFileTable - Variable in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
A Map containing information about which logical file has been transferred to which site and the name of the stagein transfer node that is transferring the file from the location returned from the replica catalog.
- mFileTXList - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
The collection of
FileTransfer
objects containing the transfers the job is responsible for. - mFileTXList - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The collection of
FileTransfer
objects containing the transfers the job is responsible for. - mFlags - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The transient flags field which is kept as a bit field.
- mFlowID - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
It is a unique identifier identifying the concrete DAG generated by Pegasus.
- mFlowIDName - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
It is the name of the dag as generated by Chimera in the dax.
- mFlowTimestamp - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The ISO timestamp corresponding to the time when Pegasus is invoked for a dax.
- mFlushOnClose - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Boolean indicating whether to flush the contents back to the file on close.
- mFlushOnClose - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Boolean indicating whether to flush the contents back to the file on close.
- mForce - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The force option to make a build dag from scratch.
- mForceReplan - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the force replan option
- mFormatter - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
This is used to format the time stamp.
- mForwardOptions - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The options that need to be passed forward to pegasus-run.
- mFreeMem - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The free memory that the jobmanager reports.
- mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
The free space on the file system.
- mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The free space at the grid ftp server.
- mFreeSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The free space available at the file system under this directory.
- mFTMap - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The FileTransfer map indexed by site id.
- mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether to generate lof files or not.
- mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
A boolean indicating whether to generate lof files or not.
- mGenerateLOF - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
A boolean indicating whether to generate lof files or not.
- mGenRandomDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Whether to create a random directory in the execution directory that is determined from the exec mount point in the pool configuration file.
- mGetOperations - Static variable in enum edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
- mGetRCCache - Variable in class edu.isi.pegasus.planner.classes.PlannerCache
-
The cache storing the GET urls for the files in the workflow
- mGlibc - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The Glibc version.
- mGlibc - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Optional information about the glibc.
- mGlibc - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Glibc the executable is compiled for
- mGlobalIgnoredSites - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
The Set of ignored sites, that are ignored for selecting replicas for all sites.
- mGlobalLog - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Flag indicating whether a global log file or per job file.
- mGlobalPreferredSites - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
The set of preferred sites, that are preferred stagein sites for all sites.
- mGlobusVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The version of Globus Toolkit that was used to install the grid ftp server.
- mGlobusVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The globus version that is installed on the remote site.
- mGraph - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
The partition that has to be sorted.
- mGraph - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The map containing all the graph nodes.
- mGraph - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The internal map that contains the adjacency list representation of the Graph referred to by the workflow.
- mGraphImplementor - Variable in class edu.isi.pegasus.planner.classes.ADag
-
Handle to the Graph implementor.
- mGraphImplementor - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Handle to the Graph implementor.
- mGrid - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The grid to which the user belongs to.
- mGrid - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
- mGridFTPList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The list of
GridFTPServer
objects that contain the information about the gridftp servers on the remote site. - mGridGateways - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Map of grid gateways at the site for submitting different job types.
- mGridGateways - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Map of grid gateways at the site for submitting different job types.
- mGridLaunch - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The path to the kickstart on the remote site.
- mGridStartFactory - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The handle to the GridStart Factory.
- mGridStartFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The handle to the GridStart Factory.
- mGridStartFactory - Variable in class edu.isi.pegasus.planner.code.generator.PMC
-
The handle to the GridStart Factory.
- mGridStartFactory - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
The handle to the GridStart Factory.
- mGridStartImplementationTable - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
A table that maps short names of
GridStart
implementations with the implementations themselves. - mGroupMap - Variable in class edu.isi.pegasus.planner.selector.site.Group
-
The map containing the the jobs grouped by the key group.
- mHandle - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The handle to the site, usually name of the site.
- mHasBeenRenderedToExecutableForm - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Boolean indicating whether a job has been fully rendered to an executable job or not i.e the aggregated job has been mapped to the aggregator and the constituent jobs have been gridstarted or not.
- mHeader - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mHeadFS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The handle to the head node filesystem.
- mHeft - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The handle to the ranking algorithm.
- mHeftImpl - Variable in class edu.isi.pegasus.planner.selector.site.Heft
-
An instance of the class that implements the HEFT algorithm.
- mHost - Variable in class edu.isi.pegasus.common.util.PegasusURL
-
The hostname referred to by the PegasusURL.
- mHost - Variable in class edu.isi.pegasus.planner.refiner.Authenticate.HostPort
-
The host at which the server is running.
- micro0 - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- micro1 - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- micro2 - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- mId - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mID - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The site identifier.
- mID - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The site identifier.
- mID - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The partition id of the partition.
- mIDCounter - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
The global counter that is used to assign ID's to the partitions.
- mIdleNodes - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The number of idle nodes.
- mIdleNodes - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The total number of idle nodes that the jobmanager reports are on the remote site.
- mIgnoredSitesMap - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
A Map indexed by site handles, that contains a set of site handles.
- mImpl - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The handle to the CleanupImplementation instance that creates the jobs for us.
- mImpl - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
The implementation instance that is used to create a create dir job.
- mImplementingClassNameTable - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
A table that maps, Pegasus style keys to the names of the corresponding classes implementing the CondorStyle interface.
- mImplementingClassNameTable - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
A table that maps, Pegasus style keys to the names of the corresponding classes implementing the CondorStyle interface.
- mImplementingClassNameTable - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
A table that maps, Pegasus style keys to the names of the corresponding classes implementing the CondorStyle interface.
- mImplementingClassTable - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
A table that maps, Pegasus style keys to appropriate classes implementing the CredentialHandler interface
- mImplementingClassTable - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
A table that maps, Pegasus style keys to appropriate classes implementing the JobAggregator interface
- mImplementingClassTable - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
A table that maps, Pegasus style keys to appropriate classes implementing the CondorStyle interface
- MIN - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An implementation of the Aggregator interface that takes the minimum of the profile values.
- MIN() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.MIN
- min_bandwidth - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- Min_Bandwidth - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- MIN_BW - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- mInDegree - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
An array that contains the number of incoming edges to a node.
- mInDegree - Variable in class edu.isi.pegasus.planner.partitioner.Topological
-
An array that contains the number of incoming edges to a node.
- mIndex - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
Refers to the number of the Dag.
- mIndex - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The Index of the dax object.
- mIndex - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The index of the partition that is being written out.
- mIndex - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The index associated with the partition.
- mIndex - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
The unique identifying id of the thread.
- mIndexMap - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
A Map that returns the index into mInDegree map for a particular node in graph.
- mIndexMap - Variable in class edu.isi.pegasus.planner.partitioner.Topological
-
A Map that returns the index into mInDegree map for a particular node in graph.
- mInheritedRCFiles - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Set of replica catalog files that are inherited by a planning instance.
- mInheritedReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The inherited Replica Store
- Minimal - Class in edu.isi.pegasus.planner.refiner.createdir
-
This strategy for adding create dir jobs to the workflow only adds the minimum number of edges from the create dir job to the compute jobs in the workflow.
- Minimal() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.Minimal
- mInitialized - Variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
A boolean indicating that the factory has been initialized.
- mInitialized - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
A boolean indicating that the factory has been initialized.
- mInitialized - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
A boolean indicating that the factory has been initialized.
- mInitialized - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
A boolean indicating that the factory has been initialized.
- mInitializeGridStart - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
A boolean indicating whether grid start has been initialized or not.
- mInitializeGridStart - Variable in class edu.isi.pegasus.planner.code.generator.PBS
-
A boolean indicating whether grid start has been initialized or not.
- mInitializeGridStart - Variable in class edu.isi.pegasus.planner.code.generator.PMC
-
A boolean indicating whether grid start has been initialized or not.
- mInitializeGridStart - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
A boolean indicating whether grid start has been initialized or not.
- MINOR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
The constant for the minor version type.
- mInputDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
the input directory
- mInputFile - Variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The input directory containing the kickstart records.
- mInputFiles - Variable in class edu.isi.pegasus.planner.client.SCClient
-
The input files.
- mInputFiles - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The input files.
- mInputFormat - Variable in class edu.isi.pegasus.planner.client.SCClient
-
The input format for the site catalog.
- mInputFormat - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The input format for the transformation catalog.
- mInputReader - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Stores the stream from which we are currently scanning.
- mInstalled - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Flag to mark if the executable is installed or can be staged.
- mInstance - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
-
The singleton instance of the PPS implementation that is returned.
- mInternalMount - Variable in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
The internal mount point for the directory.
- mInvokeAlways - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether to use invoke always or not.
- mInvokeLength - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The invoke limit trigger.
- mInvokeMap - Variable in class edu.isi.pegasus.planner.classes.Notifications
-
An enum map that associates the various notification events with the list of actions that need to be taken.
- mInvokes - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mInvokes - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
List of Notification objects
- mInvokes - Variable in class edu.isi.pegasus.planner.dax.Executable
-
List of Notification objects
- mInvokes - Variable in class edu.isi.pegasus.planner.dax.Transformation
- mIPEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the InterPool Engine that calls out to the Site Selector and maps the jobs.
- mIPStream - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The input stream that is to be read from.
- missingKeyError(Job, String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Constructs an error message in case of style mismatch.
- mJob - Variable in class edu.isi.pegasus.planner.classes.FileTransfer
-
The logical name of the asssociated VDS super node, with which the file is associated.
- mJobAggregator - Variable in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Handle to the JobAggregator that created this job.
- mJobAggregatorFactory - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
The handle to the job aggregator factory.
- mJobAggregatorFactory - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The handle to the job aggregator factory.
- mJobComparator - Static variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
A singleton access to the job comparator.
- mJobExecutablesStaged - Variable in class edu.isi.pegasus.planner.classes.Job
-
Boolean indicating whether the job executables were staged for it or not.
- mJobManagerList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The list of
JobManager
objects that contain the information about the jobmanagers associated with the remote site. - mJobManagerType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The type of remote scheduler to which the jobmanager talks to.
- mJobMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
Map to hold the jobs sorted by the label of jobs in dax.
- mJobMap - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The mapping of the idrefs of a job to the job name.
- mJobMap - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The internal map that maps the partition id to the job responsible for executing the partition..
- mJobMap - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The map containing all the jobs in the dax indexed by the job id.
- mJobName - Variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the job (jobname) to which the profiles for this namespace belong.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The prefix that is to be applied while constructing job names.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The job prefix that needs to be applied to the job file basenames.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
A job prefix specifed at command line.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
The job prefix that needs to be applied to the job file basenames.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The job prefix that needs to be applied to the job file basenames.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The job prefix that needs to be applied to the job file basenames.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The job prefix that needs to be applied to the job file basenames.
- mJobPrefix - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The job prefix that needs to be applied to the job file basenames.
- mJobs - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The List of Job,DAX and DAG objects
- mJobsInQueue - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The number of jobs in the remote queue at the remote site.
- mJobType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The type of jobs that this grid gateway can accept.
- mkdir(GridFTPConnection, String) - Method in class edu.isi.pegasus.gridftp.MakeDirectoryCommand
- mkdir(String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
Create directory path
- mKeepTMP - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The tristate value for whether keeping the temporary files generated or not.
- mKey - Variable in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
The connection key.
- mKey - Variable in class edu.isi.pegasus.planner.classes.Profile
- mKey - Variable in class edu.isi.pegasus.planner.dax.MetaData
-
Metadata Key
- mKey - Variable in class edu.isi.pegasus.planner.dax.Profile
-
Key of the profile
- mKeys - Variable in class edu.isi.pegasus.planner.namespace.aggregator.UniqueMerge
- mKickstartGridStartImpl - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Handle to kickstart GridStart implementation.
- mKickstartLabel - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The label that is passed to kickstart.
- mLabel - Variable in class edu.isi.pegasus.planner.dax.Edge
-
The edge label for the parent child relationship.
- mLabel - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The label of the abstract dax as set by Chimera.
- mLabel - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
The label of the abstract dax.
- mLabel - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The label of the workflow.
- mLabelKey - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
The profile key that is used for the labelling.
- mLastAddedNode - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
A pointer to the last added node to the partition.
- mLastDirectoryTraversed - Variable in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Track which type of directory was traversed last.
- mLDAGs - Variable in class edu.isi.pegasus.planner.dax.ADAG
- mLDAXs - Variable in class edu.isi.pegasus.planner.dax.ADAG
- mLevel - Variable in class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback
-
The level on which the messages are to be logged.
- mLevelList - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.BottomUpIterator
-
A temporary list that stores all the nodes on a particular level.
- mLevelList - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
A temporary list that stores all the nodes on a particular level.
- mLFN - Variable in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
The LFN associated with the entry.
- mLFNMap - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Maintains a memory slurp of the file representation.
- mLineSeparator - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mLink - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
Linkage of the file.
- mLink - Variable in class edu.isi.pegasus.planner.dax.File
- mList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback
-
The ArrayList where the lines are stored.
- mLJobs - Variable in class edu.isi.pegasus.planner.dax.ADAG
- mLoadAll - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
A boolean indicating whether to load all sites.
- mLoadAll - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
A boolean indicating whether to load all sites.
- mLocalCredentialPath - Variable in class edu.isi.pegasus.common.credential.impl.Irods
-
The local path to the credential
- mLocalCredentialPath - Variable in class edu.isi.pegasus.common.credential.impl.S3CFG
-
The local path to the credential
- mLocalCredentialPath - Variable in class edu.isi.pegasus.common.credential.impl.Ssh
-
The local path to the credential
- mLocalDirectory - Variable in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
The local directory on the node.
- mLocalEnv - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The namespace object holding the environment variables for local pool.
- mLocalIrodsEnv - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The path to the irodsEnv file on the submit host (local pool).
- mLocalIrodsEnvBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The basename of the user irodsEnv file
- mLocalPathToPegasusLiteCommon - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The local path on the submit host to pegasus-lite-common.sh
- mLocalProxyPath - Variable in class edu.isi.pegasus.common.credential.impl.Proxy
-
The local path to the user proxy
- mLocalS3cfg - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The path to the s3cfg file on the submit host (local pool).
- mLocalS3cfgBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The basename of the user s3cfg file
- mLocalTransfer - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
boolean indicating whether the transfer job needs to run on local site
- mLocalTransfer - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
boolean indicating whether the transfer job needs to run on local site
- mLocalTransfers - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Map that indicates whether we need local setup transfer jobs for a site or not.
- mLocalUserProxy - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The path to the user proxy on the submit host (local pool), that is picked up for use in transfer of proxies.
- mLocalUserProxyBasename - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The basename of the user proxy , that is picked up for use in transfer of proxies.
- mLocator - Variable in class edu.isi.pegasus.planner.parser.Parser
-
Locator object to determine on which line in the xml has the error occured.
- mLockTaskMetrics - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
A boolean indicating whether to update task metrics
- mLog4jConf - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The log4j system property
- mLogBuffer - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The buffer that stores information about the log message
- mLogEvent - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
The current event object.
- mLogFormatter - Variable in class edu.isi.pegasus.common.logging.LogManager
-
The LogFormatter to use to format the message.
- mLogFormatter - Variable in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
The handle to the netlogger log formatter.
- mLogFormatter - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The handle to the netlogger log formatter.
- mLogger - Variable in class edu.isi.pegasus.common.credential.impl.Abstract
-
A handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.common.logging.logger.Log4j
-
The handle to a log4j logger object.
- mLogger - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
Ensures only one object is created always.
- mLogger - Variable in class edu.isi.pegasus.common.util.CondorVersion
-
The default logger.
- mLogger - Variable in class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback
-
The instance to the logger to log messages.
- mLogger - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The LogManager object which is used to log all the messages.
- mLogger - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The handle to the log manager.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
The handle to the log manager.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
The Logging instance.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
The default logger.
- mLogger - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Handle to the logger.
- mLogger - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
- mLogger - Variable in class edu.isi.pegasus.planner.catalog.work.Database
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.classes.Data
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the LogManager.
- mLogger - Variable in class edu.isi.pegasus.planner.classes.TCMap
- mLogger - Variable in class edu.isi.pegasus.planner.client.Executable
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
The handle to the logger object.
- mLogger - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The handle to the LogManager that logs all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The handle to the logger object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
A handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The logger object
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
The handle to pegasus logger used for run.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.code.generator.Stork
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The logger to use.
- mLogger - Variable in class edu.isi.pegasus.planner.common.UserOptions
-
The Logger object used to log the messages.
- mLogger - Static variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mLogger - Variable in class edu.isi.pegasus.planner.dax.ADAG
- mLogger - Variable in class edu.isi.pegasus.planner.dax.CatalogType
- mLogger - Variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The LogManager object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The handle to the logger
- mLogger - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.Parser
-
The LogManager object which logs the Pegasus messages.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
The transformation to the logger used to log messages.
- mLogger - Variable in class edu.isi.pegasus.planner.parser.XMLErrorHandler
-
The handle to the logging object that is used to log the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.Label
-
The handle to the Logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The handle to the internal logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The handle to the logger object.
- mLogger - Variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
The instance to the Logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.Authenticate
-
The handle to the LogManager object.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The handle to the logging object used for logging.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
The handle to the logging object, that is used to log the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The logging object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The handle to the logger object.
- mLogger - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The handle to the LogManager object.
- mLogger - Variable in class edu.isi.pegasus.planner.selector.replica.Default
-
The handle to the logging object that is used to log the various debug messages.
- mLogger - Variable in class edu.isi.pegasus.planner.selector.replica.Local
-
The handle to the logging object that is used to log the various debug messages.
- mLogger - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The handle to the LogManager
- mLogger - Variable in class edu.isi.pegasus.planner.selector.TransformationSelector
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The logging object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The logging object which is used to log all the messages.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
The handle to the logger.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The handle to the logging object.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
The handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the logging manager.
- mLogger - Variable in class edu.isi.pegasus.planner.transfer.TPT
-
The handle to the logging object.
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Denotes the logging level that is to be used for logging the messages.
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.SCClient
-
Denotes the logging level that is to be used for logging the messages.
- mLoggingLevel - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
Denotes the logging level that is to be used for logging the messages.
- mLogicalFile - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The logical name of the file.
- mLogicalID - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The logical id of the job as identified in the dax.
- mLogicalName - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The logical name of the node as identified in the dax.
- mLogMsg - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The String holding the log message.
- mLogMsg - Variable in class edu.isi.pegasus.planner.classes.Data
-
The String which stores the message to be stored.
- mLogMsg - Variable in class edu.isi.pegasus.planner.client.Executable
-
The error message to be logged.
- mLogMsg - Variable in class edu.isi.pegasus.planner.parser.Parser
-
The String which contains the messages to be logged.
- mLogMsg - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
Contains the message which is to be logged by Pegasus.
- mLogMsg - Variable in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
The string holding the logging messages
- mLogMsg - Variable in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
The string holding the logging messages
- mLogProgress - Variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Flag to indicate whether to log progress or not.
- mLookAhead - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Stores the look-ahead symbol.
- mLookAhead - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Captures the look-ahead character.
- mLRCList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The list of
LRC
objects that contain the information about the various LRCs associated with the remote site. - mLRCURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
The contact string to the lrc e.g rls://sukhna.isi.edu .
- mMajorVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
This variable defines the major version number.
- mMajorVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Stores the major version of the planner.
- mMask - Variable in class edu.isi.pegasus.common.logging.logger.Default
-
The mask that needs to be deployed to determine what messages are to be logged.
- mMaxCount - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The maximum number of jobs that can be running on the remote site.
- mMaxCPUTime - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The max walltime of the jobs that are run on the remote site.
- mMaxDepth - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The max depth of any job in the workflow useful for a priorityQueue implementation in an array
- mMDAGPropertiesFile - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The path to the properties file that is written out and shared by all partitions in the mega DAG.
- mMegadag - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The megadag generation mode.
- mMegaDAG - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The abstract dag object that ends up holding the megadag.
- mMessage - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
The current log event message.
- mMetadata - Variable in class edu.isi.pegasus.planner.dax.CatalogType
- mMetadata - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
The metadata of the workflow.
- mMetadata - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
The Metadata object that has to be returned.
- mMetrics - Variable in class edu.isi.pegasus.planner.code.generator.SendMetrics
- mMetricsFileInSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
- mMetricsServers - Variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The List of URLS for the metrics servers to report to.
- mMinorVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
This variable defines the minor version number.
- mMinorVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Stores the major version of the planner.
- mMountPoint - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The mount point for the server.
- mMountPoint - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
The mount point for the file system.
- mName - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The logical mName of the transformation.
- mName - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
The name of the tranformation.
- mName - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mName - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The Name / Label of the DAX
- mName - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Name of the executable
- mName - Variable in class edu.isi.pegasus.planner.dax.File
-
The logical name of the file.
- mName - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
Name of the transformation
- mName - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The name of the partition.
- mName - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The name assigned to the pdax file being written.
- mName - Variable in class edu.isi.pegasus.planner.ranking.Ranking
-
The name of the DAX.
- mName - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site
-
The logical name assigned to the site.
- mNameOfADag - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The name of the Abstract Dag taken from the adag element of the DAX generated by the Abstract Planner.
- mNamepsaceToPropertiesPrefix - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- mNamespace - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mNamespace - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The logical mNamespace of the transformation
- mNamespace - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
The namespace of the compound transformation.
- mNamespace - Variable in class edu.isi.pegasus.planner.classes.Profile
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Namespace of the executable
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.File
-
The namespace on a file.
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.Profile
-
Namespace of the profile
- mNamespace - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
Namespace of the Transformation
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.ENV
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Globus
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Hints
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Selector
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.namespace.Stat
-
The name of the implementing namespace.
- mNamespace - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
For holding the namespace if specified in the Profile Element.
- mNewLine - Variable in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
The new line character to be used
- mNext - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
The index of the job to which the next transfer for the pool would be scheduled.
- mNext - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The index of the job to which the next transfer for the pool would be scheduled.
- mNext - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The index of the bundle to which the next transfer for the site would be added to.
- mNMIArchToVDSArchMap - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
The map storing architecture to corresponding NMI architecture platforms.
- mNMIOSToVDSOSMap - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
The map storing OS to corresponding NMI OS platforms.
- mNode - Variable in class edu.isi.pegasus.planner.refiner.cleanup.CleanupJobContent
-
The graph cleanupNode object for the associated job whose files are being deleted.
- mNodeCollapser - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the node collapser.
- mNodeComparator - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
A static instance of GraphNode comparator.
- mNodeIdPattern - Static variable in class edu.isi.pegasus.planner.dax.Patterns
- mNodeLabel - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mNodeList - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The list of
GraphNode
objects corresponding to the nodes making the partiition.
- mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The set of job id's in the partition.
- mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
The set of node id's in the partition.
- mNodeSet - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The set of job id's in the partition.
- mNoGridStartImpl - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Handle to NoGridStart implementation.
- mNonStandardJavaOptions - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The set of non standard java options that need to be passed to the JVM
- mNonTPTSite - Variable in class edu.isi.pegasus.planner.classes.TransferJob
-
The site at which the transfer jobs would have run, had it been running in a peer 2 peer transfer mode (non third party mode).
- mNotifications - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
All the notifications associated with the job
- mNotifications - Variable in class edu.isi.pegasus.planner.classes.ADag
-
All the notifications associated with the job
- mNotifications - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
All the notifications associated with the job
- mNotifications - Variable in class edu.isi.pegasus.planner.classes.Job
-
All the notifications associated with the job
- mNotifications - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
All the notifications associated with the adag
- mNotificationsWriter - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The handle to the PrintWriter that writes out the notifications file
- mNumberOfExistingLFNS - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
- mNumChmodJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
- mNumCleanupJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of cleanup jobs.
- mNumClusteredJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of clustered compute jobs.
- mNumComputeJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of compute jobs.
- mNumComputeTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of compute tasks in the DAX
- mNumCreateDirJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of create dir jobs.
- mNumDAGJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of DAG jobs in the workflow
- mNumDAGTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of DAG tasks in the DAX.
- mNumDAXJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of dax jobs in the workflow
- mNumDAXTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of DAX tasks in the DAX
- mNumFormatter - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The number formatter to format the run submit dir entries.
- mNumFormatter - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The number formatter to format the run submit dir entries.
- mNumFormatter - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The number formatter to format the run submit dir entries.
- mNumFormatter - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The number formatter to format the run submit dir entries.
- mNumInterTxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of inter-site transfer jobs.
- mNumOfJobs - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The number of jobs that are in the partition.
- mNumOfJobs - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The number of jobs that are in the partition.
- mNumOfPools - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The number of pools that one has to authenticate against.
- mNumOfRescueTries - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The numer of rescue's to try before replanning.
- mNumOfTXProcesses - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The number of g-u-c processes that are spawned to transfer the files in one transfer job.
- mNumOfTXStreams - Variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The number of streams that each g-u-c process opens to do the ftp transfer.
- mNumOfTXStreams - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The number of streams that each g-u-c process opens to do the ftp transfer.
- mNumProcessors - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site
-
The number of processors making up a site.
- mNumRegJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of registration jobs.
- mNumSITxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of stage in transfer jobs.
- mNumSOTxJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The number of stage-out transfer jobs.
- mNumTotalJobs - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The total number of jobs in the executable workflow.
- mNumTotalTasks - Variable in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The total number of tasks in the executable workflow.
- mObject - Variable in class edu.isi.pegasus.planner.parser.ParserStackElement
- MODIFY_FOR_FILE_URLS_KEY - Static variable in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Property specify whether to modify file url or not.
- modifyFileURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Boolean indicating whether to modify the file URL or not
- modifyFileURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Boolean indicating whether to modify the file URL or not
- modifyForFileURLS(TransformationCatalogEntry) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract
-
Modifies a Transformation Catalog Entry to handle file URL's.
- modifyForFileURLS(String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.impl.Abstract
-
Modifies a Transformation Catalog Entry to handle file URL's.
- modifyJobForFirstLevelStaging(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Modifies a job for the first level staging to headnode.This is to add any files that needs to be staged to the head node for a job specific to the SLS implementation.
- modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Modifies a compute job for second level staging.
- modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Modifies a compute job for second level staging.
- modifyJobForWorkerNodeExecution(Job, String, String, String) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Modifies a compute job for second level staging.
- modifyURL - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Boolean indicating whether to modify the file URL or not
- MONITORD_COMMENT_MARKER - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The marker to designate a line in the input file reserved for monitord purposes.
- MonitordNotify - Class in edu.isi.pegasus.planner.code.generator
-
A MonitordNotify Input File Generator that generates the input file required for pegasus-monitord.
- MonitordNotify() - Constructor for class edu.isi.pegasus.planner.code.generator.MonitordNotify
- mOperation - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The operations supported by the file server
- mOPStream - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The output stream to which the contents have to be redirected to.
- mOptArg - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Designates if the optional argument to the random directory was given.
- mOptional - Variable in class edu.isi.pegasus.planner.dax.File
-
Is the file optional
- mOrder - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
The number of nodes in the graph.
- mOriginalArgumentString - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The argument string with which the planner was invoked.
- mOriginalDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The Original Dag object which is constructed by parsing the dag file.
- mOs - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Os the executable is compiled for
- mOS - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The Operating System.
- mOS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
An optional os type for the grid gateway.
- mOsRelease - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Os release the executable is compiled for
- mOSRelease - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The Operating System Release.
- mOSRelease - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Optional information about the os release.
- mOSToNMIOSReleaseAndVersion - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The map storing OS to corresponding NMI OS platforms.
- mOSType - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The operating system type type of the remote machines to which the jobmanager talks to.
- mOsVersion - Variable in class edu.isi.pegasus.planner.dax.Executable
-
OS version the executable is compiled for
- mOSVersion - Variable in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The Operating System Version.
- mOSVersion - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Optional information about the version.
- mOutputDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
the output directory
- mOutputDir - Variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The output directory where to generate the ploticus output.
- mOutputFile - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The output file that lists the daxes in sorted order.
- mOutputFile - Variable in class edu.isi.pegasus.planner.client.SCClient
-
The output file that is written out.
- mOutputFile - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The output file that is written out.
- mOutputFormat - Variable in class edu.isi.pegasus.planner.client.SCClient
-
The output format for the site catalog.
- mOutputFormat - Variable in class edu.isi.pegasus.planner.client.TCConverter
-
The output format for the transformation catalog.
- mOutputMapper - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Handle to an OutputMapper that tells what
- mOutputPool - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The output pool on which the data products are needed to be transferred to.
- mOutputPool - Static variable in class edu.isi.pegasus.planner.refiner.Engine
-
The pool on which all the output data should be transferred.
- mOutputSite - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The output site where files need to be staged to.
- mOutputSite - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
The output site where the data needs to be placed.
- mOutputSite - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
The output site where the data needs to be placed.
- mOutputSite - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
The output site where the data needs to be placed.
- mOutStream - Variable in class edu.isi.pegasus.common.logging.logger.Default
-
The stream to which one writes.
- moveLeft(LinkedList[], int, long) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
Redistribute this task to the earlier time.
- moveRight(LinkedList[], int, long) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
Redistribute this task to the later time.
- mParent - Variable in class edu.isi.pegasus.planner.dax.Edge
-
The parent of the parent
- mParents - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The list of parents of a node referred to by mCurrentChildId.
- mParents - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
List of parents for a child node in the graph
- mParents - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
List of parents for a particular child.
- mParents - Variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The list of parents of the job/node in the abstract graph.
- mParentsMap - Variable in class edu.isi.pegasus.planner.partitioner.Partition
-
A map containing a node and it's parents ids in the partition.
- mParser - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
The handle to parser instance that will parse the site catalog.
- mParser - Variable in class edu.isi.pegasus.planner.parser.Parser
-
The object which is used to parse the dax.
- mParsingDone - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
A boolean indicating that parsing is done.
- mParsingDone - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
A boolean indicating that parsing is done.
- mPartADAG - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The ADAG object containing the partitioned dax.
- mPartADAG - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
The ADAG object containing the partitioned dax.
- mPartition - Variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The object holding the contents of one partition as indicated in the pdax.
- mPartition - Variable in class edu.isi.pegasus.planner.partitioner.Topological
-
The partition that has to be sorted.
- mPartitionClusterMap - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
A Map that indexes the partition ID to the clustered job.
- mPartitionerTable - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The table that maps clustering technique to a partitioner.
- mPartitionID - Variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
The value for the partition key.
- mPartitioningStarted - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
A boolean indicating that the partitioning has started.
- mPartitioningType - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Stores the type of partitioning to be done.
- mPartitionMap - Variable in class edu.isi.pegasus.planner.partitioner.Horizontal
-
A map indexed by the partition ID.
- mPartitionMap - Variable in class edu.isi.pegasus.planner.partitioner.Label
-
A map indexed by the label.
- mPartitionName - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The name of the partition dax that are generated.
- mPassword - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the MySQL password
- mPatchVersion - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
This variable defines the patch version number.
- mPatchVersionLevel - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Stores the major version of the planner.
- mPath - Variable in class edu.isi.pegasus.common.util.PegasusURL
-
The path referred to by the PegasusURL
- mPattern - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Static variable in class edu.isi.pegasus.common.util.PegasusURL
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Variable in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Static variable in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Stores compiled patterns at first use, quasi-Singleton.
- mPattern - Variable in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
The compiled regex expression
- mPBS - Variable in class edu.isi.pegasus.planner.code.generator.PMC
-
Handle to the PBS Code generator.
- mPDAX - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The path to the PDAX file written out.
- mPDAXDirectory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The directory in which the daxes corresponding to the partitions are kept.
- mPDAXDirectory - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The directory in which the daxes corresponding to the partition are generated.
- mPDAXFile - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The path to the pdax file that contains the partition graph.
- mPDAXWriter - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The handle to the partition graph writer.
- mPegasusHome - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The value of the PEGASUS_HOME environment variable.
- mPegasusLiteEnabled - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
A boolean indicating whether pegasus lite mode is picked up or not.
- mPegasusLiteLocalWrapper - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Path to Pegasus Lite local wrapper script.
- mPegasusPlanOptions - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The object containing all the options passed to the Concrete Planner.
- mPegasusProfilesInProperties - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Pegasus Profiles specified in the properties.
- mPegasusProfilesInProperties - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Pegasus Profiles specified in the properties.
- mPFN - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The physical path on the resource for a particular arch, os and type.
- mPFNList - Variable in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
A list of
ReplicaCatalogEntry
objects containing the PFN's and associated attributes. - mPFNs - Variable in class edu.isi.pegasus.planner.dax.CatalogType
- MPI_EXEC_CLASS - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
-
The name of the class in this package, that corresponds to mpiexec.
- MPIExec - Class in edu.isi.pegasus.planner.cluster.aggregator
-
This class aggregates the smaller jobs in a manner such that they are launched at remote end, by mpiexec on n nodes where n is the nodecount associated with the aggregated job that is being lauched by mpiexec.
- MPIExec() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
The default constructor.
- mPlannerCache - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The transient replica catalog that tracks the files created or transferred during the workflow
- mPlannerCache - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Handle to the transient replica catalog.
- mPlannerCache - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A SimpleFile Replica Catalog, that tracks all the files that are being materialized as part of workflow executaion.
- mPlannerCache - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
A SimpleFile Replica Catalog, that tracks all the files that are being materialized as part of workflow execution.
- mPlannerCache - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
A SimpleFile Replica Catalog, that tracks all the files that are being materialized as part of workflow execution.
- mPlannerOptions - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
- mPlannerOptions - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The options to be passed ahead to pegasus plan.
- mPlannerOptions - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The planner options passed to the planner
- mPlannerOpts - Variable in class edu.isi.pegasus.planner.common.UserOptions
-
The object containing all the user options.
- mPMetrics - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The planner metrics to use.
- mPMetrics - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The PlannerMetrics object storing the metrics about this planning instance.
- mPool - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
The pool id at of the pool which the resource is .
- mPool - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
The pool against which to authenticate.
- mPool - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
The staging site for which these transfers are grouped.
- mPool - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The remote pool for which these transfers are grouped.
- mPoolClass - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Specifies the implementing class for the pool interface.
- mPoolConfig - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
Handle to the PoolConfig object
- mPoolFile - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The path to the file containing the pool information.
- mPoolHandle - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The internal singleton handle.
- mPoolHandle - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
- mPoolHandle - Variable in class edu.isi.pegasus.planner.refiner.Authenticate
-
The handle to the Pool Info Provider.
- mPoolHandle - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The handle to the Pool Info Provider.
- mPoolProvider - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The path to the pool information provider.
- mPOptions - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The options passed to the planner.
- mPOptions - Variable in class edu.isi.pegasus.planner.classes.PlannerCache
-
The planner options
- mPOptions - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The object containing all the options passed to the Concrete Planner.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The object containing the command line options specified to the planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The object containing the command line options specified to the planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The object containing the command line options specified to the planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The object containing the command line options specified to the planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The object containing the command line options specified to the planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The options passed to the planner.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The options passed to the planner.
- mPOptions - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The options passed to the planner.
- mPOptions - Static variable in class edu.isi.pegasus.planner.common.UserOptions
-
The object holding the Singleton instance.
- mPOptions - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The object containing the options that were given to the concrete planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
Contains the various options to the Planner as passed by the user at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The options passed to the planner at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Contains the various options to the Planner as passed by the user at runtime.
- mPOptions - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
The handle to the planner options.
- mPort - Variable in class edu.isi.pegasus.planner.refiner.Authenticate.HostPort
-
The port at which the server is running.
- mPosition - Variable in exception edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParserException
-
Remembers the position that cause the exception to be thrown.
- mPOSTScriptImplementationTable - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
A table that maps short names of
POSTScript
implementations with the implementations themselves. - mPOSTScriptPath - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The path to the user postscript on the submit host.
- mPOSTScriptPath - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The path to the user postscript on the submit host.
- mPostScriptProperties - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The path to the properties file created in submit directory.
- mPostScriptProperties - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The properties that need to be passed to the postscript invocation on the command line in the java format.
- mPPS - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The handle to the provenance store implementation.
- mPPS - Variable in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
The handle to the provenance store implementation.
- mPPS - Variable in class edu.isi.pegasus.planner.transfer.refiner.Empty
-
The handle to the provenance store implementation.
- mPreferredSitesMap - Variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
A Map indexed by site handles, that contains a set of site handles.
- mPreviousToken - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Captures the previous token.
- mPriority - Variable in class edu.isi.pegasus.planner.classes.FileTransfer
-
A priority associated with the FileTransfer
- mProcessors - Variable in class edu.isi.pegasus.planner.selector.site.heft.Site
-
A list of processors making up the site.
- mProfileKey - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
For holding the key attribute in profile tag.
- mProfileKey - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.BundleValue
-
The pegasus profile key to use for lookup
- mProfileKey - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.BundleValue
-
The pegasus profile key to use for lookup
- mProfileList - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The list of
Profile
objects that contain the profile information associated with the remote site. - mProfileMap - Variable in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
An enum map that associates the enum keys with the corresponding namespace objects.
- mProfileMap - Variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The Map object that contains the profiles for a particular namespace.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The profiles associated with the FileSystem.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
The profiles associated with the headnode filesystem.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The profiles asscociated with the site.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The profiles asscociated with the site.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
The profiles associated with the headnode filesystem.
- mProfiles - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The profiles associated with the site.
- mProfiles - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
Profiles that are specified in the properties
- mProfiles - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mProfiles - Variable in class edu.isi.pegasus.planner.dax.CatalogType
- mProfiles - Variable in class edu.isi.pegasus.planner.dax.PFN
- mProfileTag - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Set as and when Profile and Argument tags are started and ended.
- mProgram - Variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
The name of the program.
- mProgram - Variable in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
The name of the program.
- mProgram - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The name of the program.
- mPrompt - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
The prompt that is to be written to the output stream.
- mProperties - Variable in class edu.isi.pegasus.common.logging.logger.Log4j
-
The properties passed at runtime
- mProperties - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The properties container for properties specified on the commandline in the DAX dax elements.
- mPropertiesFilename - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
- mPropertiesPath - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The pointer to the properties file that was used.
- mPropertyTable - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
An internal table that maps remote transfer type to the corresponding property.
- mPropertyTable - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
An internal table that maps third party transfer type to the corresponding property.
- mProps - Variable in class edu.isi.pegasus.common.credential.impl.Abstract
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Handle to Pegasus Properties
- mProps - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the
PegasusProperties
. - mProps - Variable in class edu.isi.pegasus.planner.classes.PlannerCache
-
The PegasusProperties
- mProps - Variable in class edu.isi.pegasus.planner.client.Executable
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
The handle to the properties object holding all the properties.
- mProps - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
The handle to the properties object holding all the properties.
- mProps - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The handle to the properties object holding all the properties.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The handle to Pegasus Properties.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The properties object holding all the properties.
- mProps - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The object holding all the properties pertaining to the VDS system.
- mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.parser.Parser
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The handle to the properties file.
- mProps - Variable in class edu.isi.pegasus.planner.partitioner.ClustererCallback
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Handle to the properties available.
- mProps - Variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
The properties passed to the client.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.Authenticate
-
The handle to the PegasusProperties object.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The handle to the properties passed to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The handle to the properties passed to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The handle to the properties passed to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The handle to the pegasus properties.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The object holding all the properties pertaining to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The handle to the properties object.
- mProps - Variable in class edu.isi.pegasus.planner.selector.replica.Default
-
The properties object containing the properties passed to the planner.
- mProps - Variable in class edu.isi.pegasus.planner.selector.replica.Local
-
The properties object containing the properties passed to the planner.
- mProps - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The properties passed to Pegasus at runtime.
- mProps - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The handle to the properties.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The handle to the properties object holding the properties relevant to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The handle to the properties object holding the properties relevant to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The handle to the properties object holding the properties relevant to Pegasus.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
The handle to the properties.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the properties.
- mProps - Variable in class edu.isi.pegasus.planner.transfer.TPT
-
The handle to the properties object holding the properties relevant to Pegasus.
- mPropsInSubmitDir - Variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The pointer to the properties file that is written out in the submit directory.
- mProtocol - Variable in class edu.isi.pegasus.common.util.PegasusURL
-
The protocol referred to by the PegasusURL
- mProtocol - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The protocol used by the file server.
- mPutOperations - Static variable in enum edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
- mPutRCCache - Variable in class edu.isi.pegasus.planner.classes.PlannerCache
-
The cache storing the PUT urls for the files in the workflow
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.BFS
-
The first in first out queue, that manages the set of gray vertices in a breadth first search.
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.BottomUpIterator
-
The first in first out queue, that manages the set of gray vertices in a breadth first search.
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
The first in first out queue, that manages the set of gray vertices in a breadth first search.
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
The internal list of nodes that contains the nodes to be traversed.
- mQueue - Variable in class edu.isi.pegasus.planner.partitioner.Label
-
The first in first out queue, that manages the set of gray vertices in a breadth first search.
- mQueue - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The request queue that holds the authenticate requests.
- mRandom - Static variable in class edu.isi.pegasus.planner.common.PegRandom
-
The object containing the instance of the java.util.Random class.
- mRandomDirName - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
If the genRandomDir flag is set, then this contains the name of the random directory.
- mRank - Variable in class edu.isi.pegasus.planner.ranking.Ranking
-
Rank of the dax.
- mRank - Variable in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
The rank value.
- MRC - Class in edu.isi.pegasus.planner.catalog.replica.impl
-
A multiple replica catalog implementation that allows users to query different multiple catalogs at the same time.
- MRC() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The default constructor.
- mRCB - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The handle to the replica catalog bridge.
- mRCB - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The handle to the replica catalog bridge.
- mRCBridge - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The bridge to the Replica Catalog.
- mRCBridge - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The bridge to the Replica Catalog.
- mRCCatalog - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
- mRCDown - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
A boolean variable to desingnate whether the RLI queried was down or not.
- mRCHandle - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the replica catalog.
- mRCList - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The list of replica catalogs that need to be queried for.
- mReadOnly - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
A boolean indicating whether the catalog is read only or not.
- mRedEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the Reduction Engine that performs reduction on the graph.
- mReducedDag - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The reduced Dag object which is got from the Reduction Engine.
- mRefiner - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The handle to the refiner that loaded this implementation.
- mRegexExpression - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
Store the regular expressions necessary to parse the output of condor_version.
- mRegexExpression - Static variable in class edu.isi.pegasus.common.util.PegasusURL
-
Stores the regular expressions necessary to parse a PegasusURL into 3 components protocol, host and path
- mRegexExpression - Variable in class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
-
Store the regular expressions necessary to parse kickstart output files
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Store the regular expressions necessary to match the * properties.
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
-
Store the regular expressions necessary to parse kickstart output files
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter
-
Store the regular expressions necessary to parse kickstart output files
- mRegexExpression - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Store the regular expressions necessary to parse the basename from the worker package url to retrieve the version of pegasus.
- mRegFiles - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
The collection of
FileTransfer
objects containing the files that need to be registered. - mRegFiles - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The collection of
FileTransfer
objects containing the files that need to be registered. - mRegister - Variable in class edu.isi.pegasus.planner.dax.File
-
Should the file be registered in the replica catalog
- mRegName - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
The name of the registration job.
- mRegName - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The name of the registration job.
- mRelationsMap - Variable in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
A map containing the relations between the jobs making up the partition.
- mRelationsMap - Variable in class edu.isi.pegasus.planner.partitioner.SingleLook
-
A map containing the relations between the jobs making up the partition.
- mRelationsMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Basic
-
The map indexed by a node name, where the associated value is the set of child nodes.
- mRelationsParentMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The map indexed by compute jobnames that contains the list of stagin job names that are being added during the traversal of the workflow.
- mRelationsParentMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The map indexed by compute jobnames that contains the list of stagin job names that are being added during the traversal of the workflow.
- mRelativeDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The relative directory for the submit directory and remote execution directory
- mRelativeSubmitDir - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The relative directory for the submit directory.
- mRelativeSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The relative submit directory for this run.
- mReleaseVersion - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
Identifies the release version of the VDS software that was used to generate the workflow.
- mRemoteTransfers - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The handle to the Remote Transfers State machinery.
- mRemoveEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The engine that ends up creating the cleanup dag for the dag.
- mReplacementTable - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
Replacement table, that identifies the corresponding fat job for a job.
- mReplicaCatalog - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The handle to the main Replica Catalog.
- mReplicaCatalogs - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The list of replica catalog associated with the site.
- mReplicaCatalogs - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The list of replica catalog associated with the site.
- mReplicaSelector - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The handle to the replica selector that is to used to select the various replicas.
- mReplicaStore - Variable in class edu.isi.pegasus.planner.classes.ADag
-
Handle to the replica store that stores the replica catalog user specifies in the DAX
- mReplicaStore - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Handle to the replica store that stores the replica catalog user specifies in the DAX
- mReplicaStore - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The replica store in which we store all the results that are queried from the main replica catalog.
- mRequestID - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The optional request ID associated with the DAX.
- mRequestID - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The request id to get the daxes.
- mRequestID - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The optional request id.
- mRequestID - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The request id associated with the DAX.
- mResMap - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The mapping to siteHandle to all the jobs that are mapped to it mapping to siteHandle(String) to Set
- mResMapLeaves - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The mapping of siteHandle to all subset of the jobs mapped to it that are leaves in the workflow mapping to siteHandle(String) to Set
. - mResMapRoots - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
The mapping of siteHandle to all subset of the jobs mapped to it that are roots in the workflow mapping to siteHandle(String) to Set
. - mResourceContact - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
The contact string to the resource.
- mResourceID - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The Id of the resource on which the transformation is installed.
- mResponseCode - Variable in class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- mResponseMessage - Variable in class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- mResult - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
The final result constructed.
- mResult - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
The final result constructed.
- mRLIUrl - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The Replica Location Index URL got from vds.rls.url property
- mRoot - Static variable in class edu.isi.pegasus.common.logging.logger.Log4j
-
Keeps track of log4j's root logger as singleton.
- mRoot - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
The root node for the graph that is constructed.
- mRoot - Variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The root node of the graph from where to start the BFS.
- mRootWorkflowUUID - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The Root Workflow UUID.
- mRootWorkflowUUID - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The Root Workflow UUID.
- mRunningJobs - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The number of jobs in the remote queue that are running at the remote site.
- mRuntime - Variable in class edu.isi.pegasus.planner.classes.Job
-
The expected runtime for a job.
- mRuntime - Variable in class edu.isi.pegasus.planner.ranking.Ranking
-
The runtime of the dax in seconds.
- mSanitizePath - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A boolean storing whether to sanitize paths or not
- mScanner - Variable in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
The access to the lexical scanner is stored here.
- mSCFile - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
- mScheduledDAG - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
ADag object containing the jobs that have been scheduled by the site selector.
- mScheduledDAG - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
ADag object containing the jobs that have been scheduled by the site selector.
- mScheduledSite - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The site where a job is scheduled to run.
- mScheduler - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The scheduler type with which it interfaces.
- mScratch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
The scratch area on the head node.
- mScratch - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
The scratch area on the head node.
- mSearchFiles - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The Vector of
String
objects containing the logical filenames of the files whose locations are to be searched in the Replica Catalog. - mSelector - Variable in class edu.isi.pegasus.planner.selector.site.Group
-
The handle to the internal site selector that is used to schedule jobs amongst the groups.
- mSendMetrics - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
A boolean indicating whether metrics should be sent to metrics server or not
- mSendMetricsToServer - Variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
boolean indicating whether to log metrics or not
- mSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The nice separator, define once, use often.
- mSeparator - Static variable in interface edu.isi.pegasus.planner.code.GridStart
-
The File separator to be used on the submit host.
- mSeparator - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The file Separator to be used on the submit host.
- mSeqExecGridStartUsed - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Boolean to track whether the gridstart used in PegasusLite or not
- mSetupForCondorIO - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A boolean to track whether condor file io is used for the workflow or not.
- mSetupMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The map indexed by staged executable logical name.
- mSetupMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The map indexed by staged executable logical name.
- mSetupTransferImplementation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The transfer implementation to be used for staging in the data as part of setup job.
- mSetXBit - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Whether kickstart should set the X Bit on the staged executables.
- MSG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- MSG_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- mSharedDirectory - Variable in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
The shared directory on the node.
- mShiwaBundle - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
the path to the shiwa bundle
- mShutdown - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
Whether to shutdown or not.
- mSIBundleMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
The map containing the stage in bundle values indexed by the name of the site.
- mSingletonInstance - Static variable in class edu.isi.pegasus.common.logging.LogFormatterFactory
-
Holds a singleton instance that is populated via the loadSingletonInstance() method.
- mSingletonInstance - Static variable in class edu.isi.pegasus.common.logging.LogManagerFactory
-
Holds a singleton instance that is populated via the loadSingletonInstance() method.
- mSite - Variable in class edu.isi.pegasus.planner.dax.PFN
- mSite - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The site for which these transfers are grouped.
- mSiteCatalog - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
The map indexed by the site handle.
- mSiteHandle - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
The site handle to use.
- mSiteLFNAddOnMap - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
A Map that tracks for each output site, the LFN to the Add on's
- mSiteMap - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Map containing the number of free nodes for each site.
- mSites - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The list of grid sites where the daxes can run.
- mSites - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
The set of sites that need to be parsed.
- mSites - Variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
The set of sites that need to be parsed.
- mSites - Variable in class edu.isi.pegasus.planner.ranking.Rank
-
The list of candidate grid sites.
- mSites - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The list of sites where the workflow can run.
- mSiteSelector - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Handle to the site selector.
- mSiteSelectorPath - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The path to the site selector.
- mSiteStore - Variable in class edu.isi.pegasus.common.credential.impl.Abstract
-
The handle to the Site Catalog Store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The SiteStore object where information about the sites is stored.
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Stores sites in memory
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Stores sites in memory
- mSiteStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
The handle to the RIC.
- mSiteStore - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The site store containing the sites that need to be used.
- mSiteStore - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Handle to the site catalog store
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The handle to the site catalog store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.condor.style.Abstract
-
The handle to the Site Catalog Store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
Handle to the Site Store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Handle to the site catalog store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Handle to the site catalog store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Handle to the site catalog store.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
Handle to the stagingSite catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
Handle to the site catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
The Site Store handle.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The handle to the SiteStore.
- mSiteStore - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The handle to the Pool Info Provider.
- mSiteStore - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The handle to the site catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Handle to the site catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The handle to the Pool Info Provider.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
Handle to the Site Catalog contents.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
Handle to the Site Catalog contents.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
Handle to the Site Catalog contents.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Handle to the SiteStore
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Handle to the SiteStore
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
The handle to the Site Catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.sls.Condor
-
The handle to the site catalog.
- mSiteStore - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the site catalog.
- mSiteToPegasusHomeMap - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Maps a site to the the directory where the pegasus worker package has been untarred during workflow execution.
- mSize - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The size of the file.
- mSize - Variable in class edu.isi.pegasus.planner.dax.File
-
File size of the file no units required
- mSize - Variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
The initial size of the buffer.
- mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The handle to the SLS implementor
- mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The handle to the SLS implementor
- mSLS - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The handle to the SLS implementor
- mSLS - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The handle to the SLS implementor
- mSortedRegexSet - Variable in class edu.isi.pegasus.planner.selector.replica.Regex
-
The Set of regular expressions that orders the regex expressions to use in ascending order.
- mSource - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
-
The default source to query for generating a site catalog.
- mSourceMap - Variable in class edu.isi.pegasus.planner.classes.FileTransfer
-
The map containing all the source urls keyed by the pool id/name.
- mSRMServiceURLToMountPointMap - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A map that associates the site name with the SRM server url and mount point.
- mStack - Variable in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
The Stack of event objects maintained internally
- mStack - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mStack - Variable in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
The stack of objects kept around.
- mStageinLocalBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The BundleValue that evaluates for local stage in jobs.
- mStageinLocalBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The BundleValue that evaluates for local stage in jobs.
- mStageInLocalMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The map containing the list of stage in transfer jobs that are being created for the workflow indexed by the execution poolname.
- mStageInLocalMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The map containing the list of stage in transfer jobs that are being created for the workflow indexed by the execution poolname.
- mStageInLocalMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
A map indexed by site name, that contains the pointer to the stage in PoolTransfer objects for that site.
- mStageInMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Chain
-
A map indexed by execution sites.
- mStageInRemoteBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The BundleValue that evaluates for remote stage-in jobs.
- mStageInRemoteBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The BundleValue that evaluates for remote stage-in jobs.
- mStageInRemoteMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The map containing the list of stage in transfer jobs that are being created for the workflow indexed by the execution poolname.
- mStageInRemoteMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The map containing the list of stage in transfer jobs that are being created for the workflow indexed by the execution poolname.
- mStageInRemoteMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
A map indexed by site name, that contains the pointer to the symlink stage in PoolTransfer objects for that site.
- mStageoutDirectory - Variable in class edu.isi.pegasus.planner.transfer.mapper.impl.AbstractFileFactoryBasedMapper
-
The stage out directory where the outputs are staged to.
- mStageOutLocalBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The BundleValue that evaluates for local stage out jobs.
- mStageOutLocalBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The BundleValue that evaluates for local stage out jobs.
- mStageOutLocalMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
A map indexed by site name, that contains the pointer to the local stage out PoolTransfer objects for that site.
- mStageOutLocalMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
A map indexed by site name, that contains the pointer to the local stage out PoolTransfer objects for that site.
- mStageOutRemoteBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
The BundleValue that evaluates for remote stage out jobs.
- mStageOutRemoteBundleValue - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
The BundleValue that evaluates for remote stage out jobs.
- mStageOutRemoteMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
A map indexed by site name, that contains the pointer to the remote stage out PoolTransfer objects for that site.
- mStageOutRemoteMapPerLevel - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
A map indexed by site name, that contains the pointer to the remote stage out PoolTransfer objects for that site.
- mStageSLSFile - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Boolean to track whether to stage sls file or not
- mStageSLSFile - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Boolean to track whether to stage sls file or not
- mStagingSite - Variable in class edu.isi.pegasus.planner.classes.Job
-
The staging site associated with the job
- mStagingSitesMap - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A map that maps an execution site to a staging site.
- mStarReplacements - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Replacement 2 D Array for the above properties.
- mStart - Variable in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The start time when start message for the event was generated
- mStarted - Variable in class edu.isi.pegasus.common.util.StreamGobbler
-
A boolean indicating whether the thread has started or not.
- mStartSeparator - Static variable in class edu.isi.pegasus.planner.code.generator.Stork
-
The nice start separator, define once, use often.
- mStartTime - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The start time for the planning.
- mStartTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The estimated start time for a job.
- mStartTime - Variable in class edu.isi.pegasus.planner.selector.site.heft.Processor
-
The start time of the current scheduled job.
- mState - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Stores the state as an integer.
- mState - Variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Stores the state as an integer.
- mStateMap - Variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The map indexed by site name, that contains the state for all the sites.
- mStateMap - Variable in class edu.isi.pegasus.planner.transfer.TPT
-
The map indexed by site name, that contains the state for all the sites.
- mStatements - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Maintains an essential set of prepared statement, ready to use.
- mStatements - Variable in class edu.isi.pegasus.planner.catalog.work.Database
-
Maintains an essential set of prepared statement, ready to use.
- mStatements - Variable in class edu.isi.pegasus.planner.ranking.GetDAX
-
Maintains an essential set of prepared statement, ready to use.
- mStderr - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mStdin - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mStdout - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mStorage - Variable in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
The storage area on the head node.
- mStorage - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
The storage area on the head node.
- mStorageDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The storage mount point for the grid ftp server.
- mStorageDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This contains the storage directory relative to the se mount point of the pool.
- mStore - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The internal map that maps a site catalog entry to the site handle.
- mStore - Variable in class edu.isi.pegasus.planner.classes.ReplicaStore
-
The replica store.
- mStore - Variable in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The map indexed by the id of the
GraphNode
, used for storing the nodes of the Graph. - mStore - Variable in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
The StringBuffer store.
- mStyleFactory - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Handle to the Style factory, that is used for this workflow.
- mSubInfoMap - Variable in class edu.isi.pegasus.planner.cluster.Abstract
-
A Map to store all the job(Job) objects indexed by their logical ID found in the dax.
- mSubInfoMap - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
A Map to store all the job(Job) objects indexed by their logical ID found in the dax.
- mSubmissionCredential - Variable in class edu.isi.pegasus.planner.classes.Job
-
The credential to use for job submission if required.
- mSubmit - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
If specified, then it submits to the underlying CondorG using the kickstart-Condorscript provided.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The submit exectionSiteDirectory where the submit files are being generated for the workflow.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The submit directory where the submit files are being generated for the workflow.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The submit directory where the submit files are being generated for the workflow.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The submit directory where the submit files are being generated for the workflow.
- mSubmitDir - Variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The submit directory where the submit files are being generated for the workflow.
- mSubmitDirectory - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The root of the submit directory hierarchy for the DAG.
- mSubmitDirectory - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The root of the submit directory where all the submit directories for the various partitions reside.
- mSubmitDirectory - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The submit directory where the output files have to be written.
- mSubmitDirectory - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The submit directory for the workflow.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Abstract
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The directory where all the submit files are to be generated.
- mSubmitFileDir - Variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The directory where all the submit files are to be generated.
- mSupportedOSReleaseVersions - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
A set of supported OS release and versions that our build process builds for.
- mSymbolTable - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
Singleton implementation of a symbol table for reserved words.
- mSyncJobMap - Variable in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Maps the site name to the current synch job
- mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The System Information for the Site.
- mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The System Information for the Site.
- mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The system information of the remote site.
- mSysInfo - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The System Info for the transformation.
- mTCFile - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The path to the file based TC.
- mTCFile - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
The path to the file based TC.
- mTCFile - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The path to the file containing the pool information.
- mTCFileHandle - Static variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The singleton handler to the contents of the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
The handle to the tranformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Handle to the Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The handle to the transformation catalog
- mTCHandle - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Handle to Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Handle to Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
The handle to the Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The handle to the transformation catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The handle to the Transformation Catalog.
- mTCHandle - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The handle to the transformation catalog.
- mTCMap - Variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
Handle to the TCMap
- mTCMap - Variable in class edu.isi.pegasus.planner.classes.TCMap
-
The TCMap for a dag is stored in this HashMap.
- mTCMapper - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The handle to the Transformation Mapper.
- mTCMapper - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The handle to the transformation catalog mapper object that caches the queries to the transformation catalog, and indexes them according to lfn's.
- mTCMapper - Variable in class edu.isi.pegasus.planner.selector.site.Abstract
-
The handle to the TCMapper object.
- mTCMapper - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Handle to the TCMapper.
- mTCMode - Variable in class edu.isi.pegasus.planner.refiner.Engine
-
Defines the read mode for transformation catalog.
- mTCStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
The internal store map.
- mTCStore - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
The transformation store containing the transformations after parsing the file.
- mTempLogFile - Variable in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
The name of the log file in the /tmp directory
- mTextContent - Variable in class edu.isi.pegasus.planner.parser.Parser
-
Holds the text in an element (text between start and final tags if any).
- mTextParser - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Instance to the TextParser.
- mTextString - Variable in class edu.isi.pegasus.planner.parser.Parser
-
A String that holds the contents of data passed as text.
- mThread - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
The thread object that is used to launch the thread.
- mTimeout - Variable in class edu.isi.pegasus.planner.refiner.Authenticate
-
The timeout value that is to be used in milliseconds
- mTimeout - Variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The timeout value in seconds after which to timeout, in the case where the external site selector does nothing (nothing on stdout nor stderr).
- mToBeDeletedFiles - Variable in class edu.isi.pegasus.planner.refiner.cleanup.CleanupJobContent
-
The list of files that need to be deleted and are associated with this job.
- mTopNum - Variable in class edu.isi.pegasus.planner.client.RankDAX
-
The top n workflows to execute and put in the rankings file
- mTotalMem - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The total memory that the jobmanager reports.
- mTotalNodes - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The number of total nodes
- mTotalNodes - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The total number of nodes that the jobmanager reports are on the remote site.
- mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
The total size of file system.
- mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The total storage space at the grid ftp server.
- mTotalSize - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The total space available at the file system under this directory.
- mTPT - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The handle to the Third Party State machinery.
- mTransEng - Variable in class edu.isi.pegasus.planner.refiner.MainEngine
-
The handle to the Transfer Engine that adds the transfer nodes in the graph to transfer the files from one site to another.
- mTransfer - Variable in class edu.isi.pegasus.planner.dax.File
-
Should the file be transferred on generation.
- mTransferFlag - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The transfer flag associated with the file containing tristate of transfer,dontTransfer and optional.
- mTransferFromSubmitHost - Variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Boolean indicating whether we need to transfer dirmanager from the submit host.
- mTransferType - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
The type of the transfers the job is responsible for.
- mTransferType - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The type of the transfers the job is responsible for.
- mTransferWorkerPackage - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Boolean indicating whether worker package transfer is enabled or not
- mTransferWorkerPackage - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Boolean indicating whether user wants the worker package to be transferred or not.
- mTransformations - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
The List of Transformation objects
- mTransformationStore - Variable in class edu.isi.pegasus.planner.classes.ADag
-
Handle to the transformation store that stores the transformation catalog user specifies in the DAX
- mTransformationStore - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2CDAG
-
Handle to the transformation store that stores the transformation catalog user specifies in the DAX
- mTreatCacheAsRC - Variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
A boolean indicating whether the cache file needs to be treated as a replica catalog or not.
- mTreeMap - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The Tree Map which stores the contents of the file.
- mTXContainers - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
The list of
TransferContainer
that correspond to each transfer job. - mTXContainers - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The list of
TransferContainer
that correspond to each transfer job. - mTXFERImplTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
An internal table that resolves the old transfer mode property, to the corresponding transfer implementation.
- mTXFERRefinerTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
An internal table that resolves the old transfer mode property, to the corresponding transfer refiner.
- mTXInterImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The inter transfer implementation that the refiner requires.
- mTXName - Variable in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
The name of the transfer job.
- mTXName - Variable in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The name of the transfer job.
- mTXRefiner - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The handle to the transfer refiner that adds the transfer nodes into the workflow.
- mTXSelector - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The handle to the transformation selector, that ends up selecting what transformations to pick up.
- mTXStageInImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The stage-in transfer implementation that the refiner requires.
- mTXStageOutImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The stage-out transfer implementation that the refiner requires.
- mTXSymbolicLinkImplementation - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The stage-in symbolic link transfer implementation that refiner requires.
- mType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.Directory
-
The type of directory
- mType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
The grid type associated with this instance.
- mType - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
The type of the replica catalog implementation to use.
- mType - Variable in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Specifies what type of resource you are authenticating to.
- mType - Variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The type associated with the file.
- mType - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The name of the client
- mType - Variable in class edu.isi.pegasus.planner.client.PartitionDAX
-
The type of the partitioner to be used.
- mType - Variable in class edu.isi.pegasus.planner.dax.MetaData
-
Metadata type
- MULTIPLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants for multiple read.
- MULTIPLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
- MultipleFTPerXFERJob - Interface in edu.isi.pegasus.planner.transfer
-
An empty interface, that allows for grouping of implementations that can handle multiple file transfers per transfer job like old guc and Stork.
- MultipleFTPerXFERJobRefiner - Class in edu.isi.pegasus.planner.transfer
-
The refiner interface, that determines the functions that need to be implemented to add various types of transfer nodes to the workflow.
- MultipleFTPerXFERJobRefiner(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.MultipleFTPerXFERJobRefiner
-
The overloaded constructor.
- MultipleLook - Class in edu.isi.pegasus.planner.partitioner
-
This class ends up writing a partitioned dax, that corresponds to one partition as defined by the Partitioner.
- MultipleLook(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.MultipleLook
-
The overloaded constructor.
- MultipleLook.MyCallBackHandler - Class in edu.isi.pegasus.planner.partitioner
-
The internal callback handler for the DAXParser in Euryale.
- mUniverse - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The VDS universe with which the jobmanager is associated with.
- mUpwardRank - Variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The upward rank for a node.
- mUrl - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the database url
- mURL - Variable in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
The url for the catalog.
- mURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The url string of the gridftp that contains the host and the port.
- mURL - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The url to the jobmanager on the remote site.
- mURL - Variable in class edu.isi.pegasus.planner.code.generator.SendMetrics
- mURL - Variable in class edu.isi.pegasus.planner.dax.PFN
- mURLForRegistrationOnDestination - Variable in class edu.isi.pegasus.planner.classes.FileTransfer
-
The registration URL for the file
- mURLPrefix - Variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
The URL prefix to use
- mURLPrefix - Variable in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The URL prefix for the server.
- mUseDoubleNegative - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
A boolean indicating whether to use the double negative flags for transfer and register or not.
- mUseForce - Variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Whether to use force option for the transfer executable or not.
- mUseForce - Variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Whether to use force option for the transfer executable or not.
- mUseFullPathToGridStart - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Boolean indicating whether to use full path or not
- mUseMkdir - Variable in class edu.isi.pegasus.planner.refiner.createdir.AbstractStrategy
-
Whether we want to use dirmanager or mkdir directly.
- mUseMkdir - Variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
Whether we want to use dirmanager or mkdir directly.
- mUser - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The user who planned the workflow.
- mUser - Variable in class edu.isi.pegasus.planner.client.CPlanner
-
The user name of the user running Pegasus.
- mUser - Variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The username of the user running the program.
- mUser - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The user name of the user running Pegasus.
- mUsername - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.CreateTCDatabase
-
Stores the user name
- mUserOpts - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Handle to the Singleton instance containing the options passed to the planner at run time.
- mUserSpecifiedSourceLocation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The user specified location from where to stage the worker packages.
- mUses - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
The list of dependant executables
- mUses - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mUses - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
List of executable of files used by the transformation
- mUseSizeFactor - Variable in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
A boolean indicating whether we prefer use the size factor or the num factor
- mUsesLinkType - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The uses link type for a file when uses tag is parsed.
- mUsesPegasusFile - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The PegasusFile object that a uses tag corresponds to.
- mUsesPMC - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
A boolean indicating whether we use PMC or not
- mUseSymLinks - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This member variable if set causes the destination URL for the symlink jobs to have symlink:// url if the pool attributed associated with the pfn is same as a particular jobs execution pool.
- mUseSymLinks - Variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
This member variable if set causes the destination URL for the symlink jobs to have symlink:// url if the pool attributed associated with the pfn is same as a particular jobs execution pool.
- mUseUserSpecifiedSourceLocation - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Boolean indicating whether to use the user specified location or not
- mValue - Variable in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
The value of the connection key.
- mValue - Variable in enum edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
- mValue - Variable in class edu.isi.pegasus.planner.classes.Profile
- mValue - Variable in class edu.isi.pegasus.planner.dax.MetaData
-
Metadata value
- mValue - Variable in class edu.isi.pegasus.planner.dax.Profile
-
Value of the profile
- mValue - Variable in class edu.isi.pegasus.planner.invocation.Boot
-
The text value
- mValue - Variable in class edu.isi.pegasus.planner.invocation.CPU
-
The text value
- mValue - Variable in class edu.isi.pegasus.planner.invocation.Stamp
-
The text value
- mValue - Variable in class edu.isi.pegasus.planner.invocation.Uname
-
The text value
- mValue - Variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
This instance variable captures the token value for the reserved word.
- mValue - Variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
The value for the Label.
- mVDSArchToNMIArch - Static variable in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
The map storing architecture to corresponding NMI architecture platforms.
- mVDSOSToNMIOS - Static variable in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
The map storing OS to corresponding NMI OS platforms.
- mVDSProps - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The list of VDS properties set at runtime by the user on commandline.
- mVDSToPegasusPropertiesTable - Static variable in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The handle to the internal map, that maps vds properties to pegasus properties.
- mVersion - Variable in class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback
-
The version detected.
- mVersion - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The mVersion of the transformation.
- mVersion - Variable in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
The version
- mVersion - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The planner version
- mVersion - Variable in class edu.isi.pegasus.planner.client.Executable
-
It stores the verison of the Griphyn Virtual Data System software.
- mVersion - Variable in class edu.isi.pegasus.planner.dax.AbstractJob
- mVersion - Variable in class edu.isi.pegasus.planner.dax.Executable
-
Version of the executable
- mVersion - Variable in class edu.isi.pegasus.planner.dax.File
-
The logical version of the file.
- mVersion - Variable in class edu.isi.pegasus.planner.dax.Transformation
-
Version of the transformation
- mVersionPattern - Static variable in class edu.isi.pegasus.planner.dax.Patterns
- mvExecPools - Variable in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
The List containing the user specified list of pools on which he wants the dag to run.
- mvExecPools - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
List of execution pools on which the user wants the Dag to be executed.
- mVJobInpFiles - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Holds the input files for a particular job making the aDag.
- mVJobOutFiles - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Holds the output files for a particular job making the aDag.
- mVO - Variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The VO to which the user belongs to.
- mVO - Variable in class edu.isi.pegasus.planner.client.PegasusGetSites
- mVOGroup - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The VOGroup to which the user belonged to.
- mVOGroup - Variable in class edu.isi.pegasus.planner.classes.PlannerOptions
-
The VOGroup to which the user belongs to.
- mWFMetrics - Variable in class edu.isi.pegasus.planner.classes.DagInfo
-
The workflow metric objects that contains metrics about the workflow being planned.
- mWFMetrics - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The metrics about the workflow.
- mWhat - Variable in class edu.isi.pegasus.planner.dax.Invoke
-
What to invoke
- mWhen - Variable in class edu.isi.pegasus.planner.dax.Invoke
-
WHen to Invoke
- mWholeCommandString - Variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
All the arguments to a particular job.
- mWord - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
The word that is to be searched for.
- mWordLength - Variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
The length of the word to be searched for.
- mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The work dir path from the properties.
- mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Contains the information about the work directory on the remote site.
- mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The path to the work directory.
- mWorkDir - Variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The working directory relative to the mount point of the execution pool.
- mWorkDir - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The working directory relative to the mount point of the execution pool.
- mWorkerFS - Variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The handle to the worker node filesystem.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
A boolean indicating whether to have worker node execution or not.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
A boolean indicating whether to have worker node execution or not.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Boolean indicating worker node execution.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
A boolean indicating whether to have worker node execution or not.
- mWorkerNodeExecution - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A boolean indicating whether we are doing worker node execution or not.
- mWorkerPackageMap - Variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
Worker Package Map, that indexes execution site with the location of the corresponding worker package in the submit directory
- mWorkerPackageMap - Variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
A map indexed by execution site and the corresponding worker package location in the submit directory
- mWorkerPackageStagingEnabled - Variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Boolean indicating whether worker package staging is enabled or not.
- mWorkers - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The handle to the pool of threads that this thread pool is reponsible for.
- mWorkerShared - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
The directory shared only amongst the worker nodes.
- mWorkerShared - Variable in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
The directory shared only amongst the worker nodes.
- mWorkflow - Variable in class edu.isi.pegasus.planner.parser.dax.DAX2NewGraph
-
The Graph instance that stores the abstract workflow as a Graph.
- mWorkflow - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
The workflow object being worked upon.
- mWorkflow - Variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The workflow in the graph format, that needs to be scheduled.
- mWorkflowCache - Variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
A Replica Catalog, that tracks all the GET URL's for the files on the staging sites.
- mWorkflowID - Variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
the workflow id used.
- mWorkflowRefinementStarted - Variable in class edu.isi.pegasus.planner.classes.ADag
-
Boolean indicating whether the refinement process on the workflow has started or not.
- mWorkflowUUID - Variable in class edu.isi.pegasus.planner.classes.ADag
-
The UUID associated with the workflow.
- mWorkflowUUID - Variable in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The UUID associated with the workflow.
- mWriteHandle - Variable in class edu.isi.pegasus.planner.code.generator.Shell
-
The handle to the output file that is being written to.
- mWriteHandle - Variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The write handle to the xml file being written.
- mWriteHandle - Variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The write handle to the xml file being written.
- mWriteLine - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mWriter - Variable in class edu.isi.pegasus.common.util.XMLWriter
- mWriter - Variable in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
The internal writer
- mWriter - Variable in class edu.isi.pegasus.planner.dax.ADAG
-
Handle the XML writer
- mXMLStore - Variable in class edu.isi.pegasus.planner.cluster.Horizontal
-
The XML Producer object that records the actions.
- mXMLStore - Variable in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
The XML Producer object that records the actions.
- mXMLStore - Variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The XML Producer object that records the actions.
- mXMLStore - Variable in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
The XML Producer object that records the actions.
- MyCallBackHandler() - Constructor for class edu.isi.pegasus.planner.partitioner.MultipleLook.MyCallBackHandler
-
The empty constructor.
- MyCallBackHandler() - Constructor for class edu.isi.pegasus.planner.partitioner.SingleLook.MyCallBackHandler
-
The empty constructor.
- myquote(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Quotes an input string for XML attributes while converting nulls.
N
- name - Variable in class edu.isi.pegasus.gridftp.FileInfo
- name - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- name - Variable in class edu.isi.pegasus.planner.classes.NameValue
-
stores the name of the pair.
- name - Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Stores the name of the pair (the left handside of the mapping).
- NAME - Static variable in class edu.isi.pegasus.common.util.Separator
-
This constant defines the separator between an identifier and its version.
- NAME - Static variable in class edu.isi.pegasus.gridftp.PegasusGridFTP
- namespace - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- namespace - Variable in class edu.isi.pegasus.planner.classes.Job
-
The namespace to which the transformation is bound.
- Namespace - Class in edu.isi.pegasus.planner.namespace
-
The base namespace class that all the othernamepsace handling classes extend.
- Namespace() - Constructor for class edu.isi.pegasus.planner.namespace.Namespace
- NAMESPACE - Static variable in class edu.isi.pegasus.common.util.Separator
-
This constant defines the separator between a namespace and the identifier.
- NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The namespace to which the job in the MEGA DAG being created refer to.
- NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The namespace to which the job in the MEGA DAG being created refer to.
- NAMESPACE - Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
-
A namespace we can use to identify relationships and concepts defined for Pegasus' provenance data
- NAMESPACE() - Constructor for enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- NAMESPACE_NAME - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the namespace that this class implements.
- NAMESPACE_NAME - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the namespace that this class implements.
- NAMESPACE_NAME - Static variable in class edu.isi.pegasus.planner.namespace.ENV
-
The name of the namespace that this class implements.
- NAMESPACE_NAME - Static variable in class edu.isi.pegasus.planner.namespace.Globus
-
The name of the namespace that this class implements.
- NAMESPACE_NAME - Static variable in class edu.isi.pegasus.planner.namespace.Hints
-
The name of the namespace that this class implements.
- NAMESPACE_NAME - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the namespace that this class implements.
- NAMESPACE_NAME - Static variable in class edu.isi.pegasus.planner.namespace.Selector
-
The name of the namespace that this class implements.
- NAMESPACE_NAME - Static variable in class edu.isi.pegasus.planner.namespace.Stat
-
The name of the namespace that this class implements.
- Namespace.EmptyIterator - Class in edu.isi.pegasus.planner.namespace
-
An empty iterator that allows me to traverse in case of null objects.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Returns the name of the namespace associated with the profile implementations.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Returns the name of the namespace associated with the profile implementations.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Returns the name of the namespace associated with the profile implementations.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Returns the name of the namespace associated with the profile implementations.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Returns the name of the namespace associated with the profile implementations.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns the name of the namespace associated with the profile implementations.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Returns the name of the namespace associated with the profile implementations.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Returns the name of the namespace associated with the profile implementations.
- namespaceName() - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Returns the name of the namespace associated with the profile implementations.
- NAMESPACES() - Constructor for enum edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- namespaceToPropertiesPrefix() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
- namespaceValid(String) - Static method in class edu.isi.pegasus.planner.classes.Profile
-
Returns a boolean indicating whether the namespace is valid or not.
- NameValue - Class in edu.isi.pegasus.planner.classes
-
The object of this class holds the name value pair.
- NameValue() - Constructor for class edu.isi.pegasus.planner.classes.NameValue
-
the default constructor which initialises the class member variables.
- NameValue() - Constructor for class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
The default constructor which initialises the class member variables.
- NameValue(String, int) - Constructor for class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Initialises the class member variables to the values passed in the arguments.
- NameValue(String, String) - Constructor for class edu.isi.pegasus.planner.classes.NameValue
-
Initialises the class member variables to the values passed in the arguments.
- nano0 - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- needsSLSInputTransfers(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Returns a boolean indicating whether it will an input file for a job to do the transfers.
- needsSLSInputTransfers(Job) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Returns a boolean indicating whether it will an input file for a job to do the transfers.
- needsSLSInputTransfers(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns a boolean indicating whether it will an input file for a job to do the transfers.
- needsSLSOutputTransfers(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Condor
-
Returns a boolean indicating whether it will an output file for a job to do the transfers.
- needsSLSOutputTransfers(Job) - Method in interface edu.isi.pegasus.planner.transfer.SLS
-
Returns a boolean indicating whether it will an output file for a job to do the transfers.
- needsSLSOutputTransfers(Job) - Method in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
Returns a boolean indicating whether it will an output file for a job to do the transfers.
- Netlogger - Class in edu.isi.pegasus.common.logging.format
-
This formatter formats the messages in the netlogger format.
- Netlogger() - Constructor for class edu.isi.pegasus.common.logging.format.Netlogger
-
The default constructor.
- NETLOGGER_BP_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The suffix to use while constructing the name of the metrics file
- NETLOGGER_LOG_FORMATTER_IMPLEMENTOR - Static variable in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
- NETLOGGER_LOG_FORMATTER_IMPLEMENTOR - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
- NetloggerEvent - Class in edu.isi.pegasus.common.logging.format
-
The netlogger event.
- NetloggerEvent() - Constructor for class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
The default constructor.
- NetloggerJobMapper - Class in edu.isi.pegasus.planner.code.generator
-
This class can write out the job mappings that link jobs with jobs in the DAX to a Writer stream in the netlogger format.
- NetloggerJobMapper(LogManager) - Constructor for class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
The default constructor.
- NetloggerPostScript - Class in edu.isi.pegasus.planner.code.gridstart
-
This postscript invokes the netlogger-exitcode to parse the kickstart output and write out in netlogger format.
- NetloggerPostScript() - Constructor for class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The default constructor.
- never - edu.isi.pegasus.planner.dax.Invoke.WHEN
- next() - Method in class edu.isi.pegasus.planner.namespace.Namespace.EmptyIterator
-
Returns a null as we are iterating over nothing.
- next() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.BottomUpIterator
-
Returns the next object in the traversal order.
- next() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
Returns the next object in the traversal order.
- next() - Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
Returns the next node to be traversed
- nextDouble() - Static method in class edu.isi.pegasus.planner.common.PegRandom
-
Returns a double value between 0.0 and 1.0.
- nextGaussian() - Static method in class edu.isi.pegasus.planner.common.PegRandom
-
Returns a normally distributed (gaussian) random variable between 0.0 and 1.0.
- nextToken() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Obtains the next token from the input stream.
- nextToken() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Obtains the next token from the input stream.
- niceString(String) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Remove potential leading and trainling quotes from a string.
- niceString(String) - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Remove potential leading and trainling quotes from a string.
- NMI2VDSSysInfo - Class in edu.isi.pegasus.planner.catalog.transformation.classes
-
An Adapter class that translates the new NMI based Architecture and OS specifications to VDS ( VDS era ) Arch and Os objects
- NMI2VDSSysInfo() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
- nmiArchToVDSArch(SysInfo.Architecture) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
Returns the the VDS Arch object corresponding to the new NMI Architecture object .
- nmiArchToVDSArch(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
Returns the VDS Arch object corresponding to the new NMI Architecture object .
- NMIArchToVDSArchMap() - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
Singleton access to the NMI arch to VDS arch map.
- nmiOSToVDSOS(SysInfo.OS) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
Returns the VDS Os object corresponding to the new NMI OS object .
- nmiOSToVDSOS(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
Returns the VDS Os object corresponding to the new NMI OS object .
- NMIOSToVDSOSMap() - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
Singleton access to the os to NMI os map.
- nmiToVDSSysInfo(SysInfo) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
Returns the VDSSysInfo object.
- nmiToVDSSysInfo(SysInfo.Architecture, SysInfo.OS, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
Returns the VDS VDSSysInfo object corresponding to the NMI arch and OS
- NO_GRIDSTART_INDEX - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The index in the constant arrays for NoGridStart.
- NO_MATCH - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- NO_OF_TRANSIENT_FLAGS - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The number of transient flags.
- Node - Class in edu.isi.pegasus.planner.provisioner
-
An instance of this class represents an independent task of a workflow.
- Node(String) - Constructor for class edu.isi.pegasus.planner.provisioner.Node
- Node(String, String, int, long) - Constructor for class edu.isi.pegasus.planner.provisioner.Node
- Node(String, String, long) - Constructor for class edu.isi.pegasus.planner.provisioner.Node
-
constructor
- NodeCollapser - Class in edu.isi.pegasus.planner.refiner
-
This collapses the nodes of the same logical name scheduled on the same pool into fewer fat nodes.
- NodeCollapser(PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.NodeCollapser
-
The overloaded constructor.
- NodeComp() - Constructor for class edu.isi.pegasus.planner.provisioner.OccupationDiagram.NodeComp
- nodeComparator() - Method in class edu.isi.pegasus.planner.partitioner.Horizontal
-
Singleton access to the job comparator.
- nodeIterator() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns an iterator for the nodes in the Graph.
- nodeIterator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns an iterator for the nodes in the Graph.
- nodeIterator() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns an iterator for the nodes in the Graph.
- nodeIterator() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns an iterator for the nodes in the Graph.
- NODENAME_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The nodename attribute for the uname
- nodes - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- nodes - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
- NoGridStart - Class in edu.isi.pegasus.planner.code.gridstart
-
This class ends up running the job directly on the grid, without wrapping it in any other launcher executable.
- NoGridStart() - Constructor for class edu.isi.pegasus.planner.code.gridstart.NoGridStart
- noHassleInstance() - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Singleton interface: Creates the one and only instance of the properties in the current application, and does not bother the programmer with exceptions.
- noLine() - Method in class edu.isi.pegasus.common.util.XMLWriter
- NON_SHARED_FS_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the non shared filesystem configuration.
- NON_SINGLETON_LOAD - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
- NON_SINGLETON_LOAD - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
- none - edu.isi.pegasus.planner.classes.PlannerOptions.CLEANUP_OPTIONS
- NONE - edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
- NonJavaCallout - Class in edu.isi.pegasus.planner.selector.site
-
This is the class that implements a call-out to a site selector which is an application or executable script.
- NonJavaCallout() - Constructor for class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The default constructor.
- nonSingletonInstance() - Static method in class edu.isi.pegasus.planner.common.PegasusProperties
-
To get a reference to the the object.
- nonSingletonInstance(String) - Static method in class edu.isi.pegasus.common.util.CommonProperties
-
Create a temporary property that is not attached to the Singleton.
- nonSingletonInstance(String) - Static method in class edu.isi.pegasus.planner.common.PegasusProperties
-
To get a reference to the the object.
- nonSingletonInstance(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The method that returns a Non Singleton instance of the dervived InfoProvider class.
- nonSingletonInstance(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The method that returns a Non Singleton instance of the dervived InfoProvider class.
- nonSingletonInstance(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
-
The method that returns a Non Singleton instance of the dervived InfoProvider class.
- NOOP_PREFIX - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The prefix for the NoOP jobs that are created.
- NOOP_PREFIX - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The prefix for the NoOP jobs that are created.
- NoPOSTScript - Class in edu.isi.pegasus.planner.code.gridstart
-
This class refers to having no postscript associated with the job.
- NoPOSTScript() - Constructor for class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
The default constructor.
- noquote(String) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Removes a pair of outer quotes, which are optional.
- nordugrid - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- normalize() - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Normalizes a misconfigured nodename that contains a domainname.
- NoSuchFileException - Exception in edu.isi.pegasus.gridftp
- NoSuchFileException(String) - Constructor for exception edu.isi.pegasus.gridftp.NoSuchFileException
- NoSuchFileException(String, Throwable) - Constructor for exception edu.isi.pegasus.gridftp.NoSuchFileException
- NOT_PERMITTED_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The key is not permitted in as it clashes with default Pegasus constructs.
- Notifications - Class in edu.isi.pegasus.planner.classes
-
A container class that stores all the notifications that need to be done indexed by the various conditions.
- Notifications() - Constructor for class edu.isi.pegasus.planner.classes.Notifications
-
The default constructor.
- NOTIFICATIONS_FILE_SUFFIX - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The suffix to use while constructing the name of the metrics file
- notPermitted(String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Warns about a namespace profile key that cannot be permitted.
- now() - Method in class edu.isi.pegasus.common.util.Currently
-
Obtains the current time as formatted string according to the format option.
- now(Date) - Method in class edu.isi.pegasus.common.util.Currently
-
Obtains the current time as formatted string according to the format option.
- NPbalance(LinkedList[], int, boolean) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
Non-propagate redistribution of this task
- NUM_OF_EXPANDED_JOBS - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The number of jobs into which each job in the partition graph is expanded to.
- NUMBER_OF_THREADS - Static variable in class edu.isi.pegasus.planner.refiner.ThreadPool
-
The maximum number of authentication threads that are spawned.
- numberOfConsitutentJobs() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns the number of constituent jobs.
- numericValue() - Method in class edu.isi.pegasus.common.util.CondorVersion
-
Returns the condor version parsed by executing the condor_version command.
- numericValue(String) - Static method in class edu.isi.pegasus.common.util.CondorVersion
-
Converts a string into the corresponding numeric value.
O
- OccupationDiagram - Class in edu.isi.pegasus.planner.provisioner
-
This class keeps structure of an Occupation Diagram and conduct BTS algorithm
- OccupationDiagram(long) - Constructor for class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
Constructor
- OccupationDiagram.NodeComp - Class in edu.isi.pegasus.planner.provisioner
-
Comparator which compare the schedulable duration of two nodes
- olb - Variable in class edu.isi.pegasus.planner.provisioner.Node
- OLD_XML3_IMPLEMENTING_CLASS_BASENAME - Static variable in class edu.isi.pegasus.planner.catalog.site.SiteFactory
-
The name of old XML3 implementation class.
- OLDFILE_TC_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
- on_error - edu.isi.pegasus.planner.dax.Invoke.WHEN
- on_success - edu.isi.pegasus.planner.dax.Invoke.WHEN
- One2One - Class in edu.isi.pegasus.planner.partitioner
-
This partitioning technique considers each of the job in the dax as a separate partition.
- One2One(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.One2One
-
The overloaded constructor.
- ONTOLOGY_LOCATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- OpenBrace - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to convey a opened brace, no token value necessary.
- OpenBrace() - Constructor for class edu.isi.pegasus.planner.parser.tokens.OpenBrace
- OpenParanthesis - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to convey a closed paranthesis, no token value necessary.
- OpenParanthesis() - Constructor for class edu.isi.pegasus.planner.parser.tokens.OpenParanthesis
- OPERATION() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
- operationsFor(FileServerType.OPERATION) - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
-
Returns a collection of operations corresponding to a get or put operation
- operationsForGET() - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
-
Returns a collection of get operations.
- operationsForPUT() - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
-
Returns a collection of get operations.
- OPTIONAL - edu.isi.pegasus.planner.dax.File.TRANSFER
- OPTIONAL_BIT_FLAG - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The index of the flags field which when set indicates that the file is to be considered optional.
- optionalArgSet() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the flag to denote whether the optional argument for the random was specified or not.
- options() - Static method in class edu.isi.pegasus.gridftp.PegasusGridFTP
- orb - Variable in class edu.isi.pegasus.planner.provisioner.Node
- order(Partition) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Returns the nodes in the partition as a List in a particular order.
- order(Partition) - Method in class edu.isi.pegasus.planner.cluster.Vertical
-
Returns the nodes in the partition as a List in the topologically sorted order.
- os - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Os of the system.
- Os - Class in edu.isi.pegasus.planner.catalog.transformation.classes
- Os(String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- OS - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "os".
- OS() - Constructor for enum edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
- OS() - Constructor for enum edu.isi.pegasus.planner.dax.Executable.OS
- OS_COMBINE_SEPARATOR - Static variable in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
The separator used to combine OS version and release.
- OS_COMBINE_SEPARATOR - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.NMI2VDSSysInfo
-
The separator used to combine OS version and release.
- OS_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the operating system type of the remote machines to which the jobmanager talks to.
- OSGMM - Class in edu.isi.pegasus.planner.catalog.site.impl
-
The OSGMM implementation of the Site Catalog interface.
- OSGMM() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The default constructor.
- OSGMM.ListCallback - Class in edu.isi.pegasus.planner.catalog.site.impl
-
An inner class, that implements the StreamGobblerCallback to store all the lines in a List
- OSRELEASE - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "osrelease".
- osToOSReleaseAndVersion() - Static method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Maps each to OS to a specific OS release for purposes of picking up the correct worker package for a site.
- osversion - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Os version of the system.
- OSVERSION - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserver word "osversion".
- OTHER_FILE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The type denoting that a logical file is an other file.
- OTHER_TYPE - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The string value of a file that is of type other.
- outEdges - Variable in class edu.isi.pegasus.planner.provisioner.Node
- output - edu.isi.pegasus.planner.dax.File.LINK
- OUTPUT - edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
- OUTPUT - edu.isi.pegasus.planner.dax.File.LINK
- OUTPUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines the file on the submit host on which postscript is to be invoked.
- outputFiles - Variable in class edu.isi.pegasus.planner.classes.Job
-
Contains the output files for the submit file.
- OutputMapper - Interface in edu.isi.pegasus.planner.transfer.mapper
-
The interface that defines how to map the output files to a stage out site.
- OutputMapperFactory - Class in edu.isi.pegasus.planner.transfer.mapper
-
The factory class that loads an appropriate Transfer OutputMapper class, as specified by the properties.
- OutputMapperFactory() - Constructor for class edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactory
- OutputMapperFactoryException - Exception in edu.isi.pegasus.planner.transfer.mapper
-
Class to notify of failures while instantiating Output Mappers.
- OutputMapperFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactoryException
-
Constructs a
OutputMapperFactoryException
with no detail message. - OutputMapperFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactoryException
-
Constructs a
OutputMapperFactoryException
with the specified detailed message. - OutputMapperFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactoryException
-
Constructs a
OutputMapperFactoryException
with the specified detailed message and a cause. - OutputMapperFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactoryException
-
Constructs a
OutputMapperFactoryException
with the specified detailed message and a cause.
P
- PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
- PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.transformation.Mapper
-
The name of the package where the implementing classes reside.
- PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
Default PACKAGE PATH for the TC implementing classes
- PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The name of the package in which the writers are implemented.
- PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The package name where the implementing classes of this interface reside.
- PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.refiner.CreateDirectory
-
The name of the package in which all the implementing classes are.
- PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The name of the package in which all the implementing classes are.
- PACKAGE_NAME - Static variable in class edu.isi.pegasus.planner.selector.TransformationSelector
- PARALLEL_UNIVERSE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
- PARALLEL_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for parallel universe.
- parent - Variable in class edu.isi.pegasus.planner.classes.PCRelation
-
the parent making up the parent child relationship pair in a dag
- PARENT_JOB_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The atrribute key for parent job id.
- PARENT_TASK_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The atrribute key for parent task id.
- parents(String, List) - Method in class edu.isi.pegasus.planner.cluster.Abstract
-
Associates the relations between the partitions with the corresponding relations between the clustered jobs that are created for each Partition.
- parents(String, List) - Method in interface edu.isi.pegasus.planner.cluster.Clusterer
-
Associates the relations between the partitions with the corresponding relations between the clustered jobs that are created for each Partition.
- parents(String, List) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Am empty implementation of the callout, as state is maintained internally to determine the relations between the jobs.
- parentsColored(int) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Returns if all the parents of that node have the color that is specified.
- parentsToString() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
A convenience methods that generates a comma separated list of parents as String
- parse() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Parses the complete input stream, into the PoolConfig data object that holds the contents of all the sites referred to in the stream.
- parse(boolean) - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Parses the complete input stream, into the PoolConfig data object that holds the contents of all the sites referred to in the stream.
- parse(InputStream) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This function parses a XML source from an InputStream source, and creates java class instances that correspond to different elements in the XML source.
- parse(Reader) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This function parses a XML source from the new Reader source, and creates java class instances that correspond to different elements in the XML source.
- parse(String) - Static method in class edu.isi.pegasus.common.util.Boolean
-
Converts a boolean string representation into a boolean value.
- parse(String) - Static method in class edu.isi.pegasus.common.util.Currently
-
Parses one of the ISO 8601 that it produces.
- parse(String) - Method in class edu.isi.pegasus.common.util.PegasusURL
-
Parses the url and populates the internal member variables that can be accessed via the appropriate accessor methods
- parse(String) - Static method in class edu.isi.pegasus.common.util.ProfileParser
-
Parses a given user profile specification into a map of maps.
- parse(String) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- parse(String) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Consumes commands that control the replica management.
- parse(String, boolean) - Static method in class edu.isi.pegasus.common.util.Boolean
-
Converts a boolean string representation into a boolean value.
- parse(String, int) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Parses a line from the file replica catalog
- parse(String, int) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Parses a line from the file replica catalog
- parse(String, String) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Consumes commands that control the replica management.
- parseCommandLineArguments(String[]) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Parses the command line arguments using GetOpt and returns a
PlannerOptions
contains all the options passed by the user at the command line. - parseCommandLineArguments(String[]) - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Parses the command line arguments using GetOpt and sets the class member variables.
- parseCommandLineArguments(String[]) - Method in class edu.isi.pegasus.planner.client.RankDAX
-
Parses the command line arguments using GetOpt and sets the class member variables.
- parseCommandLineArguments(String[]) - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Parses the command line arguments using GetOpt and returns a
PlannerOptions
contains all the options passed by the user at the command line. - parseCommandLineArguments(String[], boolean) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Parses the command line arguments using GetOpt and returns a
PlannerOptions
contains all the options passed by the user at the command line. - parseDate(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Small helper to parse the different date varieties and deal with Java obnoxeity.
- parseDAX(String) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Parses the DAX and returns the associated ADag object
- parseGridFTPResponse(String, char) - Method in class edu.isi.pegasus.planner.refiner.Authenticate
-
The parses the grid ftp server response and returns if the response was valid or not.
- parseInputFiles(List<String>, String, String) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Parses the input files in the input format and returns a String in the output format.
- parseInt(String) - Static method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Parses a string into an integer.
- parseInt(String) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Parses a string into an integer.
- parseInt(String, String) - Method in class edu.isi.pegasus.planner.namespace.aggregator.Abstract
-
Formats the String value as an integer.
- Parser - Class in edu.isi.pegasus.planner.parser
-
This is the base class which all the xml parsing classes extend.
- Parser(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.Parser
-
Intialises the parser.
- Parser(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.Parser
-
Intialises the parser.
- ParserStackElement - Class in edu.isi.pegasus.planner.parser
-
This class keeps the name of an element and its corresponding java object reference.
- ParserStackElement(String, Object) - Constructor for class edu.isi.pegasus.planner.parser.ParserStackElement
-
The overloaded constructor
- parseStdOut(Job, String) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Extracts the chosen site from the site selector's answer.
- parseTC(PegasusProperties) - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Parses the input format specified in the properties file and returns list of TransfromationCatalogEntry
- PARSING_DONE_ERROR_MESSAGE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAX2Metadata
-
The parsing completed message.
- Partition - Class in edu.isi.pegasus.planner.partitioner
-
This is an abstract container for a partition in the graph.
- Partition() - Constructor for class edu.isi.pegasus.planner.partitioner.Partition
-
The default constructor.
- Partition(List, String) - Constructor for class edu.isi.pegasus.planner.partitioner.Partition
-
The overloaded constructor.
- PARTITION_KEY - Static variable in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
The key that designates the partition to which a node belongs to.
- PARTITION_PREFIX - Static variable in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
The prefix added to the name of the dax to identify it is a partitioned dax.
- partitionDAX(PegasusProperties, String, String, String) - Method in class edu.isi.pegasus.planner.client.PartitionDAX
- PartitionDAX - Class in edu.isi.pegasus.planner.client
-
The class ends up partitioning the dax into smaller daxes according to the various algorithms/criteria, to be used for deferred planning.
- PartitionDAX() - Constructor for class edu.isi.pegasus.planner.client.PartitionDAX
-
The default constructor.
- Partitioner - Class in edu.isi.pegasus.planner.partitioner
-
The abstract class that lays out the api to do the partitioning of the dax into smaller daxes.
- Partitioner(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.Partitioner
-
The overloaded constructor.
- PartitionerFactory - Class in edu.isi.pegasus.planner.partitioner
-
A Factory class to load the right type of partitioner at runtime, as specified by the Properties.
- PartitionerFactory() - Constructor for class edu.isi.pegasus.planner.partitioner.PartitionerFactory
- PartitionerFactoryException - Exception in edu.isi.pegasus.planner.partitioner
-
Class to notify of failures while instantiating Partitioner implementations.
- PartitionerFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
-
Constructs a
PartitionerFactoryException
with no detail message. - PartitionerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
-
Constructs a
PartitionerFactoryException
with the specified detailed message. - PartitionerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
-
Constructs a
PartitionerFactoryException
with the specified detailed message and a cause. - PartitionerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.partitioner.PartitionerFactoryException
-
Constructs a
PartitionerFactoryException
with the specified detailed message and a cause. - partitionerTable() - Static method in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
Returns a table that maps, the clustering technique to an appropriate partitioning technique.
- PARTITIONING_CLASSES - Static variable in class edu.isi.pegasus.planner.partitioner.PartitionerFactory
-
An array of known partitioning classes.
- partitionRelation2XML(String, String) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Returns the xml description of a relation between 2 partitions.
- partitionRelation2XML(String, List) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Returns the xml description of a relation between 2 partitions.
- partitionRelation2XML(String, Set) - Method in class edu.isi.pegasus.planner.partitioner.WriterCallback
-
Returns the xml description of a relation between 2 partitions.
- partOfDeferredRun() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns a boolean indicating whether this invocation is part of a deferred execution or not.
- PASOA_PPS_PROVIDER - Static variable in class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
-
The default Pasoa PPS implementation to be used.
- PATCH - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
The constant for patche version type.
- PATH_VALUE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The path to be set for create dir jobs.
- PATH_VALUE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The path to be set for create dir jobs.
- Patterns - Class in edu.isi.pegasus.planner.dax
- Patterns() - Constructor for class edu.isi.pegasus.planner.dax.Patterns
- pbs - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- PBS - Class in edu.isi.pegasus.planner.code.generator
-
This code generator generates a PBS submit script for the workflow, that can be submitted directly using qsub.
- PBS - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
- PBS() - Constructor for class edu.isi.pegasus.planner.code.generator.PBS
-
The default constructor.
- pbsBasename(ADag) - Method in class edu.isi.pegasus.planner.code.generator.PBS
-
Returns the basename for the PBS file for the dag
- PCRelation - Class in edu.isi.pegasus.planner.classes
-
Captures the parent child relationship between the jobs in the ADAG.
- PCRelation() - Constructor for class edu.isi.pegasus.planner.classes.PCRelation
-
the default constructor
- PCRelation(String, String) - Constructor for class edu.isi.pegasus.planner.classes.PCRelation
-
the overloaded constructor
- PCRelation(String, String, boolean) - Constructor for class edu.isi.pegasus.planner.classes.PCRelation
-
the overloaded constructor
- PDAX2MDAG - Class in edu.isi.pegasus.planner.parser.pdax
-
This callback ends up creating the megadag that contains the smaller dags each corresponding to the one level as identified in the pdax file generated by the partitioner.
- PDAX2MDAG(String, PegasusProperties, PlannerOptions) - Constructor for class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The overloaded constructor.
- PDAX2MDAG.GrepCallback - Class in edu.isi.pegasus.planner.parser.pdax
-
An inner class, that implements the StreamGobblerCallback to count the occurences of a word in a document.
- PDAXCallbackFactory - Class in edu.isi.pegasus.planner.parser.pdax
-
A factory class to load the appropriate DAX callback implementations that need to be passed to the DAX Parser.
- PDAXCallbackFactory() - Constructor for class edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactory
- PDAXCallbackFactoryException - Exception in edu.isi.pegasus.planner.parser.pdax
-
Class to notify of failures while instantiating PDAXCallback implementations.
- PDAXCallbackFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
-
Constructs a
PDAXCallbackFactoryException
with no detail message. - PDAXCallbackFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
-
Constructs a
PDAXCallbackFactoryException
with the specified detailed message. - PDAXCallbackFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
-
Constructs a
PDAXCallbackFactoryException
with the specified detailed message and a cause. - PDAXCallbackFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.pdax.PDAXCallbackFactoryException
-
Constructs a
PDAXCallbackFactoryException
with the specified detailed message and a cause. - PDAXParser - Class in edu.isi.pegasus.planner.parser
-
This is a parser class for the parsing the pdax that contain the jobs in the various partitions and the relations between the partitions.
- PDAXParser(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.PDAXParser
-
The default constructor.
- PDAXParser(String, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.parser.PDAXParser
-
The constructor initialises the parser, and turns on the validation feature in Xerces.
- PDAXWriter - Class in edu.isi.pegasus.planner.partitioner
-
It writes out the partition graph in xml form.
- PDAXWriter(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The overloaded constructor.
- pegasus - edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- pegasus - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- Pegasus - Class in edu.isi.pegasus.planner.namespace
-
A Planner specific namespace.
- Pegasus() - Constructor for class edu.isi.pegasus.planner.namespace.Pegasus
-
The default constructor.
- Pegasus(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Pegasus
-
The overloaded constructor.
- PEGASUS - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- PEGASUS - Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- PEGASUS_APP_METRICS_PREFIX - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PEGASUS_BIN_DIR - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The name of the environment variable PEGASUS_BIN_DIR.
- PEGASUS_BIN_DIR - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The name of the environment variable PEGASUS_BIN_DIR.
- PEGASUS_CONFIGURATION_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The property key for pegasus configuration.
- PEGASUS_CONNECT_STDIN_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Whether to connect stdin or not
- PEGASUS_EXECUTE_IN_INITIAL_DIR - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The name of the environment variable that determines if job should be executed in initial dir or not
- PEGASUS_HOME - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The name of the environment variable PEGASUS_HOME.
- PEGASUS_HOME - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The name of the environment variable PEGASUS_HOME.
- PEGASUS_HOME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The name of the environment variable PEGASUS_HOME.
- PEGASUS_INFO - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
Array storing the names of the attributes that are stored with the site.
- PEGASUS_INITIAL_DIR_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The name of the environment variable for the initial dir for pegasus lite local
- PEGASUS_LITE_COMMON_FILE_BASENAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The basename of the pegasus lite common shell functions file.
- PEGASUS_LITE_EXITCODE_SUCCESS_MESSAGE - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The pegasus lite exitcode success message.
- PEGASUS_LITE_LOCAL_FILE_BASENAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The Pegasus Lite local wrapper basename.
- PEGASUS_LOGMANAGER - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the handle to the Logging manager
- PEGASUS_MONITORD_LAUNCH_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The name of the property key that determines whether pegasus-run should monitord or not.
- PEGASUS_PROPERTIES - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the PegasusProperties.
- PEGASUS_PROPERTY_PREFIX - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
-
The pegasus property prefix.
- PEGASUS_REPLICA_CATALOG_FILE_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PEGASUS_REPLICA_CATALOG_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PEGASUS_SHELL_RUNNER_FUNCTIONS_BASENAME - Static variable in class edu.isi.pegasus.planner.code.generator.Shell
- PEGASUS_SITE_CATALOG_FILE_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PEGASUS_SITE_CATALOG_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PEGASUS_TRANSFER_INPUT_FILES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The name of the environment variable for transferring input files
- PEGASUS_TRANSFER_OUTPUT_FILES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The name of the environment variable for transferring output files
- PEGASUS_TRANSFER_WORKER_PACKAGE_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PEGASUS_TRANSFORMATION_CATALOG_FILE_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PEGASUS_TRANSFORMATION_CATALOG_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PEGASUS_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The version of pegasus matching the planner.
- PEGASUS_WORKER_EXECUTABLES - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Array storing the names of the executables in the $PEGASUS_HOME/bin directory Associates the transformation name with the executable basenames
- PEGASUS_WORKER_NODE_EXECUTION_PROPERTY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- PegasusBag - Class in edu.isi.pegasus.planner.classes
-
A bag of objects that needs to be passed to various refiners.
- PegasusBag() - Constructor for class edu.isi.pegasus.planner.classes.PegasusBag
-
The default constructor.
- PegasusConfiguration - Class in edu.isi.pegasus.planner.common
-
A utility class that returns JAVA Properties that need to be set based on a configuration value
- PegasusConfiguration(LogManager) - Constructor for class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Overloaded Constructor
- PegasusExitCode - Class in edu.isi.pegasus.planner.code.gridstart
-
The exitcode wrapper, that can parse kickstart output's and put them in the database also.
- PegasusExitCode() - Constructor for class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The default constructor.
- PegasusExitCodeEncode - Class in edu.isi.pegasus.planner.code.gridstart
-
This class tries to define a mechanism to encode arguments for pegasus-exitcode, as DAGMan does not handle whitespaces correctly for postscript arguments.
- PegasusExitCodeEncode() - Constructor for class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Defines the default encoding rules escape + with \+ encode single whitespace with +
- PegasusExitCodeEncode(String, char) - Constructor for class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
-
Constructs arbitrary escaping rules.
- PegasusFile - Class in edu.isi.pegasus.planner.classes
-
The logical file object that contains the logical filename which is got from the DAX, and the associated set of flags specifying the transient characteristics.
- PegasusFile() - Constructor for class edu.isi.pegasus.planner.classes.PegasusFile
-
The default constructor.
- PegasusFile(String) - Constructor for class edu.isi.pegasus.planner.classes.PegasusFile
-
The overloaded constructor.
- PegasusFile.LINKAGE - Enum in edu.isi.pegasus.planner.classes
-
Enumeration for denoting type of linkage
- PegasusGetSites - Class in edu.isi.pegasus.planner.client
-
The client that replaces the perl based pegasus-get-sites.
- PegasusGetSites() - Constructor for class edu.isi.pegasus.planner.client.PegasusGetSites
-
The default constructor.
- PegasusGridFTP - Class in edu.isi.pegasus.gridftp
-
Implements a command-line utility for performing file and directory operations on remote GridFTP servers.
- PegasusGridFTP() - Constructor for class edu.isi.pegasus.gridftp.PegasusGridFTP
- PegasusLite - Class in edu.isi.pegasus.planner.code.gridstart
-
This class launches all the jobs using Pegasus Lite a shell script based wrapper.
- PegasusLite() - Constructor for class edu.isi.pegasus.planner.code.gridstart.PegasusLite
- PegasusProperties - Class in edu.isi.pegasus.planner.common
-
A Central Properties class that keeps track of all the properties used by Pegasus.
- PegasusProperties(String) - Constructor for class edu.isi.pegasus.planner.common.PegasusProperties
-
The constructor that constructs the default paths to the various configuration files, and populates the singleton instance as required.
- PegasusProperties.CLEANUP_SCOPE - Enum in edu.isi.pegasus.planner.common
-
An enum defining The scope for cleanup algorithm
- PegasusURL - Class in edu.isi.pegasus.common.util
-
A common PegasusURL class to use by the planner and other components.
- PegasusURL() - Constructor for class edu.isi.pegasus.common.util.PegasusURL
-
The default constructor.
- PegasusURL(String) - Constructor for class edu.isi.pegasus.common.util.PegasusURL
-
The overloaded constructor.
- PegRandom - Class in edu.isi.pegasus.planner.common
-
A Helper class that returns the Random values using java.util.Random class.
- PegRandom() - Constructor for class edu.isi.pegasus.planner.common.PegRandom
- PERFMETRIC_CPU_UTILIZATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- PERFMETRIC_CPU_UTILIZATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- PERFMETRIC_MEMORY_UTILIZATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- PERFMETRIC_MEMORY_UTILIZATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- PERFMETRIC_NETWORK_BANDWIDTH - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- PERFMETRIC_NETWORK_BANDWIDTH - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- PERFMETRIC_TIME_DURATION - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- PERFMETRIC_TIME_DURATION - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- PERIODIC_RELEASE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies the peridic release
- PERIODIC_REMOVE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies the peridic remove
- PermissionDeniedException - Exception in edu.isi.pegasus.gridftp
- PermissionDeniedException(String) - Constructor for exception edu.isi.pegasus.gridftp.PermissionDeniedException
- PermissionDeniedException(String, Throwable) - Constructor for exception edu.isi.pegasus.gridftp.PermissionDeniedException
- pfn - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- pfn - Variable in class edu.isi.pegasus.planner.client.TCClient
- PFN - Class in edu.isi.pegasus.planner.dax
- PFN - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "pfn".
- PFN(String) - Constructor for class edu.isi.pegasus.planner.dax.PFN
- PFN(String, String) - Constructor for class edu.isi.pegasus.planner.dax.PFN
- PFN_HINT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Hints
-
The pfnHint key
- pfnIterator() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns an iterator to the list of
ReplicaCatalogEntry
objects. - pickPath(String, String) - Method in class edu.isi.pegasus.common.util.CommonProperties
- Pipeline - Class in edu.isi.pegasus.planner.dax.examples
- Pipeline() - Constructor for class edu.isi.pegasus.planner.dax.examples.Pipeline
- PLANNER_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The arguments passed to the planner.
- PLANNER_CACHE - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the handle to the planner cache for planning purposes.
- PLANNER_CACHE_REPLICA_CATALOG_IMPLEMENTER - Static variable in class edu.isi.pegasus.planner.classes.PlannerCache
-
The name of the Replica Catalog Implementer that serves as the source for cache files.
- PLANNER_CACHE_REPLICA_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.classes.PlannerCache
-
The name of the source key for Replica Catalog Implementer that serves as cache
- PLANNER_METRICS - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the the planner metrics that are logged during the planning purpose
- PLANNER_OPTIONS - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the options passed to the planner.
- PLANNER_VERSION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Key for the planner version
- PlannerCache - Class in edu.isi.pegasus.planner.classes
-
A data class that is used to track the various files placed by the mapper on the staging sites for the workflow.
- PlannerCache() - Constructor for class edu.isi.pegasus.planner.classes.PlannerCache
-
The default constructor.
- PlannerMetrics - Class in edu.isi.pegasus.planner.classes
-
A Data class containing the metrics about the planning instance.
- PlannerMetrics() - Constructor for class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The default metrics.
- PlannerOptions - Class in edu.isi.pegasus.planner.classes
-
Holds the information about thevarious options which user specifies to the Concrete Planner at runtime.
- PlannerOptions() - Constructor for class edu.isi.pegasus.planner.classes.PlannerOptions
-
Default Constructor.
- PlannerOptions.CLEANUP_OPTIONS - Enum in edu.isi.pegasus.planner.classes
-
The various cleanup options supported by the planner
- plannerUsesPMC() - Method in class edu.isi.pegasus.planner.classes.PegasusBag
-
A convenice method to return whether the planner used PMC or not
- PMC - Class in edu.isi.pegasus.planner.code.generator
-
This code generator generates a shell script in the submit directory.
- PMC() - Constructor for class edu.isi.pegasus.planner.code.generator.PMC
-
The default constructor.
- PMC_PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
A key to designate a priority to the jobs run by pegasus-mpi-cluster.
- PMC_REQUEST_CPUS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
A key to designate the number of CPU's requested by pegasus-mpi-cluster.
- PMC_REQUEST_MEMORY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
A key to designate the memory required by a job in MB by pegasus-mpi-cluster.
- PMC_TASK_ARGUMENTS - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
Arguments that need to be passed to the PMC clustering executable.
- pmcBasename(ADag) - Method in class edu.isi.pegasus.planner.code.generator.PMC
-
Returns the basename for the pmc file for the dag
- PoolConfig - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
A data class to store information about the various remote sites.
- PoolConfig() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
The default constructor.
- PoolInfoProvider - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
This is an abstract class which defines the interface for the information providers like sites.xml, sites.catalog.
- PoolInfoProvider() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
- PoolMode - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
This class determines at runtime which implementing class to use as a Pool Handle.
- PoolMode() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
- poolNotFoundMsg(String, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
This generates a error message for pool not found in the pool config file.
- PoolTransfer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
The default constructor.
- PoolTransfer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
The default constructor.
- PoolTransfer(String, boolean, int) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.PoolTransfer
-
Convenience constructor.
- PoolTransfer(String, boolean, int) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle.PoolTransfer
-
Convenience constructor.
- popEvent() - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Pop the event on top of the internal stack.
- popEvent() - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Pop the event on top of the internal stack.
- populate(SiteInfo) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Populates all the attributes except the handle, associated with the site in the
SiteInfo
object. - populatePeriodicReleaseAndRemoveInJob(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Populates the periodic release and remove values in the job.
- populateSiteMap(List) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Populates the number of free nodes for each site, by querying the Site Catalog.
- populateSiteMaps(String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Builds up the set of preferred and ignored sites for a site.
- populateTC() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Populates the internal copy of the transformation catalog from the file containing the transformation catalog in the 6 column format.
- populateTC(InputStream) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Populates the internal copy of the transformation catalog from a byte stream (input stream).
- populateTC(Reader) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Adds multiple entries into the TC.
- port - Variable in class edu.isi.pegasus.gridftp.GridFTPConnection
- port - Static variable in class edu.isi.pegasus.planner.invocation.SimpleServer
- PORTFOLIO_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- PORTFOLIO_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- POST_SCRIPT_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines the arguments that need to be passed to the postscript.
- POST_SCRIPT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines what post script is to be invoked when the job completes.
- POST_SCRIPT_PATH_PREFIX - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key prefix that determines the path to a postscript
- POST_SCRIPT_REPLACEMENT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for the post script that is put in the .dag file.
- POST_SCRIPT_SCOPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key prefix that determines the path to a postscript
- postProcess(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
An optional method that allows the derived classes to do their own post processing on the the transfer job before it is returned to the calling module.
- postProcess(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Makes sure the stdin is transferred by the Condor File Transfer Mechanism.
- postProcess(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
-
Makes sure the stdin is transferred by the Condor File Transfer Mechanism.
- postProcess(TransferJob) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
An optional method that allows the derived classes to do their own post processing on the the transfer job before it is returned to the calling module.
- postScript(String) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Returns the cached implementation of
POSTScript
from the implementing class table. - POSTScript - Interface in edu.isi.pegasus.planner.code
-
The interface that defines the creation of a POSTSCRIPT for a job.
- POSTSCRIPT_ARGUMENTS_FOR_ONLY_ROTATING_LOG_FILE - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The arguments for pegasus-exitcode when you only want the log files to be rotated.
- POSTSCRIPT_ARGUMENTS_FOR_ONLY_ROTATING_LOG_FILE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The arguments for pegasus-exitcode when you only want the log files to be rotated.
- POSTSCRIPT_ARGUMENTS_FOR_ONLY_ROTATING_LOG_FILE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The arguments for pegasus-exitcode when you only want the log files to be rotated.
- POSTSCRIPT_IMPLEMENTING_CLASS_TABLE - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
A table that associates POSTScript implementing classes with their SHORT_NAMES.
- ppc - edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- ppc - edu.isi.pegasus.planner.dax.Executable.ARCH
- PPC - edu.isi.pegasus.planner.dax.Executable.ARCH
- ppc_64 - edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- ppc_64 - edu.isi.pegasus.planner.dax.Executable.ARCH
- PPC_64 - edu.isi.pegasus.planner.dax.Executable.ARCH
- PPS - Interface in edu.isi.pegasus.planner.provenance.pasoa
-
Pegasus P-assertion Support interface Classes that implement this interface assist in the creation of p-assertions for the Pegasus workflow refinement system.
- PPSFactory - Class in edu.isi.pegasus.planner.provenance.pasoa.pps
-
The factory for instantiating an XMLProducer.
- PPSFactory() - Constructor for class edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactory
- PPSFactoryException - Exception in edu.isi.pegasus.planner.provenance.pasoa.pps
-
Class to notify of failures while instantiating PPS implementations.
- PPSFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
-
Constructs a
PPSFactoryException
with no detail message. - PPSFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
-
Constructs a
PPSFactoryException
with the specified detailed message. - PPSFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
-
Constructs a
PPSFactoryException
with the specified detailed message and a cause. - PPSFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.pps.PPSFactoryException
-
Constructs a
PPSFactoryException
with the specified detailed message and a cause. - PRE_SCRIPT_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines the arguments that need to be passed to the postscript.
- PRE_SCRIPT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines what pre script is to be invoked when the job is run.
- PRE_SCRIPT_REPLACEMENT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The key name for the pre script that is put in the .dag file.
- prec - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- prefer(String, String) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
Returns a boolean indicating whether a source site is to be preffered for staging to a destination site
- PREFIX_PROPERTIES - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The prefix of the property names that specify the environment variables that need to be set before calling out to the site selector.
- PREFIX_TEMPORARY_FILE - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The prefix to be used while creating a temporary file to pass to the external siteselector.
- prepareInputFile(Job, List) - Method in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
Writes job knowledge into the temporary file passed to the external site selector.
- prepareSTDINAndAssociateCredentials(TransferJob, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Prepares the stdin for the transfer job.
- preserveParserLineBreaks() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to preserver line breaks.
- PRIMARY_METRICS_SERVER_URL_ENV_VARIABLE - Static variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The name of the environment variable that overrides the default server url
- print() - Method in class edu.isi.pegasus.planner.provisioner.Edge
- print() - Method in class edu.isi.pegasus.planner.provisioner.Node
- print() - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Prints out the third party state for the various sites.
- print() - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Prints out the third party state for the various sites.
- print(boolean) - Static method in class edu.isi.pegasus.common.util.Boolean
-
Converts a boolean value into a strict representation of it.
- printDagString(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Writes a string to the dag file.
- printList(List) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
A utility method to print short description of jobs in a list.
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Prints the long description, displaying in detail what the various options to the command stand for.
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.Executable
-
This method is used to print the long version of the command.
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.PartitionDAX
-
Generated the long version of the help on the stdout.
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Prints out the long help.
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.RankDAX
-
This method is used to print the long version of the command.
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.SCClient
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.TCClient
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.TCConverter
- printLongVersion() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Prints the long description, displaying in detail what the various options to the command stand for.
- printNodes() - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
- printShortHelp() - Method in class edu.isi.pegasus.planner.client.RankDAX
-
This is used to print the short version of the command.
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Prints out a short description of what the command does.
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.Executable
-
This is used to print the short version of the command.
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.PartitionDAX
-
Generates the short version of the help on the stdout.
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
The short help version.
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.RankDAX
-
This is used to print the short version of the command.
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Returns the short help.
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.TCClient
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Prints the short help.
- printShortVersion() - Method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Prints out a short description of what the command does.
- printVector(String, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
It prints the contents of the Vector, with the first line being the heading.
- printXMLFormat(TransformationStore) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
Prints the transformations in XML format
- PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies the priority for the job.
- PRIORITY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines the priority a job is assigned.
- Proc - Class in edu.isi.pegasus.planner.invocation
-
The proc element.
- Proc() - Constructor for class edu.isi.pegasus.planner.invocation.Proc
-
The default constructor
- PROCESS_CATALOG_IMPL_PROPERTY - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The property that designates which Process catalog impl to pick up.
- processingInstruction(String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Receive a processing instruction.
- Processor - Class in edu.isi.pegasus.planner.selector.site.heft
-
A data class that is used to simulate a processor on a site.
- Processor() - Constructor for class edu.isi.pegasus.planner.selector.site.heft.Processor
-
The default constructor.
- processParents(Job, Collection<GraphNode>) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
It processes a nodes parents and determines if nodes are to be added or not.
- profile - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- profile - Variable in class edu.isi.pegasus.planner.client.TCClient
- Profile - Class in edu.isi.pegasus.planner.classes
-
This Class hold informations about profiles associated with a tc.
- Profile - Class in edu.isi.pegasus.planner.dax
-
Profile Object for the DAX API
- Profile() - Constructor for class edu.isi.pegasus.planner.classes.Profile
-
C'tpr for the class;
- Profile(Profile) - Constructor for class edu.isi.pegasus.planner.dax.Profile
-
Copy constructor
- Profile(Profile.NAMESPACE, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Profile
- Profile(String, String) - Constructor for class edu.isi.pegasus.planner.dax.Profile
-
Create a new Profile object
- Profile(String, String, String) - Constructor for class edu.isi.pegasus.planner.classes.Profile
-
This constructor allows to set the namespace , key and value of the PoolProfile.
- Profile(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Profile
-
Create a new Profile object
- PROFILE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the list of
Profile
objects for the remote site. - PROFILE - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserver word "profile".
- PROFILE - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "profile".
- Profile.NAMESPACE - Enum in edu.isi.pegasus.planner.dax
-
Supported NAMESPACES.
- ProfileParser - Class in edu.isi.pegasus.common.util
-
Converts between the string version of a profile specification and the parsed triples and back again.
- ProfileParser() - Constructor for class edu.isi.pegasus.common.util.ProfileParser
- ProfileParserException - Exception in edu.isi.pegasus.common.util
-
This class is used to signal errors while parsing profile strings
- ProfileParserException(String, int) - Constructor for exception edu.isi.pegasus.common.util.ProfileParserException
- ProfileParserException(String, int, Throwable) - Constructor for exception edu.isi.pegasus.common.util.ProfileParserException
- profiles - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- Profiles - Class in edu.isi.pegasus.planner.catalog.classes
-
Maintains profiles for different namespaces.
- Profiles() - Constructor for class edu.isi.pegasus.planner.catalog.classes.Profiles
-
The default constructor.
- Profiles.NAMESPACES - Enum in edu.isi.pegasus.planner.catalog.classes
-
The enumeration of valid namespaces.
- PROG - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- PROG_SETUP - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- prop(String, Object) - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
Sets a SAX property while capturing failed features right here.
- PROPERTIES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The path to the pegasus properties file
- PROPERTIES_PREFIX - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
Prefix for the property subset to use with the LogManager
- PROPERTY_FILENAME - Static variable in class edu.isi.pegasus.common.util.CommonProperties
-
Basename of the file to read to obtain system properties
- PROPERTY_IGNORE_SUFFIX - Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
The property suffix for determining the ignored sites for a site x.
- PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.transfer.mapper.OutputMapperFactory
-
The prefix for the property subset for connecting to the individual catalogs.
- PROPERTY_PREFER_SUFFIX - Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
The property suffix for determining the preferred sites for a site x.
- PROPERTY_PREFIX - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The prefix for the property subset for connecting to the individual catalogs.
- PROPERTY_PREFIX - Static variable in class edu.isi.pegasus.planner.selector.replica.Regex
-
The property prefix for all Regex rank property.
- PROPERTY_PREFIX - Static variable in class edu.isi.pegasus.planner.selector.replica.Restricted
-
The property prefix for all properties used by this selector.
- PROPERTY_PREFIX - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
-
The prefix for the property subset for this mapper implementation
- PROPERTY_PREFIX - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
The prefix for the property subset for connecting to the individual catalogs.
- propertyNames() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: enumerate all keys known to this property collection
- propertyTable() - Static method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Singleton access to the type table Contains the mapping of a property to the third party transfer type
- propertyTable() - Static method in class edu.isi.pegasus.planner.transfer.TPT
-
Singleton access to the type table Contains the mapping of a property to the third party transfer type
- props - Variable in class edu.isi.pegasus.common.util.Version
- Proxy - Class in edu.isi.pegasus.common.credential.impl
-
A convenice class that allows us to determine the path to the user proxy.
- Proxy() - Constructor for class edu.isi.pegasus.common.credential.impl.Proxy
-
The default constructor.
- PROXY_KEY - Static variable in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
The key that if set, specifies the proxy to be picked up while connecting to the RLS.
- purgePools() - Method in class edu.isi.pegasus.planner.refiner.AuthenticateEngine
-
It removies from the list of pools the pool that was not authenticated against.
- pushedChildren(long) - Method in class edu.isi.pegasus.planner.provisioner.Node
- pushedParents(long) - Method in class edu.isi.pegasus.planner.provisioner.Node
- put - edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
- put(CredentialHandler.TYPE, CredentialHandler) - Method in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
Inserts an entry into the implementing class table.
- put(Object, Object) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2Graph
-
It puts the key and the value in the internal map.
- put(String, ReplicaLocation) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Inserts entry in the store overwriting any existing entry.
- put(String, RemoteTransfer.TransferState) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Inserts an entry in to the State Map, that maintains state of various sites.
- put(String, TPT.TPTState) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Inserts an entry in to the State Map, that maintains state of various sites.
- put(String, Object) - Method in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorInstanceFactory
-
Inserts an entry into the implementing class table.
- put(String, Object) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
Inserts an entry into the implementing class table.
Q
- query - Variable in class edu.isi.pegasus.planner.client.TCClient
- QUERY_ARGUMENTS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- QUERY_ARGUMENTS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- QUERY_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- QUERY_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- QUERY_INPUT - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- QUERY_INPUT - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- QUERY_NAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- QUERY_NAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- QUERY_NUMBER - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- QUERY_NUMBER - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- QUERY_OUTPUT - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- QUERY_OUTPUT - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- QUERY_RESPONSE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- QUERY_RESPONSE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- QUEUED_TEMPLATES - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- quote(Escape, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Quotes a string only if necessary.
- quote(Escape, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Quotes a string only if necessary.
- quote(Escape, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Quotes a string only if necessary.
- quote(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Quotes a string that may contain special SQL characters.
- quote(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
Quotes a String.
- quote(String) - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
Parses a string and condor quotes it.
- quote(String) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
Condor Quotes a string
- quote(String) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Condor Quotes a string
- quote(String, boolean) - Static method in class edu.isi.pegasus.common.util.XMLOutput
-
Escapes certain characters inappropriate for XML content output.
- quote(String, boolean) - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
Parses a string and condor quotes it.
- QuotedString - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to capture the content within a quoted string.
- QuotedString(String) - Constructor for class edu.isi.pegasus.planner.parser.tokens.QuotedString
-
Initializes an instance of a quoted string.
- quoteTransferURL() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns whether to introduce quotes around url's before handing to g-u-c and condor.
R
- RAM - Class in edu.isi.pegasus.planner.invocation
-
The RAM element.
- RAM() - Constructor for class edu.isi.pegasus.planner.invocation.RAM
-
The default constructor
- Random - Class in edu.isi.pegasus.planner.selector.site
-
A random site selector that maps to a job to a random pool, amongst the subset of pools where that particular job can be executed.
- Random - Class in edu.isi.pegasus.planner.selector.transformation
-
This implemenation of the TCSelector selects a random TransformationCatalogEntry from a List of entries.
- Random() - Constructor for class edu.isi.pegasus.planner.selector.site.Random
-
The default constructor.
- Random() - Constructor for class edu.isi.pegasus.planner.selector.transformation.Random
- rank(Collection<String>) - Method in class edu.isi.pegasus.planner.ranking.Rank
-
Ranks the daxes, and returns a sort collection of Ranking objects.
- Rank - Class in edu.isi.pegasus.planner.ranking
-
The Rank class that ranks the DAX'es
- Rank() - Constructor for class edu.isi.pegasus.planner.ranking.Rank
-
The default constructor.
- Rank(int, String) - Constructor for class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
The default constructor.
- RankDAX - Class in edu.isi.pegasus.planner.client
-
A client that ranks the DAX'es corresponding to the request id.
- RankDAX() - Constructor for class edu.isi.pegasus.planner.client.RankDAX
-
The default constructor.
- Ranking - Class in edu.isi.pegasus.planner.ranking
-
A Data class that associates a DAX with the rank.
- Ranking(String, long) - Constructor for class edu.isi.pegasus.planner.ranking.Ranking
-
The overloaded constructor.
- rb - Variable in class edu.isi.pegasus.planner.provisioner.Node
- RC_DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The derivation name for the transfer jobs.
- RC_DERIVATION_NS - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The derivation namespace for the transfer jobs.
- RC_DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The version number for the derivations for registration jobs.
- RC_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The logical name of the transformation used.
- RC_TRANSFORMATION_NS - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The transformation namespace for the regostration jobs.
- RC_TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The logical name of the transformation used.
- RCClient - Class in edu.isi.pegasus.planner.client
-
This class interfaces the with the replica catalog API to delve into the underlying true catalog without knowing (once instantiated) which one it is.
- RCClient(String) - Constructor for class edu.isi.pegasus.planner.client.RCClient
-
ctor: Constructs a new instance of the commandline interface to replica catalogs.
- rcIterator() - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Returns an iterator to iterate through the list of ReplicaCatalogs that MRC is associated with.
- READ_ONLY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
The name of the key that disables writing back to the cache file.
- READ_ONLY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
The name of the key that disables writing back to the cache file.
- READ_ONLY_KEY - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
The name of the key that disables writing back to the cache file.
- readDAX() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
- readURLs(File) - Static method in class edu.isi.pegasus.gridftp.PegasusGridFTP
- recursive - Variable in class edu.isi.pegasus.gridftp.RemoveCommand
- redirect(OutputStream, String) - Method in class edu.isi.pegasus.common.util.StreamGobbler
-
Sets the output stream to which to redirect the contents of the input stream.
- reduce(ADag) - Method in class edu.isi.pegasus.planner.refiner.ReduceEdges
-
Prunes redundant edges from the workflow.
- reduce(Graph) - Method in class edu.isi.pegasus.planner.refiner.ReduceEdges
-
Prunes redundant edges from the workflow.
- reduceDependency(GraphNode) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Reduces the number of edges between the nodes and it's parents.
- ReduceEdges - Class in edu.isi.pegasus.planner.refiner
-
An algorithm to reduce remove edges in the workflow, based on a DFS of a graph and doing least common ancestor tranversals to detect duplicate edges.
- ReduceEdges() - Constructor for class edu.isi.pegasus.planner.refiner.ReduceEdges
- reduceWorkflow(ADag, ReplicaCatalogBridge) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Reduces the workflow on the basis of the existence of lfn's in the replica catalog.
- reduceWorkflow(Graph, ReplicaCatalogBridge) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Reduces the workflow on the basis of the existence of lfn's in the replica catalog.
- REFINEMENT_CLUSTER - Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- REFINEMENT_REDUCE - Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- REFINEMENT_REGISTER - Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- REFINEMENT_SITE_SELECT - Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- REFINEMENT_STAGE - Static variable in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- Refiner - Interface in edu.isi.pegasus.planner.refiner
-
A first cut at a separate refiner interface.
- Refiner - Interface in edu.isi.pegasus.planner.transfer
-
The refiner interface, that determines the functions that need to be implemented to add various types of transfer nodes to the workflow.
- REFINER_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The name of the refiner for purposes of error logging
- REFINER_NAME - Static variable in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
The name of the refiner for purposes of error logging
- REFINER_NAME - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The name of the refiner for purposes of error logging
- RefinerFactory - Class in edu.isi.pegasus.planner.transfer.refiner
-
The factory class that loads an appropriate Transfer Refiner class, as specified by the properties.
- RefinerFactory() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.RefinerFactory
- refinerPreferenceForLocalTransferJobs(int) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Boolean indicating Refiner preference for transfer jobs to run locally.
- refinerPreferenceForLocalTransferJobs(int) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Boolean indicating Refiner preference for transfer jobs to run locally.
- refinerPreferenceForTransferJobLocation() - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Boolean indicating whether the Transfer Refiner has a preference for where a transfer job is run.
- refinerPreferenceForTransferJobLocation() - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Boolean indicating whether the Transfer Refiner has a preference for where a transfer job is run.
- Regex - Class in edu.isi.pegasus.planner.catalog.replica.impl
-
This class implements a replica catalog on top of a simple file with regular expression based entries, which contains two or more columns.
- Regex - Class in edu.isi.pegasus.planner.selector.replica
-
A replica selector that allows the user to specific regex expressions that can be used to rank various PFN's returned from the Replica Catalog for a particular LFN.
- Regex() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Default empty constructor creates an object that is not yet connected to any database.
- Regex(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.selector.replica.Regex
-
The overloaded constructor, that is called by load method.
- REGEX_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
- Regex.Rank - Class in edu.isi.pegasus.planner.selector.replica
-
A Data class that allows us to compile a regex expression and associate a rank value with it.
- register - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
- REGISTER_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
-
The prefix for the jobs which register the newly materialized files in the Replica Catalog.
- registerGridStart(String, GridStart) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Inserts an entry into the implementing class table.
- registerPOSTScript(String, POSTScript) - Method in class edu.isi.pegasus.planner.code.GridStartFactory
-
Inserts an entry into the implementing class table.
- REGISTRATION_UNIVERSE - Static variable in class edu.isi.pegasus.planner.refiner.Engine
- registrationIntroducedFor(String, String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
registrationIntroducedFor
- registrationIntroducedFor(String, String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- Regular - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for a regular file object.
- Regular() - Constructor for class edu.isi.pegasus.planner.invocation.Regular
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- Regular(String) - Constructor for class edu.isi.pegasus.planner.invocation.Regular
-
Constructs a regular file.
- RELEASE_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The release attribute for the uname
- REMOTE_INITIALDIR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that sets a remote initial dir for a condor globus job.
- REMOTE_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
-
The prefix for all remote transfer jobs
- REMOTE_SHOULD_TRANSFER_FILES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The corresponding remote kye name that designates that files should be transferred via Condor File Transfer mechanism.
- REMOTE_SHOULD_TRANSFER_FILES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The corresponding remote kye name that designates that files should be transferred via Condor File Transfer mechanism.
- REMOTE_UNIVERSE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The constant for the remote universe key.
- REMOTE_UNIVERSE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that denotes the remote condor universe key.
- REMOTE_WHEN_TO_TRANSFER_OUTPUT_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The corresponding name of the remote key that designated when to transfer output.
- REMOTE_WHEN_TO_TRANSFER_OUTPUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The corresponding name of the remote key that designated when to transfer output.
- RemoteTransfer - Class in edu.isi.pegasus.planner.transfer
-
A common class, that builds up the state from the properties to determine whether a user wants certain type of transfer jobs for particular site to run remotely.
- RemoteTransfer() - Constructor for class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The default constructor.
- RemoteTransfer(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The overloaded constructor.
- RemoteTransfer.TransferState - Class in edu.isi.pegasus.planner.transfer
-
An inner class that holds the state for a particular site,as to whether to execute transfers remotely or not.
- remove() - Method in class edu.isi.pegasus.planner.namespace.Namespace.EmptyIterator
-
Returns a false, as no removal
- remove() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.BottomUpIterator
-
Method is not supported.
- remove() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph.MapGraphIterator
-
Method is not supported.
- remove() - Method in class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
Removes a node from the graph.
- remove(GridFTPConnection, File) - Method in class edu.isi.pegasus.gridftp.RemoveCommand
- remove(Job) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Removes a particular job from the workflow.
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Removes all mappings for an LFN from the replica catalog.
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Removes all mappings for an LFN from the replica catalog.
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Removes all mappings for an LFN from the replica catalog.
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Removes all mappings for an LFN from the replica catalog.
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Removes all mappings for an LFN from the replica catalog.
- remove(String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Removes all mappings for an LFN from the replica catalog.
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML
-
Not yet implemented as yet.
- remove(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
Not yet implemented as yet.
- remove(String) - Method in interface edu.isi.pegasus.planner.catalog.SiteCatalog
-
Removes a site catalog entry matching the the handle.
- remove(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Removes a node from the Graph.
- remove(String) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Removes a node from the Graph.
- remove(String) - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Removes a node from the Graph.
- remove(String) - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Removes a node from the Graph.
- remove(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Removes all mappings for a set of LFNs.
- remove(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- remove(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Removes all mappings for a set of LFNs.
- remove(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Removes all mappings for a set of LFNs.
- remove(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Removes all mappings for a set of LFNs.
- remove(Set) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Removes all mappings for a set of LFNs.
- remove(Set) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Removes all mappings for a set of LFNs.
- REMOVE_DIR_EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The basename of the pegasus dirmanager executable.
- REMOVE_DIR_SUFFIX - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
Constant suffix for the names of the remote directory nodes.
- removeAllAttribute() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Removes all attributes associated with a PFN.
- removeAllJob() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Removes all values from the job list.
- removeAllStatCall() - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Removes all values from the stat list.
- removeAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Removes a specific attribute.
- removeByAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Removes all entries associated with a particular resource handle.
- removeByAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- removeByAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Removes all entries associated with a particular resource handle.
- removeByAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Removes all entries associated with a particular resource handle.
- removeByAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Removes all entries associated with a particular resource handle.
- removeByAttribute(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Removes all entries associated with a particular resource handle.
- removeByAttribute(String) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Removes all entries associated with a particular resource handle.
- removeByAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Removes all entries from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- removeByAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- removeByAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.JDBCRC
-
Removes all entries from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- removeByAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
Removes all entries from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- removeByAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
-
Removes all entries from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- removeByAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Removes all entries from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- removeByAttribute(String, Object) - Method in interface edu.isi.pegasus.planner.catalog.ReplicaCatalog
-
Removes all entries from the replica catalog where the PFN attribute is found, and matches exactly the object value.
- removeByLFN(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete all entries in the transformation catalog for a give logical transformation and/or on a resource and/or of a particular type
- removeByLFN(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Delete all entries in the transformation catalog for a give logical tranformation and/or on a resource and/or of a particular type
- removeByLFN(String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Delete all entries in the transformation catalog for a give logical transformation and/or on a resource and/or of a particular type
- removeByLFN(String, String, String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Delete all entries in the transformation catalog for a give logical transformation and/or on a resource and/or of a particular type
- removeByPFN(String, String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete all entries in the transformation catalog for pair of logical and physical transformation.
- removeByPFN(String, String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Delete all entries in the transformation catalog for pair of logical and physical transformation.
- removeByPFN(String, String, String, String, String, TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Delete all entries in the transformation catalog for pair of logical and physical transformation.
- removeByPFN(String, String, String, String, String, TCType) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Delete all entries in the transformation catalog for pair of logical and physical transformation.
- removeBySiteID(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete all entries on a particular resource from the transformation catalog.
- removeBySiteID(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Delete all entries on a particular resource from the transformation catalog.
- removeBySiteID(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Delete all entries on a particular resource from the transformation catalog.
- removeBySiteID(String) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Delete all entries on a particular resource from the transformation catalog.
- removeBySysInfo(SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Deletes entries from the catalog which have a particular system information.
- removeBySysInfo(SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Deletes entries from the catalog which have a particular system information.
- removeBySysInfo(SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Deletes entries from the catalog which have a particular system information.
- removeBySysInfo(SysInfo) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Deletes entries from the catalog which have a particular system information.
- removeByType(TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Database
-
Delete a particular type of transformation, and/or on a particular resource
- removeByType(TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
-
Delete a particular type of transformation, and/or on a particular resource
- removeByType(TCType, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Delete a particular type of transformation, and/or on a particular resource
- removeByType(TCType, String) - Method in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
Delete a particular type of transformation, and/or on a particular resource
- removeChild(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Removes a child linkage to the node.
- RemoveCommand - Class in edu.isi.pegasus.gridftp
-
Implements the rm command for remote GridFTP servers
- RemoveCommand(boolean, boolean) - Constructor for class edu.isi.pegasus.gridftp.RemoveCommand
- removeDestURL() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Removes a single destination url associated with the transfer.
- removeDir(GridFTPConnection, File) - Method in class edu.isi.pegasus.gridftp.RemoveCommand
- RemoveDirectory - Class in edu.isi.pegasus.planner.refiner
-
Ends up creating a cleanup dag that deletes the remote directories that were created by the create dir jobs.
- RemoveDirectory(ADag, PegasusBag, String) - Constructor for class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The overloaded constructor that sets the dag for which we have to generated the cleanup dag for.
- removeDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns a boolean indicating whether to remove remote directory information or not from the job.
- removeDirectoryKey(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns a boolean indicating whether to remove remote directory information or not from the job.
- removeFileServer(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This is a soft state remove, that removes a file server from a particular pool entry.
- removeFileURL(ReplicaCatalogEntry, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Default
-
A convenience function that determines whether we should be removing a file URL from replica selection or not.
- removeFileURL(String, String, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Default
-
A convenience function that determines whether we should be removing a file URL from replica selection or not.
- removeGridFtp(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Removes a grid ftp server from the soft state associated with the pool.
- removeGridFtp(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
This is a soft state remove, that removes a gridftp server from a particular pool entry.
- removeGridFtp(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This is a soft state remove, that removes a gridftp server from a particular pool entry.
- removeGridGateway(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
This is a soft state remove, that removes a GridGateway from a particular site.
- removeGridGateway(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
This is a soft state remove, that removes a GridGateway from a particular site.
- removeGridGateway(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
This is a soft state remove, that removes a GridGateway from a particular site.
- removeIn(Edge) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
remove a specified data dependency edge from this task
- removeIPFilesForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Remove the input files that were designated for transfer using Condor File Transfer Mechanism.
- removeJob(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Removes a specific job from the job list.
- removeJobmanager(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
It removes a jobmanager from the pool.
- removeJobManager(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.Abstract
-
This is a soft state remove, that removes a jobmanager from a particular pool entry.
- removeJobManager(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
This is a soft state remove, that removes a jobmanager from a particular pool entry.
- removeKey(Object) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Removes the key from the namespace.
- removeOut(Edge) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
remove a specified data dependency edge from this task
- removeOutputFilesForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Remove the output files that were designated for transfer using Condor File Transfer Mechanism.
- removeParent(GraphNode) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Removes a parent linkage to the node.
- removeResource(AuthenticateRequest) - Method in class edu.isi.pegasus.planner.refiner.Authenticate
-
It tries to remove a resource from the soft state of the pool.
- removeSourceURL() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Removes a single source url associated with the transfer.
- removeStatCall(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Removes a specific stat from the stat list.
- removeURL(Map) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Removes a single url from the map passed.
- renderedToExecutableForm() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a boolean indicating whether a job has been rendered to an executable form or not
- replaceJobs() - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
The relations/edges are changed in local graph structure.
- replacementKey(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Returns the replacement key that needs to be printed in .dag file in lieu of the key.
- replacementValue(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Returns the replacement value that needs to be printed in .dag file for a key.
- replaceProtocolFromURL(String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Replaces the gsiftp URL scheme from the url, and replaces it with the symlink url scheme and returns in a new object.
- replaceSourceProtocolFromURL(ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Replaces the SRM URL scheme from the url, and replaces it with the file url scheme and returns in a new object if replacement happens.
- Replica - Class in edu.isi.pegasus.planner.transfer.mapper.impl
-
This class connects to a Replica Catalog backend to determine where an output file should be placed on the output site.
- Replica() - Constructor for class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
The default constructor.
- REPLICA_CATALOG - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the handle to the replica catalog
- REPLICA_CATALOG_URL_KEY - Static variable in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The name of the URL key for the replica catalog impelementer to be picked up.
- REPLICA_REG_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that registers in the replica mechanism the materialized files.
- ReplicaCatalog - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes the Replica Catalog associated with the site.
- ReplicaCatalog - Interface in edu.isi.pegasus.planner.catalog
-
This interface describes a minimum set of essential tasks required from a replica catalog.
- ReplicaCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
The default constrcutor.
- ReplicaCatalog(String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
The overloaded constructor.
- ReplicaCatalogBridge - Class in edu.isi.pegasus.planner.refiner
-
This coordinates the look up to the Replica Location Service, to determine the logical to physical mappings.
- ReplicaCatalogBridge(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
The overloaded constructor.
- ReplicaCatalogEntry - Class in edu.isi.pegasus.planner.catalog.replica
-
The entry is a high-level logical structure representing the physical filename, the site handle, and optional attributes related to the PFN as one entity.
- ReplicaCatalogEntry() - Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Default constructor for arrays.
- ReplicaCatalogEntry(String) - Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Convenience constructor initializes the PFN.
- ReplicaCatalogEntry(String, String) - Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Convenience constructor initializes the PFN and the resource handle.
- ReplicaCatalogEntry(String, Map) - Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Standard constructor initializes the PFN and arbitrary attributes.
- ReplicaCatalogException - Exception in edu.isi.pegasus.planner.catalog.replica
-
Class to notify of failures.
- ReplicaCatalogException() - Constructor for exception edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogException
- ReplicaCatalogException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogException
-
Constructs a
ReplicaCatalogException
with the specified detailed message. - ReplicaCatalogException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogException
-
Constructs a
ReplicaCatalogException
with the specified detailed message and a cause. - ReplicaCatalogException(Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogException
-
Constructs a
ReplicaCatalogException
with the specified just a cause. - ReplicaFactory - Class in edu.isi.pegasus.planner.catalog.replica
-
This factory loads a replica catalog, as specified by the properties.
- ReplicaFactory() - Constructor for class edu.isi.pegasus.planner.catalog.replica.ReplicaFactory
- ReplicaLocation - Class in edu.isi.pegasus.planner.classes
-
A Data Class that associates a LFN with the PFN's.
- ReplicaLocation() - Constructor for class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Default constructor.
- ReplicaLocation(String, Collection) - Constructor for class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Overloaded constructor.
- ReplicaLocation(String, List) - Constructor for class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Overloaded constructor.
- replicaLocationIterator() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns an iterator to the list of
ReplicaLocation
objects stored in the store. - ReplicaSelector - Interface in edu.isi.pegasus.planner.selector
-
A prototypical interface for a replica selector.
- ReplicaSelectorFactory - Class in edu.isi.pegasus.planner.selector.replica
-
A factory class to load the appropriate type of Replica Selector, as specified by the user at runtime in properties.
- ReplicaSelectorFactory() - Constructor for class edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactory
- ReplicaSelectorFactoryException - Exception in edu.isi.pegasus.planner.selector.replica
-
Class to notify of failures while instantiating ReplicaSelector implementations.
- ReplicaSelectorFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
-
Constructs a
ReplicaSelectorFactoryException
with no detail message. - ReplicaSelectorFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
-
Constructs a
ReplicaSelectorFactoryException
with the specified detailed message. - ReplicaSelectorFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
-
Constructs a
ReplicaSelectorFactoryException
with the specified detailed message and a cause. - ReplicaSelectorFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.selector.replica.ReplicaSelectorFactoryException
-
Constructs a
ReplicaSelectorFactoryException
with the specified detailed message and a cause. - ReplicaStore - Class in edu.isi.pegasus.planner.classes
-
A Replica Store that allows us to store the entries from a replica catalog.
- ReplicaStore() - Constructor for class edu.isi.pegasus.planner.classes.ReplicaStore
-
Default constructor.
- ReplicaStore(Map) - Constructor for class edu.isi.pegasus.planner.classes.ReplicaStore
-
Overloaded constructor.
- REQUEST_CPUS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The Condor Key designating the numnber of cpu's to request.
- REQUEST_DISK_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The Condor Key designating the amount of disk to request.
- REQUEST_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- REQUEST_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- REQUEST_MEMORY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The Condor Key designating the amount of memory to request.
- requestInvalid() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Checks if the request is invalid or not.
- REQUIREMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that denotes the requirements of the job.
- requiresCredentials() - Method in class edu.isi.pegasus.planner.classes.Job
-
A boolean method indicating whether credentials are associated with the job
- requiresToSetDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns a boolean indicating whether we need to set the directory for the job or not.
- requiresToSetDirectory(Job) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns a boolean indicating whether we need to set the directory for the job or not.
- reset() - Method in interface edu.isi.pegasus.common.logging.Event
-
Reset the internal log message buffer associated with the event
- reset() - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Reset the internal log message buffer associated with the event
- reset() - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Reset the internal log message buffer associated with the event
- reset() - Method in class edu.isi.pegasus.common.util.PegasusURL
-
Resets the internal member variables
- reset() - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Resets the internal invoke map.
- reset() - Method in interface edu.isi.pegasus.planner.code.CodeGenerator
-
Resets the Code Generator implementation.
- reset() - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Resets the Code Generator implementation.
- reset() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Resets the Code Generator implementation.
- reset() - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Not implemented
- reset() - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
Not implemented
- reset() - Method in class edu.isi.pegasus.planner.code.generator.Stampede
- reset() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Resets the internal buffer
- reset() - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
Resets the internal counters.
- reset() - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Resets the internal store.
- reset() - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Resets the internal data structures.
- reset(boolean) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Resets the internal counters to zero.
- reset(Graph) - Method in class edu.isi.pegasus.planner.refiner.ReduceEdges
-
Resets internal depth and color counters associated with the nodes in the workflow, before doing any graph traversals.
- resetCredentialTypes() - Method in class edu.isi.pegasus.planner.classes.Job
-
Resets the credential types required by a job.
- resetEdges() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Resets all the dependencies in the Graph, while preserving the nodes.
- resetEdges() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Resets all the dependencies in the Graph, while preserving the nodes.
- resetEdges() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Resets all the dependencies in the Graph, while preserving the nodes.
- resetEdges() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Reset all the edges associated with this node.
- resetEdges() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Resets all the dependencies in the Graph, while preserving the nodes.
- resetFileServers() - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Resets the internal collection of file servers
- resetLFNAddOnCache() - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
Resets the internal cache.
- resetNotifications() - Method in class edu.isi.pegasus.planner.classes.Job
-
Resets the notifications associated with the job
- resetProfiles() - Method in class edu.isi.pegasus.planner.classes.Job
-
Resets all the profiles associated with the job.
- resetStageInMap(Map<String, BalancedCluster.PoolTransfer>, Implementation, int, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Signals that the traversal of the workflow is done.
- resetStageInMap(Map<String, Bundle.PoolTransfer>, Implementation, Map<String, Job>, int, boolean, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Resets the stage in map and adds the stage in jobs for each site per level.
- resetStageInMaps() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Resets the local and remote stage out maps.
- resetStageInMaps() - Method in class edu.isi.pegasus.planner.transfer.refiner.Cluster
-
Resets the stage in map and adds the stage in jobs for each site per level.
- resetStageOutMap(Map<String, BalancedCluster.PoolTransfer>, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Resets a single map
- resetStageOutMap(Map<String, Bundle.PoolTransfer>, boolean) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Resets a single map
- resetStageOutMaps() - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster
-
Resets the local and remote stage out maps.
- resetStageOutMaps() - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle
-
Resets the local and remote stage out maps.
- resetStores() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Resets the replica and transformation stores;
- resource - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- resource - Variable in class edu.isi.pegasus.planner.client.TCClient
- RESOURCE_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The class ad to store the execution pool at which the job is run.
- RESOURCE_HANDLE - Static variable in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
The (reserved) attribute name used for the resource handle.
- Restricted - Class in edu.isi.pegasus.planner.selector.replica
-
A replica selector, that allows the user to specify good sites and bad sites for staging in data to a compute site.
- Restricted(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.selector.replica.Restricted
-
The overloaded constructor, that is called by load method.
- retrieveFromCache(String) - Method in class edu.isi.pegasus.planner.refiner.ReplicaCatalogBridge
-
Retrieves a location from the cache table, that contains the contents of the cache files specified at runtime.
- retrieveLocationForWorkerPackageFromTC(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Retrieves the location for the pegasus worker package from the TC for a site
- retrieveProfilesFromProperties() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Retrieves profiles from the properties
- retrieveProfilesFromProperties(CommonProperties) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Retrieves profiles from the properties
- RETRY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that determines how many times DAGMAN should be retrying the job.
- RETRY_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The planner utility that needs to be called as a prescript.
- RETRY_LOGICAL_NAME - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The planner utility that needs to be called as a prescript.
- RFT - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- RFT - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
- rm(String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
Remove path
- RM - Class in edu.isi.pegasus.planner.refiner.cleanup
-
Use's RM to do removal of the files on the remote sites.
- RM() - Constructor for class edu.isi.pegasus.planner.refiner.cleanup.RM
-
The default constructor.
- rmdir(String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
Remove directory path
- ROOT_UUID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The key for UUID of the workflow.
- ROOT_WF_UUID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The classad for the root workflow uuid
- ROOT_WORKFLOW_UUID_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
-
The property key designated the root workflow uuid.
- RoundRobin - Class in edu.isi.pegasus.planner.selector.site
-
This ends up scheduling the jobs in a round robin manner.
- RoundRobin - Class in edu.isi.pegasus.planner.selector.transformation
-
This implementation of the Selector select a transformation from a list in a round robin fashion.
- RoundRobin() - Constructor for class edu.isi.pegasus.planner.selector.site.RoundRobin
-
The default constructor.
- RoundRobin() - Constructor for class edu.isi.pegasus.planner.selector.transformation.RoundRobin
- RoundRobin.NameValue - Class in edu.isi.pegasus.planner.selector.site
-
A inner name value class that associates a string with an int value.
- run() - Method in class edu.isi.pegasus.common.util.StreamGobbler
-
The main method of the gobbler, that does all the work.
- run() - Method in class edu.isi.pegasus.planner.invocation.SimpleServerThread
- run() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
The runnable method of the thread, that is called when the thread is started.
- run(GridFTPURL) - Method in class edu.isi.pegasus.gridftp.Command
- run(GridFTPURL) - Method in class edu.isi.pegasus.gridftp.ListCommand
- run(GridFTPURL) - Method in class edu.isi.pegasus.gridftp.MakeDirectoryCommand
- run(GridFTPURL) - Method in class edu.isi.pegasus.gridftp.RemoveCommand
- RunDirectoryFilenameFilter - Class in edu.isi.pegasus.planner.common
-
A filename filter for identifying the run directory
- RunDirectoryFilenameFilter - Class in edu.isi.pegasus.planner.parser.pdax
-
A filename filter for identifying the run directory
- RunDirectoryFilenameFilter() - Constructor for class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
- RunDirectoryFilenameFilter() - Constructor for class edu.isi.pegasus.planner.parser.pdax.RunDirectoryFilenameFilter
- runInWorkDirectory() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns whether a job should be run in the work directory or not.
- RUNNING_JOBS - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the number of running jobs attribute.
- runPlanner() - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
The main function which calls the other engines and does the necessary work.
- RUNTIME_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key when associated with a transformation in the transformation catalog gives expected runtime in seconds.
- RUNTIME_PROFILE_KEY - Static variable in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
The pegasus profile key that gives us the expected runtime.
- runTPTOnRemoteSite(String, int) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Returns whether the third party transfers for a particular site are to be run on the remote site or the submit host.
- runTPTOnRemoteSite(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Returns whether the third party transfers for a particular site are to be run on the remote site or the submit host.
- runTransferOnLocalSite(Refiner, String, String, int) - Method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Returns whether to run a transfer job on local site or not.
- runTransferOnLocalSite(String, String, int) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Returns whether to run a transfer job on local site or not.
- runTransferRemotely(String, int) - Method in class edu.isi.pegasus.planner.transfer.AbstractRefiner
-
Returns whether a Site prefers transfers to be run on it i.e remote transfers enabled.
- runTransferRemotely(String, int) - Method in interface edu.isi.pegasus.planner.transfer.Refiner
-
Returns whether a Site prefers transfers to be run on it i.e remote transfers enabled.
S
- s3 - edu.isi.pegasus.common.credential.CredentialHandler.TYPE
- S3_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
- S3CFG - Class in edu.isi.pegasus.common.credential.impl
-
A convenience class that allows us to determine the path to the user s3cfg file.
- S3CFG - Static variable in class edu.isi.pegasus.planner.namespace.ENV
-
The name of the environment variable that specifies the s3cfg path
- S3CFG() - Constructor for class edu.isi.pegasus.common.credential.impl.S3CFG
-
The default constructor.
- S3CFG_FILE_VARIABLE - Static variable in class edu.isi.pegasus.common.credential.impl.S3CFG
-
The name of the environment variable that specifies the path to the s3cfg file.
- S3CFG_FILE_VARIABLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
- S3CFG_PEGASUS_PROFILE_KEY - Static variable in class edu.isi.pegasus.common.credential.impl.S3CFG
- sanitize(ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Sanitizes a tuple .
- sanitize(List) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Sanitizes a tuple list .
- sanitizePath(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
A small utility method that santizes the url, converting it from relative to absolute.
- sanitizePathForProperty(Properties, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Santizes the value in the properties .
- SANITY_CHECK_ERROR_MESSAGE_PREFIX - Static variable in class edu.isi.pegasus.planner.selector.replica.Local
-
Sanity Check Error Message.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.client.CPlanner
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.client.RankDAX
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheck(File) - Static method in class edu.isi.pegasus.planner.ranking.GetDAX
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheckOnDirectory(File) - Static method in class edu.isi.pegasus.common.logging.LogManager
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheckOnFile(File) - Static method in class edu.isi.pegasus.common.logging.LogManager
-
Checks the destination location for existence, if it can be created, if it is writable etc.
- sanityCheckOnProperties() - Method in class edu.isi.pegasus.planner.client.Executable
-
Does a sanity check on the properties to make sure that all the required properties are loaded.
- sanityCheckOnVersion(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Sanity check on the version that this parser works on.
- SC_PARSER3_CLASS - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
-
The SC Parser classname
- SC_VERSION_2_0_0 - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
- SC_VERSION_3_0_0 - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
- SC_VERSION_4_0_0 - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
- SC_XML_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- SC_XML3_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- ScannerException - Exception in edu.isi.pegasus.planner.parser
-
This class is used to signal errors while scanning or parsing.
- ScannerException(int, String) - Constructor for exception edu.isi.pegasus.planner.parser.ScannerException
- ScannerException(LineNumberReader, String) - Constructor for exception edu.isi.pegasus.planner.parser.ScannerException
- SCClient - Class in edu.isi.pegasus.planner.client
-
A client to convert site catalog between different formats.
- SCClient() - Constructor for class edu.isi.pegasus.planner.client.SCClient
-
The default constructor.
- schedule(ADag, List) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Schedules the workflow using the heft.
- schedule(ADag, List, String) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Schedules the workflow according to the HEFT algorithm.
- SCHEDULED_SITE - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The site where the job is scheduled.
- scheduleJob(long, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Processor
-
Schedules a job on to a processor.
- scheduleJob(long, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Site
-
Schedules a job to the site.
- scheduleJob(String, long, long) - Method in class edu.isi.pegasus.planner.selector.site.heft.Algorithm
-
Schedules a job to a site.
- scheduleJobs(ADag, List) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
It schedules a list of jobs on the execution pools by calling out to the site selector specified.
- SCHEDULER_TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
- SCHEDULER_UNIVERSE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
- SCHEDULER_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for scheduler universe.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
The "not-so-official" location URL of the VDLx schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.dax.ADAG
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
The "not-so-official" location URL of the invocation record definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
The "not-so-official" location URL of the VDLx schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
The "not-so-official" location URL of the Site Catalog Schema.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
The "not-so-official" location URL of the DAX schema definition.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
The "not-so-official" location URL of the Site Catalog Schema.
- SCHEMA_LOCATION - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
The "not-so-official" location URL of the Site Catalog Schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
The "official" namespace URI of the site catalog schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
The "official" namespace URI of the site catalog schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
uri namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.client.DAXValidator
-
URI namespace for DAX schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.dax.ADAG
-
The "official" namespace URI of the site catalog schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
The "official" namespace URI of the invocation record schema.
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.ConfigXmlParser
-
uri namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
URI namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
uri namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.PDAXParser
-
URI namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
uri namespace
- SCHEMA_NAMESPACE - Static variable in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
uri namespace
- SCHEMA_NAMESPACE_XSI - Static variable in class edu.isi.pegasus.planner.dax.ADAG
-
XSI SCHEMA NAMESPACE
- SCHEMA_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
The version to report.
- SCHEMA_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
The version to report.
- SCHEMA_VERSION - Static variable in class edu.isi.pegasus.planner.dax.ADAG
-
The version to report.
- searchMDS(LdapContext, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Still Thinking how to eable this option.
- SECONDARY_METRICS_SERVER_URL_ENV_VARIABLE - Static variable in class edu.isi.pegasus.planner.code.generator.Metrics
-
The name of the environment variable that overrides the default server url
- SEED - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SEED_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SEED_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- SEED_NAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SEED_NAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- selectFileServer(FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Selects a random file server and returns it matching an operation type.
- selectGridFtp(ArrayList) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Return a random gridftp url from the list of gridftp url's.
- selectGridFTP(boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns a gridftp server from the list of gridftp servers associated with the site.
- selectGridGateway(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Selects a grid gateway object corresponding to a job type.
- selectGridGateway(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Selects a grid gateway object corresponding to a job type.
- selectHeadNodeScratchSharedFileServer(FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
A convenience method to select the FileServer for the shared scratch space on the HeadNode.
- selectHeadNodeScratchSharedFileServerURLPrefix(FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Deprecated.should be removed
- selectJobManager(String, boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns a selected jobmanager corresponding to a particular VDS universe.
- selectLRC(boolean) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns an LRC from the list of LRCs associated with the site.
- selectLRC(ArrayList) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Return a random lrc url from the list of lrc url's.
- selector - edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- selector - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- Selector - Class in edu.isi.pegasus.planner.namespace
-
The selector namespace object.
- Selector() - Constructor for class edu.isi.pegasus.planner.namespace.Selector
-
The default constructor.
- Selector(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Selector
-
The overloaded constructor.
- SELECTOR - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- SELECTOR - Static variable in class edu.isi.pegasus.planner.classes.Profile
- selectRandomSite(List) - Method in class edu.isi.pegasus.planner.selector.site.Random
-
The random selection that selects randomly one of the records returned by the transformation catalog.
- selectReplica(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Default
-
This chooses a location amongst all the locations returned by the replica location service.
- selectReplica(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Local
-
Selects a random replica from all the replica's that have their site handle set to local and the pfn's start with a file url scheme.
- selectReplica(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Regex
-
This chooses a location amongst all the locations returned by the replica location service.
- selectReplica(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Restricted
-
This chooses a location amongst all the locations returned by the replica location service.
- selectReplica(ReplicaLocation, String, boolean) - Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector
-
Selects a single replica amongst all the replicas returned by the implementing Replica Mechanism.
- selectReplicaCatalog() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Selects a Random ReplicaCatalog.
- selectReplicaCatalog() - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Selects a Random ReplicaCatalog.
- selectReplicas(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Default
-
This chooses a location amongst all the locations returned by the Replica Mechanism.
- selectReplicas(ReplicaLocation, String, boolean) - Method in class edu.isi.pegasus.planner.selector.replica.Local
-
This chooses a location amongst all the locations returned by the Replica Mechanism.
- selectReplicas(ReplicaLocation, String, boolean) - Method in interface edu.isi.pegasus.planner.selector.ReplicaSelector
-
Selects a replica amongst all the replicas returned by the implementing Replica Mechanism.
- selectStorageFileServerForStageout(FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
A convenience method that selects a file server for staging the data out to a site.
- selectTCEntry(List, Job, String) - Method in class edu.isi.pegasus.planner.refiner.InterPoolEngine
-
Calls out to the transformation selector to select an entry from a list of valid transformation catalog entries.
- selectWorkdir(WorkDir) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
Returns the path to the execution mount point (The Workdir).
- send(PlannerMetrics, String) - Method in class edu.isi.pegasus.planner.code.generator.SendMetrics
-
Sends the planner metrics to the metrics server
- SendMetrics - Class in edu.isi.pegasus.planner.code.generator
-
A Send metrics class that is used to send metrics to the metrics server using HTTP POST methods
- SendMetrics(PlannerMetrics, String) - Constructor for class edu.isi.pegasus.planner.code.generator.SendMetrics
- sendMetricsAsynchronously(PlannerMetrics, String) - Method in class edu.isi.pegasus.planner.code.generator.Metrics
-
Sends the planner metrics to the metrics server asynchrnously with a timeout of 5 seconds
- SendMetricsResult - Class in edu.isi.pegasus.planner.code.generator
- SendMetricsResult() - Constructor for class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- SendMetricsResult(int, String) - Constructor for class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- sendMetricsSynchronously(PlannerMetrics, String) - Method in class edu.isi.pegasus.planner.code.generator.Metrics
-
Sends the planner metrics to the metrics server
- Separator - Class in edu.isi.pegasus.common.util
-
This class solely defines the separators used in the textual in- and output between namespace, name and version(s).
- Separator() - Constructor for class edu.isi.pegasus.common.util.Separator
- Separator2Test - Class in edu.isi.pegasus.common.util
-
This is the test program for the Separator class.
- Separator2Test() - Constructor for class edu.isi.pegasus.common.util.Separator2Test
- SeparatorTest - Class in edu.isi.pegasus.common.util
-
This is the test program for the Separator class.
- SeparatorTest() - Constructor for class edu.isi.pegasus.common.util.SeparatorTest
- SEQ_EXEC_CLASS - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.JobAggregatorFactory
-
The name of the class in this package, that corresponds to seqexec.
- SeqExec - Class in edu.isi.pegasus.planner.cluster.aggregator
-
This class aggregates the smaller jobs in a manner such that they are launched at remote end, sequentially on a single node using seqexec.
- SeqExec() - Constructor for class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
The default constructor.
- SEQEXEC_INDEX - Static variable in class edu.isi.pegasus.planner.code.GridStartFactory
-
The index in constant arrays for SeqExec
- SEQEXEC_PROGRESS_REPORT_SUFFIX - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
The suffix to be applied to seqexec progress report file.
- serialVersionUID - Static variable in exception edu.isi.pegasus.gridftp.DirectoryNotEmptyException
- serialVersionUID - Static variable in exception edu.isi.pegasus.gridftp.DirectoryRemovalException
- serialVersionUID - Static variable in exception edu.isi.pegasus.gridftp.FileExistsException
- serialVersionUID - Static variable in exception edu.isi.pegasus.gridftp.GridFTPException
- serialVersionUID - Static variable in exception edu.isi.pegasus.gridftp.NoSuchFileException
- serialVersionUID - Static variable in exception edu.isi.pegasus.gridftp.PermissionDeniedException
- set(int) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Sets a type of transfer to be third party.
- set(int) - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Sets a type of transfer to be third party.
- set(String, boolean) - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
Sets a feature while capturing failed features right here.
- set(String, boolean) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Sets a feature while capturing failed features right here.
- SET_XBIT_PREFIX - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The prefix for the jobs which are added to set X bit for the staged executables.
- setAbortOnFirstJobFailure(boolean) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Setter method to indicate , failure on first consitutent job should result in the abort of the whole aggregated job.
- setAbortOnFirstJobFailure(boolean) - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
Setter method to indicate , failure on first consitutent job should result in the abort of the whole aggregated job.
- setAbortOnFirstJobFailure(boolean) - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
Setter method to indicate , failure on first consitutent job should result in the abort of the whole aggregated job.
- setAbstractChildID(String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Sets the abstract child id associated with the edge.
- setAbstractParentID(String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Sets the abstract parent id associated with the edge.
- setAccessTime(Date) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setApplicationMetrics(PegasusProperties) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the app metrics that need to be forwarded.
- setApplicationMetrics(Properties) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the app metrics that need to be forwarded.
- setArch(Arch) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Sets the architecture of the system.
- setArchitecture(SysInfo.Architecture) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the architecture of the site.
- setArchitecture(SysInfo.Architecture) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the architecture of the nodes that this grid gateway talks to.
- setArchitecture(SysInfo.Architecture) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the architecture of the site.
- setArchitecture(SysInfo.Architecture) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the architecture of the site.
- setArchitecture(Executable.ARCH) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the architecture the executable is compiled for
- setArchitecture(Architecture) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setArchMode(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setArguments(Arguments) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setArguments(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the argument string with which the job has to be invoked.
- setAttribute(String, Object) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Adds a new or overwrites an existing attribute.
- setAttribute(Map) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Replaces all existing attributes with new attributes.
- setAuthentication(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the authenticate flag to the value passed.
- setBag(Bag) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Sets the bag of objects associated with the node.
- setBasenamePrefix(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the basename prefix for the per workflow files.
- setBaseSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the submit directory for the workflow.
- setBaseSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the base submit directory.
- setBaseSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the base submitdirectory where the submit files are to be generated.
- setBlocks(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setBlockSize(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setBufferSize(int) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
Set buffer size i.e.
- setCacheFiles(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the caches files.
- setCacheFiles(Set) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the caches files.
- setCallback(Callback) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Sets the callback handler for this parsing instance.
- setChild(String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Sets the child of the edge.
- setChild(String) - Method in class edu.isi.pegasus.planner.dax.Edge
- setChildren(Collection<GraphNode>) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
It sets the children to the node.
- setClassName(String) - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Sets the fully-qualified class name to load.
- setCleanup(PlannerOptions.CLEANUP_OPTIONS) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the cleanup option for the planner.
- setCleanup(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the cleanup option for the planner.
- setClusteringTechnique(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the clustering option.
- setCode(int) - Method in class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- setColor(int) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Sets the color of the node to the color specified
- setConfFile(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the property file pointed to by the --conf option passed to the planner
- setContact(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the contact string for the Grid gateway
- setContent(GraphNodeContent) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Sets the content associated with the node.
- setCoreFlag(boolean) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor.
- setCost(long) - Method in class edu.isi.pegasus.planner.provisioner.Edge
- setCount(int) - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor.
- setCount(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Set the count of the workflow, that was specified in the DAX.
- setCount(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Set the count of the workflow, that was specified in the DAX.
- setCreationTime(Date) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setCredential(GSSCredential) - Method in class edu.isi.pegasus.planner.refiner.Authenticate
-
Sets the credential that has to be used for authentication.
- setDAGFile(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Sets the DAG file
- setDAGLFN(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Sets the DAG file LFN
- setData(Data) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Conversion accessor.
- setData(String) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setDataConfiguration(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
The data configuration
- setDateFormat(String) - Method in class edu.isi.pegasus.common.util.Currently
-
Accessor: Sets the default timestamp format for all queues.
- setDateFormat(SimpleDateFormat) - Method in class edu.isi.pegasus.common.util.Currently
-
Accessor: Sets the default timestamp format for all queues.
- setDAX(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the DAX.
- setDAX(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the DAX that has to be worked on by the planner.
- setDAXCallback(Callback) - Method in interface edu.isi.pegasus.planner.parser.dax.DAXParser
-
Set the DAXCallback for the parser to call out to.
- setDAXCallback(Callback) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Set the DAXCallback for the parser to call out to.
- setDAXCallback(Callback) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Set the DAXCallback for the parser to call out to.
- setDAXFile(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Sets the DAX file
- setDAXLFN(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Sets the DAX file LFN
- setDAXMTime(File) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the mtime (last modified time) for the DAX.
- setDAXMTime(File) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the mtime (last modified time) for the DAX.
- setDAXMTime(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the mtime (last modified time) for the DAX.
- setDAXVersion(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the dax version
- setDAXVersion(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the dax version
- setDepth(int) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
Sets the depth associated with the node.
- setDepth_ResMap(List) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
A BFS implementation to set depth value (roots have depth 1) and also to populate mResMap ,mResMapLeaves,mResMapRoots which contains all the jobs that are assigned to a particular resource
- setDerivation(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setDerivation(String, String, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the various attributes of underlying derivation.
- setDescriptor(int) - Method in class edu.isi.pegasus.planner.invocation.Descriptor
-
Accessor.
- setDescriptor(int) - Method in interface edu.isi.pegasus.planner.invocation.HasDescriptor
-
Accessor: Sets the descriptor number of a file object.
- setDescriptor(int) - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Accessor.
- setDirectory(Directory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets a directory corresponding to a particular type
- setDirectory(String) - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Sets the directory in which the dag needs to execute.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Sets the directory in which the dag needs to execute.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Setter method to set the name of the job.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Sets the directory where the stdin files are to be generated.
- setDirectory(String) - Method in class edu.isi.pegasus.planner.refiner.NodeCollapser
-
Sets the directory where the stdin files are to be generated.
- setDocumentLocator(Locator) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- setDocumentLocator(Locator) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Obtains the document locator from the parser.
- setDocumentLocator(Locator) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Overrides the empty implementation provided by Default Handler and sets the locator variable for the locator.
- setDomainName(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setDuration(double) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the user.
- setDuration(double) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setDuration(double) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setDVName(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the derivation name of the underlying derivation.
- setDVNamespace(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the derivation namespace to be associated with the job.
- setDVVersion(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the version of the underlying derivation.
- setElementRelation(char, Invocation, Invocation) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method sets the relations between the currently finished XML element and its containing element in terms of Java objects.
- setElementRelation(String, Object, Object) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
This method sets the relations between the currently finished XML element(child) and its containing element in terms of Java objects.
- setElementRelation(String, Object, Object) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
This method sets the relations between the currently finished XML element and its containing element in terms of Java objects.
- setElementRelation(String, Object, Object) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
This method sets the relations between the currently finished XML element and its containing element in terms of Java objects.
- setElementRelation(String, Object, Object) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
This method sets the relations between the currently finished XML element(child) and its containing element in terms of Java objects.
- setEndTime(double) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Set the end time for the planning operation.
- setEndTime(Date) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Set the end time for the planning operation.
- setEnvironment(Environment) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setError(int) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Accessor.
- setError(int) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setErrorMessage(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Set the error message that we want to log
- setErrorWriter(OutputStream) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Certains levels like FATAL, ERROR and WARN can be set to log to a different stream, than the default stream used for writing other messages.
- setErrorWriter(String) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Certains levels like FATAL, ERROR and WARN can be set to log to a different stream, than the default stream used for writing other messages.
- setEvent(String, String, String) - Method in interface edu.isi.pegasus.common.logging.Event
-
Set the event that is to be associated with the log messages.
- setEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Set the event that is to be associated with the log messages.
- setEvent(String, String, String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Set the event that is to be associated with the log messages.
- setEvent(String, Map<String, String>) - Method in interface edu.isi.pegasus.common.logging.Event
-
Adds the event that is to be associated with the log messages onto an internal stack
- setEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Adds the event that is to be associated with the log messages onto an internal stack
- setEvent(String, Map<String, String>) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Adds the event that is to be associated with the log messages onto an internal stack
- setExecutable() - Method in class edu.isi.pegasus.planner.dax.File
-
Mark the file as executable.
- setExecutable(boolean) - Method in class edu.isi.pegasus.planner.dax.File
-
Mark the file as executable.
- setExecutable(StatCall) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setExecutable(String) - Method in class edu.isi.pegasus.planner.invocation.Arguments
-
Accessor.
- setExecutable(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Accessor.
- setExecutableForTransfer() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Adds the executable for transfer via the condor file transfer mechanism.
- setExecutableStagingForJob(boolean) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the executable staging flag in the job to the value passed.
- setExecutionSites(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the names of the execution sites where the concrete workflow can be run.
- setExecutionSites(Collection) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the names of the execution sites where the concrete workflow can be run.
- setExecutionSites(Collection) - Method in class edu.isi.pegasus.planner.common.UserOptions
-
Sets the execution sites.
- setExitcode(int) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the exitcode for the planner.
- setExitCode(short) - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Accessor.
- setFile(File) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setFilename(String) - Method in interface edu.isi.pegasus.planner.invocation.HasFilename
-
Accessor: Sets the name of an file object.
- setFilename(String) - Method in class edu.isi.pegasus.planner.invocation.Regular
-
Accessor.
- setFilename(String) - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Accessor.
- setFileOptional() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the optional flag denoting the file to be optional to true.
- setFileServers(List<FileServer>) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Sets the list of FileServers that can access this directory.
- setFlowTimestamp(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the flow timestamp for the workflow.
- setFlowTimestamp(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the flow timestamp for the workflow.
- setForce(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the force option for the planner.
- setForceReplan(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the force replan option
- setForCleanup() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the cleanup flag denoting the file can be cleaned up to true.
- setForCleanup(boolean) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the cleanup flag to the value passed
- setForPlannerUse(PegasusProperties, PlannerOptions) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
A setter method that is to be set to use getWorkDirectory functions, correctly.
- setFreeSize(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Sets the free directory size
- setFrom(Node) - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
set the 'from' task
- setGID(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setGID(int) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the glibc version on the site.
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the glibc version on the site.
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the glibc version on the site.
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the glibc version on the site.
- setGlibc(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Sets the glibc version of the system
- setGlibc(String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the glibc this executable is compiled for
- setGridFTPBandwidthInfo(GridFTPBandwidth) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
It fills information in the mBandWidths ArrayList.
- setGroup(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setGroup(String) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setHandle(String) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setHeadNodeFS(HeadNodeFS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the headnode filesystem.
- setHelp(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the help option for the planner.
- setHostAddress(InetAddress) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setHostname(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setID(String) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It sets the id of the partition.
- setIdleNodes(int) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the number of idle nodes that this grid gateway talks to.
- setIdleNodes(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the number of idle nodes that this grid gateway talks to.
- setIndex(int) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It sets the index associated with this partition to the value passed.
- setIndex(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Set the index of the workflow, that was specified in the DAX.
- setIndex(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Set the index of the workflow, that was specified in the DAX.
- setInfo(int, Object) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Sets an attribute associated with the remote site.
- setInfo(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
This method sets the info about gridftpbw based on the gridftpbwkey
- setInfo(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Sets an attribute associated with the grid ftp server.
- setInfo(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Sets an attribute associated with the jobmanager.
- setInfo(int, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Sets an attribute associated with the work directory.
- setInheritedRCFiles(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the inherited RC Files.
- setInheritedRCFiles(Set) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the inherited RC Files.
- setINode(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setInputBlocks(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setInputDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Set the input directory.
- setInputFiles(Set<PegasusFile>) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the input files associated with the job.
- setInputSize(long) - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor.
- setInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable
-
set the installed flag on the executable.
- setInstalled(boolean) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the installed flag on the executable.
- setInterface(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setInternalMountPoint(InternalMountPoint) - Method in class edu.isi.pegasus.planner.catalog.site.classes.DirectoryLayout
-
Sets the internal mount point for the directory.
- setInvoluntarySwitches(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of involuntary context switches.
- setJob(int, Job) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Overwrites a job at a certain position.
- setJob(Collection) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Overwrites internal list with an external list representing jobs.
- setJobAggregator(JobAggregator) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Sets the JobAggregator that created this aggregated job.
- setJobManager(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the remote jobmanager on which the job has to run.
- setJobName(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
It sets the name of the job that is associated with the profiles contained in this placeholder.
- setJobnamePrefix(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the job prefix to be used while constructing the job names.
- setJobStatus(JobStatus) - Method in class edu.isi.pegasus.planner.invocation.Status
-
Accessor.
- setJobType(int) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the type of the job.
- setJobType(GridGateway.JOB_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the type of jobs that run via this grid gateway.
- setKey(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the connection key.
- setKey(String) - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Sets the key associated with this tuple.
- setKey(String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Accessor.
- setLabel(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the label for the workflow.
- setLabel(String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Sets the label for the workflow.
- setLabel(String) - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Sets the DAXlabel.
- setLabel(String) - Method in class edu.isi.pegasus.planner.dax.Edge
- setLabelKey(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAX2LabelGraph
-
Set the profile key that is to be used to pick up the labels.
- setLabelKey(String) - Static method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Sets the label key that is to be associated with the bag.
- setLdapConnectionEnv(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
-
Enables a user to set new or overide existing connection settings to the MDS.
- setLdapSearchConstraints() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- setLevel(int) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the debug level.
- setLevel(int) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the debug level.
- setLevel(int) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets the debug level.
- setLevel(int) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the level for the job.
- setLevel(int) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Sets a logging level.
- setLevel(int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the debug level.
- setLevel(int, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the debug level.
- setLevel(int, boolean) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets the debug level.
- setLevel(Level) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the debug level.
- setLevel(Level) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the debug level.
- setLevel(Level) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets the debug level.
- setLevel(Level, boolean) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets the debug level.
- setLFN(String) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
It sets the logical filename of the file that is being transferred.
- setLFN(String) - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Sets the LFN.
- setLFN(String) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setLink(File.LINK) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the file linkage
- setLinkage(PegasusFile.LINKAGE) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the linkage for the file during parsing.
- setLinkCount(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setLocalDirectory(Directory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Sets the local directory.
- setLocalDirectory(LocalDirectory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Sets the local directory.
- setLoggingLevel(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the logging level for logging of messages.
- setLogicalID(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Setter method to set the logical id of the job.
- setLogicalName(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical mName of the transformation.
- setLogicalNamespace(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical mNamespace of the transformation.
- setLogicalTransformation(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical transformation with a fully qualified tranformation String of the format NS::NAME:Ver
- setLogicalTransformation(String, String, String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical transformation by providing the mNamespace, mName and mVersion as seperate strings.
- setLogicalVersion(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the logical mVersion of the transformation.
- setMachine(Machine) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setMachine(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setMachineSpecific(MachineSpecific) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Sets the machine-specific grouping element.
- setMajorFaults(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of major page faults.
- setMaximumRSS(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setMegaDAGMode(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the megadag generation option
- setMetricsFileLocationInSubmitDirectory(File) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the metrics file location in the submit directory
- setMetricsType(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the metrics
- setMetricsTypeToError() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Convenience setter method
- setMinorFaults(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of minor faults.
- setMode(int) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setModificationTime(Date) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setMountPoint(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Returns the mount point.
- setMountPoint(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Sets the mount point for the file system type.
- setName(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Setter method to set the name of the job.
- setName(String) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
It sets the partition name to the value passed.
- setName(String) - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Sets the name.
- setNextException(CatalogException) - Method in exception edu.isi.pegasus.planner.catalog.CatalogException
-
Adds an
CatalogException
object to the end of the chain.
- setNodeLabel(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setNodeName(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setNonThirdPartySite(String) - Method in class edu.isi.pegasus.planner.classes.TransferJob
-
Sets the non third party site for the transfer job.
- setNumberOfRescueTries(int) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the number of times to try for rescue dag submission.
- setNumberOfRescueTries(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the number of times to try for rescue dag submission.
- setOptional(boolean) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the optional flag on the file.
- setOptionalArg(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the flag to denote that the optional argument for the random was specified.
- setOriginalArgString(String[]) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the argument string of how planner was invoked.
- setOs(Os) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Sets the Os of the sytem.
- setOS(SysInfo.OS) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the OS of the site.
- setOS(SysInfo.OS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the OS of the nodes that this grid gateway talks to.
- setOS(SysInfo.OS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the OS of the site.
- setOS(SysInfo.OS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the OS of the site.
- setOS(Executable.OS) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the OS the executable is compiled for
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the OS release of the site.
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the OS release of the site.
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the OS release of the site.
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the OS release of the site.
- setOSRelease(String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the osrelease the executable is compiled for
- setOsversion(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Sets the Os version of the system.
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Sets the OS version of the site.
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the OS version of the site.
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the OS version of the site.
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the OS version of the site.
- setOSVersion(String) - Method in class edu.isi.pegasus.planner.dax.Executable
-
Set the osversion the executable is compiled for
- setOutputBlocks(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setOutputDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Set the output directory.
- setOutputFiles(Set<PegasusFile>) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the output files associated with the job.
- setOutputSite(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the output site specified by the user.
- setOutputSize(long) - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Accessor.
- setOutputWriter(OutputStream) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the writer associated with the class to the one specified for all type of messages other than error messages.
- setOutputWriter(String) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets the writer associated with the class to the one specified for all type of messages other than error messages.
- setPageSize(long) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Sets the page size.
- setParent(String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Sets the parent of the edge.
- setParent(String) - Method in class edu.isi.pegasus.planner.dax.Edge
- setParents(Collection<GraphNode>) - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
It adds the parents to the node.
- setParserFeature(String, boolean) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Sets a parser feature, and fails here enabling us to set all the following features.
- setPartitioningType(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the partitioning type in case of partition and plan.
- setPartitionName(String) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It sets the name of the partition in the dax that is generated.
- setPartOfDeferredRun(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the flag to denote that the run is part of a larger deferred run.
- setPDAX(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the PDAX that has to be worked on by the planner.
- setPFN(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Accessor: Sets a new PFN to remember.
- setPhysicalMemory(long) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setPhysicalTransformation(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the physical location of the transformation.
- setPID(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setPID(int) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setPosition(int) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Accessor.
- setPostSCRIPTDebugON() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to turn debug on or not for exitcode.
- setPrescript(Job, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Sets the prescript that ends up calling to the default wrapper that introduces retry into Pegasus for a particular job.
- setPrescript(Job, String, String, String, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Sets the prescript that ends up calling to the default wrapper that introduces retry into Pegasus for a particular job.
- setPreScript(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
It sets the prescript for the job.
- setPreScript(String, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
It sets the prescript for the job.
- setPriority(int) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Sets the priority for the File Transfer
- setProfile(String, String, String) - Method in class edu.isi.pegasus.planner.classes.Profile
-
This method allows to set the namespace , key and value of the Profile.
- setProfileKey(String) - Method in class edu.isi.pegasus.planner.classes.Profile
-
Sets the profile key
- setProfileNamespace(String) - Method in class edu.isi.pegasus.planner.classes.Profile
-
Sets the NameSpace of the Profile
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Sets the profiles associated with the file server.
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Sets the profiles associated with the file server.
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the profiles associated with the file server.
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the profiles associated with the file server.
- setProfiles(Profiles) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Sets the profiles associated with the file server.
- setProfileValue(String) - Method in class edu.isi.pegasus.planner.classes.Profile
-
Sets the profile value
- setProgramName(String) - Method in interface edu.isi.pegasus.common.logging.Event
-
Sets the program name for the software whose log statement are logged.
- setProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.AbstractLogFormatter
-
Sets the program name for the software whose log statement are logged.
- setProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.NetloggerEvent
-
Sets the program name for the software whose log statement are logged.
- setProgramName(String) - Method in class edu.isi.pegasus.common.logging.format.SimpleEvent
-
Sets the program name for the software whose log statement are logged.
- setProgramName(String) - Method in interface edu.isi.pegasus.common.logging.LogFormatter
-
Sets the program name for the software whose log statement are logged.
- setProperties(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the properties file for the run.
- setProperty(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets a property passed on the command line.
- setProperty(String, String) - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: Overwrite any properties from within the program.
- setProperty(String, String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Accessor: Overwrite any properties from within the program.
- setProtocol(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Set the protocol implemented by the file server.
- setRandomDir(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the random directory in which the jobs are run.
- setRank(long) - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Sets the rank.
- setReceived(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setRefiner(Refiner) - Method in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
Sets the callback to the refiner, that has loaded this implementation.
- setRefiner(Refiner) - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Sets the callback to the refiner, that has loaded this implementation.
- setRegister(boolean) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the register flag of the file.
- setRegisterFlag(boolean) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient registration flag to value specified.
- setRegName(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Sets the name of the registration job.
- setRegName(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Sets the name of the registration job.
- setRelativeDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the relative directory where the submit files are to be generated.
- setRelativeSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the path to the submit directory relative to the base.
- setRelativeSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the directory where the submit files are to be generated.
- setRelease(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setReleaseVersion() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Grabs the release version from VDS.Properties file.
- setReleaseVersion() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Grabs the release version from VDS.Properties file.
- setRemoteExecutable(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the path to the executable on the remote grid site.
- setRenderedToExecutableForm(boolean) - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a boolean indicating whether a job has been rendered to an executable form or not
- setReplicaStore(ReplicaStore) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the Replica Store
- setRequestID(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the request id.
- setResource(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setResourceHandle(String) - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Sets a new resource handle to remember as PFN attribute.
- setResourceId(String) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the mResourceID where the transformation is available.
- setResponseMessage(String) - Method in class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- setRootWorkflowUUID(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the root UUID for the workflow
- setRootWorkflowUUID(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the root UUID for the workflow
- setRuntime(double) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the expected runtime for the job.
- setRuntime(long) - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Sets the runtime.
- setRuntime(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the expected runtime for the job.
- setSanitizePath(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the flag denoting whether to sanitize path or not.
- setScheduler(GridGateway.SCHEDULER_TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the the underlying scheduler that gateway talks to.
- setScheduler(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the the underlying scheduler that gateway talks to.
- setSchemaLocations(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Sets the list of external real locations where the XML schema may be found.
- setSchemaLocations(String) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Sets the list of external real locations where the XML schema may be found.
- setScratch(HeadNodeScratch) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Sets the scratch area on the head node.
- setScratch(WorkerNodeScratch) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Sets the scratch area on the head node.
- setSent(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setSharedDirectory(Directory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Sets the shared directory.
- setSharedDirectory(SharedDirectory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
Sets the shared directory.
- setSharedRSS(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setShiwaBundle(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the Shiwa Bundle to be used.
- setSignalNumber(short) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor.
- setSignalNumber(short) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Accessor.
- setSignals(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of signalss sent.
- setSite(String) - Method in class edu.isi.pegasus.planner.dax.PFN
- setSiteHandle(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the site handle for the site
- setSiteHandle(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the site handle for the site
- setSiteHandle(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the site handle of the site, where teh job is to be executed
- setSiteMap(String, Map) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
This method allows to associate a site map with a particular logical transformation
- setSiteTCEntries(String, String, TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
This method allows to add a TransformationCatalogEntry object in the map to a particular transformation for a particular site
- setSize(double) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the size for the file.
- setSize(long) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setSize(String) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the size for the file.
- setSize(String) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the size of the file.
- setStackRSS(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setStagingSiteHandle(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the staging site.
- setStamp(Stamp) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Sets the time stamp when the machine info was obtained.
- setStart(Date) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setStart(Date) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setStartTime(double) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Set the start time for the planning operation.
- setStartTime(Date) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Set the start time for the planning operation.
- setStatCall(int, StatCall) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Overwrites a stat at a certain position.
- setStatCall(Collection) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor: Overwrites internal list with an external list representing stats.
- setStatInfo(StatInfo) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Accessor.
- setStatus(int) - Method in class edu.isi.pegasus.planner.invocation.Status
-
Accessor.
- setStatus(Status) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setStderr(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStderr(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdErr(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the file to which the stderr of the job needs to be written to at the remote grid site.
- setStdin(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdin(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdIn(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the file to from which to pick up the stdin for the job.
- setStdout(File) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(File, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(File, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(File, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(File, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(String, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(String, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(String, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdout(String, File.TRANSFER, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- setStdOut(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the file to which the stdout of the job needs to be written to at the remote grid site.
- setStorage(HeadNodeStorage) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Sets the storage area on the head node.
- setStorage(WorkerNodeStorage) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Sets the storage area on the head node.
- setSubmissionCredential(CredentialHandler.TYPE) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the credential to use for job submission.
- setSubmitDirectory(File) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the directory where the submit files are to be generated.
- setSubmitDirectory(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the directory where the submit files are to be generated.
- setSubmitDirectory(String, String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the path to the directory where the submit files are to be generated.
- setSubmitToScheduler(boolean) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns whether to submit the workflow or not.
- setSupportedOperation(FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
The operation supported by the file server
- setSwaps(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of swap ops.
- setSysInfo(SysInfo) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the System Information associated with the Site.
- setSysInfo(SysInfo) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the System Information associated with the Site.
- setSysInfo(SysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Sets the system information for the entry.
- setSystemName(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setSystemTime(double) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the system time.
- setTag(String) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setTag(String) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Accessor.
- setTerminate(boolean) - Static method in class edu.isi.pegasus.planner.invocation.SimpleServer
- setTimeStampMillis(long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Set the timestamp from milliseconds returned by System.currentTimeMillis().
- setTimeStampNanos(long) - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Set the timestamp from nanoseconds returned by System.nanoTime().
- setTo(Node) - Method in class edu.isi.pegasus.planner.provisioner.Edge
-
set the 'to' task
- setToString(Set, String) - Method in class edu.isi.pegasus.planner.classes.Data
-
A small helper method that displays the contents of a Set in a String.
- setToString(Set, String) - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
A small helper method that displays the contents of a Set in a String.
- setTotalNodes(int) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the total number of nodes that this grid gateway talks to.
- setTotalNodes(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the number of total nodes that this grid gateway talks to.
- setTotalSize(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileSystemType
-
Sets the directory size
- setTransfer(File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.File
-
Set the transfer type of the file
- setTransferFlag(int) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient transfer flag to value passed.
- setTransferFlag(String) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient transfer flag corresponding to the string value of transfer mode passed.
- setTransferFlag(String, boolean) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient transfer flag corresponding to the string value of transfer mode passed.
- setTransferType(int) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Sets the transfer type for the transfers associated.
- setTransferType(int) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Sets the transfer type for the transfers associated.
- setTransformation(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setTransformation(String, String, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the various attributes of underlying transformation.
- setTransformationStore(TransformationStore) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the Transformation Store
- setTransientRegFlag() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Deprecated.
- setTruncated(boolean) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Accessor.
- setTXName(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the transformation name of the underlying transformation.
- setTXName(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
Sets the name of the transfer job.
- setTXName(String) - Method in class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
Sets the name of the transfer job.
- setTXNamespace(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the transformation namespace to be associated with the job.
- setTXVersion(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the version of the underlying transformation.
- setType(int) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the type flag to value passed.
- setType(Directory.TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Directory
-
Set the type of directory
- setType(GridGateway.TYPE) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Sets the type of grid gateway.
- setType(TCType) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the type of the transformation.
- setType(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Directory
-
Set the type of directory
- setType(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Sets the type of replica catalog.
- setType(String) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Sets the transient transfer flag to value passed.
- setTypeRecursive() - Method in class edu.isi.pegasus.planner.classes.Job
-
Sets the job to be recursive.
- setUID(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setUID(int) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setUMask(int) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setUname(Uname) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Sets the utsname generic system information record.
- setUniverse(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Set the universe associated with the job.
- setUnsharedRSS(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor.
- setupForCondorIO(PegasusProperties) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Returns a boolean indicating if properties are setup for condor io
- setupJob(Job, List, List) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Small helper method to set up the attributes for the job elements.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.PegasusGetSites
-
Sets up the logging options for this class.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.SCClient
-
Sets up the logging options for this class.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.TCClient
-
Sets up the logging options for this class.
- setupLogging() - Method in class edu.isi.pegasus.planner.client.TCConverter
-
Sets up the logging options for this class.
- setupLogging(LogManager, PegasusProperties) - Method in class edu.isi.pegasus.planner.client.Executable
-
Sets up the logging options for this class.
- setURL(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Sets the url for the replica catalog.
- setURL(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Sets the url of the LRC associated with the object.
- setURLForRegistrationOnDestination(String) - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Sets the registration url for the destination.
- setURLPrefix(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServerType
-
Sets the url prefix .
- setUsage(Usage) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setUsage(Usage) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Accessor.
- setUser(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the user.
- setUser(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setUser(String) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Accessor.
- setUserTime(double) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the user time.
- setValue(int) - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
The set method to set the value.
- setValue(int, String) - Method in class edu.isi.pegasus.planner.invocation.ArgVector
-
Sets the argument vector at the specified location.
- setValue(String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Returns the key value.
- setValue(String) - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Sets the value associated with this tuple.
- setValue(String) - Method in class edu.isi.pegasus.planner.dax.MetaData
-
Set the value of the metadata
- setValue(String) - Method in class edu.isi.pegasus.planner.dax.Profile
-
Set the value of this Profile
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Boot
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.CPU
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.File
-
Accessor.
- setValue(String) - Method in interface edu.isi.pegasus.planner.invocation.HasText
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Stamp
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.Uname
-
Accessor.
- setValue(String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Accessor.
- setVDSProperties(List) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Sets the VDS properties specifed by the user at the command line.
- setVDSSuperNode(String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Setter method to the name of the compute job of Pegasus supernode containing this job.
- setVDSSysInfo(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Sets the sysinfo for the site.
- setVDSSysInfo(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the sysinfo for the site.
- setVDSSysInfo(VDSSysInfo) - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Set the System Information associated with the transformation.
- setVersion(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setVOGroup(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the vo group
- setVOGroup(String) - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Set the VO Group to which the user belongs
- setVoluntarySwitches(int) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Accessor: Sets the number of voluntary context switches.
- setWeight(long) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
set execution time of this task
- setWhat(String) - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Set what executable to invoke and how
- setWhen(Invoke.WHEN) - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Set when to invoke
- setWorkerNodeFS(WorkerNodeFS) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Sets the worker node filesystem.
- setWorkerSharedDirectory(WorkerSharedDirectory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
Sets the directory shared amongst the worker nodes only.
- setWorkerSharedDirectory(WorkerSharedDirectory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
Sets the directory shared amongst the worker nodes only.
- setWorkflowLabel(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setWorkflowMetrics(WorkflowMetrics) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the workflow metrics.
- setWorkflowRefinementStarted(boolean) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets whether the workflow refinement has started or not
- setWorkflowTimestamp(Date) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setWorkflowUUID(String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Sets the UUID for the workflow
- setWorkflowUUID(String) - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Sets the UUID for the workflow
- setWorkingDirectory(WorkingDir) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setWorkingDirectory(String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Accessor.
- setWriters(String) - Method in class edu.isi.pegasus.common.logging.logger.Default
-
Sets both the output writer and the error writer to the same underlying writer.
- setWriters(String) - Method in class edu.isi.pegasus.common.logging.logger.Log4j
-
Sets both the output writer and the error writer to the same underlying writer.
- setWriters(String) - Method in class edu.isi.pegasus.common.logging.LogManager
-
Sets both the output writer and the error writer to the same underlying writer.
- setXBitOnFile(String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Sets the xbit on the file.
- setXBitOnFile(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Sets the xbit on the file.
- setXBitWithKickstart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether kickstart should set x bit on staged executables before launching them.
- sge - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- SGE - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
- SHARED_FS_CONFIGURATION_VALUE - Static variable in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
The value for the non shared filesystem configuration.
- shared_scratch - edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
- shared_storage - edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
- SharedDirectory - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class represents a shared directory on a site.
- SharedDirectory() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
-
The default constructor.
- SharedDirectory(Map<FileServerType.OPERATION, List<FileServer>>, InternalMountPoint) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
-
The overloaded constructor
- Shell - Class in edu.isi.pegasus.planner.code.generator
-
This code generator generates a shell script in the submit directory.
- Shell() - Constructor for class edu.isi.pegasus.planner.code.generator.Shell
-
The default constructor.
- shiftRight(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Returns a float with the decimal point shifted right till the end.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The SHORTNAME for this implementation.
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Fixed
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Flat
-
The short name for the mapper
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
The short name for the mapper
- SHORT_NAME - Static variable in class edu.isi.pegasus.planner.transfer.mapper.impl.Replica
-
The short name for this backend.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Returns a short textual description in the form of the name of the class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
-
Returns a short textual description in the form of the name of the class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.NoPOSTScript
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCode
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Returns a short textual description in the form of the name of the class.
- shortDescribe() - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
Returns a short textual description of the implementing class.
- shortDescribe() - Method in interface edu.isi.pegasus.planner.code.POSTScript
-
Returns a short textual description of the implementing class.
- SHOULD_TRANSFER_FILES_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The name of the key that designates that files should be transferred via Condor File Transfer mechanism.
- SHOULD_TRANSFER_FILES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that designates that files should be transferred via Condor File Transfer mechanism.
- show(String) - Static method in class edu.isi.pegasus.common.util.Separator2Test
- show(String) - Static method in class edu.isi.pegasus.common.util.SeparatorTest
- show(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Preliminary implementation of output method.
- showHelp() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Prints internal command help.
- ShowProperties - Class in <Unnamed>
-
Displays single specific values or all values from the current system properties.
- ShowProperties() - Constructor for class ShowProperties
- showThreads() - Method in class edu.isi.pegasus.planner.client.ExitCode
- showUsage() - Method in class edu.isi.pegasus.planner.client.ExitCode
-
Implements printing the usage string onto stdout.
- showUsage() - Method in class edu.isi.pegasus.planner.client.RCClient
-
Prints the usage string on stdout.
- showUsage() - Method in class edu.isi.pegasus.planner.client.VersionNumber
-
Prints the usage string.
- showUsage() - Method in class edu.isi.pegasus.planner.invocation.SimpleServer
- showVersion(Version, boolean) - Static method in class edu.isi.pegasus.planner.client.VersionNumber
-
Print the version information onto stdout.
- shutdown() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
Sets the shutdown flag to true.
- shutdown() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool
-
This method is called to ensure the clean shutdown of threads, and waits till all the requests have been serviced.
- Simple - Class in edu.isi.pegasus.common.logging.format
-
This formatter formats the messages in the simple format.
- Simple() - Constructor for class edu.isi.pegasus.common.logging.format.Simple
-
The default constructor.
- SimpleEvent - Class in edu.isi.pegasus.common.logging.format
-
A Simple LogEvent implementation that is back by a StringBuffer.
- SimpleEvent() - Constructor for class edu.isi.pegasus.common.logging.format.SimpleEvent
-
The default constructor.
- SimpleFile - Class in edu.isi.pegasus.planner.catalog.replica.impl
-
This class implements a replica catalog on top of a simple file which contains two or more columns.
- SimpleFile() - Constructor for class edu.isi.pegasus.planner.catalog.replica.impl.SimpleFile
-
Default empty constructor creates an object that is not yet connected to any database.
- SimpleServer - Class in edu.isi.pegasus.planner.invocation
- SimpleServer(int) - Constructor for class edu.isi.pegasus.planner.invocation.SimpleServer
- SimpleServerThread - Class in edu.isi.pegasus.planner.invocation
- SimpleServerThread(SimpleServer, Socket) - Constructor for class edu.isi.pegasus.planner.invocation.SimpleServerThread
- SINGLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants for single read.
- SINGLE_READ - Static variable in class edu.isi.pegasus.planner.catalog.transformation.TCMode
-
Constants for backward compatibility.
- SingleFTPerXFERJob - Interface in edu.isi.pegasus.planner.transfer
-
An empty interface, that allows for grouping of implementations that can handle only one file transfer per transfer job like old guc and Stork.
- SingleFTPerXFERJobRefiner - Class in edu.isi.pegasus.planner.transfer
-
The refiner interface, that determines the functions that need to be implemented to add various types of transfer nodes to the workflow.
- SingleFTPerXFERJobRefiner(ADag, PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.SingleFTPerXFERJobRefiner
-
The overloaded constructor.
- SingleLook - Class in edu.isi.pegasus.planner.partitioner
-
This class ends up writing a partitioned dax, that corresponds to one partition as defined by the Partitioner.
- SingleLook(String, String) - Constructor for class edu.isi.pegasus.planner.partitioner.SingleLook
-
The overloaded constructor.
- SingleLook.MyCallBackHandler - Class in edu.isi.pegasus.planner.partitioner
-
The internal callback handler for the DAXParser in Euryale.
- SINGLETON_LOAD - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants to specify how to load the class, as singleton or non singleton.
- SINGLETON_LOAD - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
Constants to specify how to load the class, as singleton or non singleton.
- singletonInstance(String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The method which returns a Singleton instance of the derived InfoProvider class.
- singletonInstance(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The method returns a singleton instance of the derived InfoProvider class.
- singletonInstance(String, String) - Static method in class edu.isi.pegasus.planner.catalog.site.impl.old.XML
-
The method returns a singleton instance of the derived InfoProvider class.
- Site - Class in edu.isi.pegasus.planner.selector.site.heft
-
A data class that models a site as a collection of processors.
- Site(String) - Constructor for class edu.isi.pegasus.planner.selector.site.heft.Site
-
The default constructor.
- Site(String, int) - Constructor for class edu.isi.pegasus.planner.selector.site.heft.Site
-
The overloaded constructor.
- SITE - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "site".
- SITE - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "site".
- SITE_CATALOG - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the handle to the site catalog.
- SITE_NOT_FOUND - Static variable in interface edu.isi.pegasus.planner.selector.SiteSelector
-
The value for the pool handle, when the pool is not found.
- SITE_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
The name of the key that specifies the site attribute to be associated
- SITE_STORE - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the handle to the Site Store
- SiteCatalog - Interface in edu.isi.pegasus.planner.catalog
- SiteCatalogEntry - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes a site in the site catalog.
- SiteCatalogEntry() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The default constructor.
- SiteCatalogEntry(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The overloaded constructor.
- SiteCatalogEntry3 - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes a site in the site catalog.
- SiteCatalogEntry3() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The default constructor.
- SiteCatalogEntry3(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The overloaded constructor.
- SiteCatalogException - Exception in edu.isi.pegasus.planner.catalog.site
-
Class to notify of failures.
- SiteCatalogException() - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
-
Constructs a
SiteCatalogException
with no detail message. - SiteCatalogException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
-
Constructs a
SiteCatalogException
with the specified detailed message. - SiteCatalogException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
-
Constructs a
SiteCatalogException
with the specified detailed message and a cause. - SiteCatalogException(Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteCatalogException
-
Constructs a
SiteCatalogException
with the specified just a cause. - SiteCatalogReservedWord - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to capture reserved words.
- SiteCatalogReservedWord(int) - Constructor for class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
Initializes an instance of a reserved word token.
- SiteCatalogTextParser - Class in edu.isi.pegasus.planner.parser
-
Parses the input stream and generates site configuration map as output.
- SiteCatalogTextParser(Reader) - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogTextParser
-
Initializes the parser with an input stream to read from.
- SiteCatalogTextScanner - Class in edu.isi.pegasus.planner.parser
-
Implements the scanner for reserved words and other tokens that are generated from the input stream.
- SiteCatalogTextScanner(Reader) - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Starts to scan the given stream.
- SiteCatalogXMLMetadataParser - Class in edu.isi.pegasus.planner.parser
-
A lightweight XML Parser class to just retrieve the meta data in first instance of an element in a XML Document.
- SiteCatalogXMLMetadataParser(PegasusBag, String) - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
The overloaded constructor
- SiteCatalogXMLMetadataParser.StopParserException - Exception in edu.isi.pegasus.planner.parser
-
Private RuntimeException to stop the SAX Parser
- SiteCatalogXMLParser - Interface in edu.isi.pegasus.planner.parser
-
An empty interface for Site Catalog XML parsers
- SiteCatalogXMLParser3 - Class in edu.isi.pegasus.planner.parser
-
This class uses the Xerces SAX2 parser to validate and parse an XML document conforming to the Site Catalog schema v3.0
- SiteCatalogXMLParser3(PegasusBag, List<String>) - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
The overloaded constructor.
- SiteCatalogXMLParser4 - Class in edu.isi.pegasus.planner.parser
-
This class uses the Xerces SAX2 parser to validate and parse an XML document conforming to the Site Catalog schema v4.0
- SiteCatalogXMLParser4(PegasusBag, List<String>) - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
The overloaded constructor.
- SiteCatalogXMLParserFactory - Class in edu.isi.pegasus.planner.parser
-
A factory class to load the appropriate Site Catalog Parser implementations based on version in the site catalog element of the XML document
- SiteCatalogXMLParserFactory() - Constructor for class edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactory
- SiteCatalogXMLParserFactoryException - Exception in edu.isi.pegasus.planner.parser
-
Class to notify of failures while instantiating DAXCallback implementations.
- SiteCatalogXMLParserFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactoryException
-
Constructs a
DAXParserFactoryException
with no detail message. - SiteCatalogXMLParserFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactoryException
-
Constructs a
DAXParserFactoryException
with the specified detailed message. - SiteCatalogXMLParserFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactoryException
-
Constructs a
DAXParserFactoryException
with the specified detailed message and a cause. - SiteCatalogXMLParserFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.parser.SiteCatalogXMLParserFactoryException
-
Constructs a
DAXParserFactoryException
with the specified detailed message and a cause. - SiteData - Class in edu.isi.pegasus.planner.catalog.site.classes
-
The abstract base class for all site catalog classes.
- SiteData() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteData
- SiteDataVisitor - Interface in edu.isi.pegasus.planner.catalog.site.classes
-
The Visitor interface for the Site Catalog Data Classes.
- SiteFactory - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
A factory class to load the appropriate implementation of Transformation Catalog as specified by properties.
- SiteFactory - Class in edu.isi.pegasus.planner.catalog.site
-
A factory class to load the appropriate implementation of Site Catalog as specified by properties.
- SiteFactory() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
- SiteFactory() - Constructor for class edu.isi.pegasus.planner.catalog.site.SiteFactory
- SiteFactoryException - Exception in edu.isi.pegasus.planner.catalog.site.impl.old
-
Class to notify of failures while instantiating Site Catalog implementations.
- SiteFactoryException - Exception in edu.isi.pegasus.planner.catalog.site
-
Class to notify of failures while instantiating Site Catalog implementations.
- SiteFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
Constructs a
SiteFactoryException
with no detail message. - SiteFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
Constructs a
SiteFactoryException
with no detail message. - SiteFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
Constructs a
SiteFactoryException
with the specified detailed message. - SiteFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
Constructs a
SiteFactoryException
with the specified detailed message. - SiteFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
Constructs a
SiteFactoryException
with the specified detailed message and a cause. - SiteFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
Constructs a
SiteFactoryException
with the specified detailed message and a cause. - SiteFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactoryException
-
Constructs a
SiteFactoryException
with the specified detailed message and a cause. - SiteFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.site.SiteFactoryException
-
Constructs a
SiteFactoryException
with the specified detailed message and a cause. - SiteInfo - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that is used to store information about a single remote site (pool).
- SiteInfo() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Default Constructor.
- SITEINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Array storing the names of the attributes that are stored with the site.
- SiteInfo2SiteCatalogEntry - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An adapter class that converts SiteInfo object to SiteCatalogEntry object.
- SiteInfo2SiteCatalogEntry() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteInfo2SiteCatalogEntry
- siteSelectionFor(String, String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
siteSelectionFor
- siteSelectionFor(String, String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- SiteSelector - Interface in edu.isi.pegasus.planner.selector
-
The interface for the Site Selector.
- SiteSelectorFactory - Class in edu.isi.pegasus.planner.selector.site
-
A factory class to load the appropriate type of Site Selector, as specified by the user at runtime in properties.
- SiteSelectorFactory() - Constructor for class edu.isi.pegasus.planner.selector.site.SiteSelectorFactory
- SiteSelectorFactoryException - Exception in edu.isi.pegasus.planner.selector.site
-
Class to notify of failures while instantiating SiteSelector implementations.
- SiteSelectorFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
Constructs a
SiteSelectorFactoryException
with no detail message. - SiteSelectorFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
Constructs a
SiteSelectorFactoryException
with the specified detailed message. - SiteSelectorFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
Constructs a
SiteSelectorFactoryException
with the specified detailed message and a cause. - SiteSelectorFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.selector.site.SiteSelectorFactoryException
-
Constructs a
SiteSelectorFactoryException
with the specified detailed message and a cause. - SiteStore - Class in edu.isi.pegasus.planner.catalog.site.classes
-
The site store contains the collection of sites backed by a HashMap.
- SiteStore() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
The default constructor.
- SiteTransfer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
The default constructor.
- SiteTransfer(String, int) - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
Convenience constructor.
- size() - Method in class edu.isi.pegasus.common.util.CommonProperties
-
Accessor: Obtains the number of properties known to the project.
- size() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the number of nodes in the graph.
- size() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns the number of nodes in the graph.
- size() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns the number of nodes in the graph.
- size() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns the number of nodes in the graph.
- size() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the number of nodes in the partition.
- skippedEntity(String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
Receive a notification that an entity was skipped.
- skipWhitespace() - Method in class edu.isi.pegasus.planner.parser.SiteCatalogTextScanner
-
Skips any white space and comments in the input.
- skipWhitespace() - Method in class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Skips any white space and comments in the input.
- SLS - Interface in edu.isi.pegasus.planner.transfer
-
This interface defines the second level staging process, that manages the transfer of files from the headnode to the worker node temp and back.
- SLSFactory - Class in edu.isi.pegasus.planner.transfer.sls
-
A factory class to load the appropriate type of SLS Implementation to do the Second Level Staging.
- SLSFactory() - Constructor for class edu.isi.pegasus.planner.transfer.sls.SLSFactory
- SLSFactoryException - Exception in edu.isi.pegasus.planner.transfer.sls
-
Class to notify of failures while instantiating SLS implementations.
- SLSFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
Constructs a
SLSFactoryException
with no detail message. - SLSFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
Constructs a
SLSFactoryException
with the specified detailed message. - SLSFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
Constructs a
SLSFactoryException
with the specified detailed message and a cause. - SLSFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.sls.SLSFactoryException
-
Constructs a
SLSFactoryException
with the specified detailed message and a cause. - slurpInFile(String, String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Convenience method to slurp in contents of a file into memory.
- SOLUTION_PREFIX - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The prefix that the site selector writes out on its stdout to designate that it is sending a solution.
- sort() - Method in class edu.isi.pegasus.planner.partitioner.Topological
-
Topologically sorts the partition and returns a List of
GraphNode
elements. - sparcv7 - edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- sparcv7 - edu.isi.pegasus.planner.dax.Executable.ARCH
- SPARCV7 - edu.isi.pegasus.planner.dax.Executable.ARCH
- SPARCV7 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- sparcv9 - edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- sparcv9 - edu.isi.pegasus.planner.dax.Executable.ARCH
- SPARCV9 - edu.isi.pegasus.planner.dax.Executable.ARCH
- SPARCV9 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- SPECIALIZED_TEMPLATES_Q - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- split(String) - Static method in class edu.isi.pegasus.common.util.Separator
-
Splits a fully-qualified identifier into its components.
- splitFQDI(String) - Static method in class edu.isi.pegasus.common.util.Separator
-
Splits a fully-qualified definition identifier into separate namespace, name and version.
- splitLFN(String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Splits the full qualified logical transformation into its components.
- splitVersion() - Method in class edu.isi.pegasus.common.util.Version
- SRM_MOUNT_POINT_PROPERTIES_SUFFIX - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The suffix to retrive the mount point for SRM server.
- SRM_PROPERTIES_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The property prefix for retrieving SRM properties.
- SRM_SERVICE_URL_PROPERTIES_SUFFIX - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The suffix to retrive the service url for SRM server.
- ssh - edu.isi.pegasus.common.credential.CredentialHandler.TYPE
- Ssh - Class in edu.isi.pegasus.common.credential.impl
-
A convenience class that allows us to determine the path to the user ssh private key file.
- Ssh() - Constructor for class edu.isi.pegasus.common.credential.impl.Ssh
-
The default constructor.
- SSH - Class in edu.isi.pegasus.planner.code.generator.condor.style
-
Enables a job to be directly submitted to a remote PBS cluster using direct ssh submission available as part of BOSCO The CREAM CE support in Condor is documented at the following link
- SSH() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.style.SSH
-
The default constructor.
- SSH_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
- SSH_PRIVATE_KEY_PEGASUS_PROFILE_KEY - Static variable in class edu.isi.pegasus.common.credential.impl.Ssh
- SSH_PRIVATE_KEY_VARIABLE - Static variable in class edu.isi.pegasus.common.credential.impl.Ssh
-
The name of the environment variable that specifies the path to the SSH key.
- SSH_PRIVATE_KEY_VARIABLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
- SSH_STYLE - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The style indicating that the submit files are to be generated for a direct ssh submission
- SSH_STYLE_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.code.generator.condor.CondorStyleFactory
-
The name of the class implementing the CondorG Style.
- st - Variable in class edu.isi.pegasus.planner.provisioner.Node
- stack(boolean) - Method in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
-
Run Task placement phase of BTS algorithm
- StackBasedXMLParser - Class in edu.isi.pegasus.planner.parser
-
An abstract base class that XML Parsers can use if they use stack internally to store the elements encountered while parsing XML documents using SAX
- StackBasedXMLParser(PegasusBag) - Constructor for class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
The overloaded constructor.
- stacked - Variable in class edu.isi.pegasus.planner.provisioner.Node
- STAGE_IN_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotea a job that is used to stage in the input files for a compute job.
- STAGE_IN_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
-
The prefix for the jobs which are added to transfer the files to a job's execution pool from the location returned from the replica mechanism.
- STAGE_IN_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
The constant to denote that a stage-in transfer is to be exectuted remotely
- STAGE_IN_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which stage-in transfers need to be TPT.
- STAGE_IN_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that a stage-in transfer is to be executed on the remote site.
- STAGE_IN_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which stage-in TPT transfers need to be executed on the remote site.
- STAGE_IN_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that a stage-in transfer is to be third party.
- STAGE_IN_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The property name to get the sites for which stage-in transfers need to be executed remotely.
- STAGE_IN_WORKER_PACKAGE_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that stages the worker package.
- STAGE_OUT_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that transfers the date generated by a compute job to the output pool specified by the user.
- STAGE_OUT_PREFIX - Static variable in interface edu.isi.pegasus.planner.transfer.Refiner
-
The prefix for the jobs which are added to transfer the files generated by a job on an execution pool to the output pool.
- STAGE_OUT_REMOTE_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
The constant to denote that a stage-out transfer is to be exectuted remotely
- STAGE_OUT_TPT_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which stage-out transfers need to be TPT.
- STAGE_OUT_TPT_REMOTE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that a stage-out transfer is to be executed on the remote site.
- STAGE_OUT_TPT_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.TPT
-
The property name to get the sites for which stage-out TPT transfers need to be executed on the remote site.
- STAGE_OUT_TPT_TYPE - Static variable in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The constant to denote that a stage-out transfer is to be third party.
- STAGE_OUT_TRANSFERS_REMOTE_PROPERTY - Static variable in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
The property name to get the sites for which stage-out transfers need to be executed remotely.
- STAGEABLE - edu.isi.pegasus.planner.catalog.transformation.classes.TCType
- Staged - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
-
This implementation only generates maps for sites where transformation can be staged
- Staged - Class in edu.isi.pegasus.planner.selector.transformation
-
This implementation of the Selector select a transformation of type STAGEABLE on all sites.
- Staged() - Constructor for class edu.isi.pegasus.planner.selector.transformation.Staged
- Staged(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.Staged
-
The protected constructor.
- stageInOnRemoteSite(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns a boolean indicating whether to execute stage-in transfers on remote site or not.
- stageInThirdParty(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to use third party transfers for stage-in transfers or not.
- stageInThirdPartyRemote(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to execute third party transfers for stage-in on remote site or not.
- stageOutOnRemoteSite(String) - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer
-
Returns a boolean indicating whether to execute stage-out transfers on remote site or not.
- stageOutThirdParty(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to use third party transfers for stage-out transfers or not.
- stageOutThirdPartyRemote(String) - Method in class edu.isi.pegasus.planner.transfer.TPT
-
Returns a boolean indicating whether to execute third party transfers for stage-out on remote site or not.
- stageSLSFilesViaFirstLevelStaging() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to stage sls files via Pegasus First Level Staging or let Condor do it.
- stagingIntroducedFor(List, String) - Method in class edu.isi.pegasus.planner.provenance.pasoa.pps.Empty
-
stagingIntroducedFor
- stagingIntroducedFor(List, String) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.PPS
- stagingSiteMappingToString() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Convers the staging site mappings to comma separated list of executionsite=stagingsite mappings
- Stamp - Class in edu.isi.pegasus.planner.invocation
-
The Stamp element.
- Stamp() - Constructor for class edu.isi.pegasus.planner.invocation.Stamp
-
The default constructor
- Stamp(String) - Constructor for class edu.isi.pegasus.planner.invocation.Stamp
-
Constructs a piece of data.
- STAMP_FILENAME - Static variable in class edu.isi.pegasus.common.util.Version
-
Basename of the build stamp file.
- Stampede - Class in edu.isi.pegasus.planner.code.generator
-
A Stampede Events Code Generator that generates events in netlogger format for the exectuable workflow.
- Stampede() - Constructor for class edu.isi.pegasus.planner.code.generator.Stampede
- STAMPEDE_EVENT_GENERATOR_CLASS - Static variable in class edu.isi.pegasus.planner.code.CodeGeneratorFactory
-
The name of the class implementing the Stampede Event Generator
- STANDARD_UNIVERSE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
- STANDARD_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for standard universe.
- start - edu.isi.pegasus.planner.dax.Invoke.WHEN
- start() - Method in class edu.isi.pegasus.planner.refiner.ThreadPool.AuthenticateThread
-
The start method for the thread.
- START_COMMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
- START_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
- START_END_ELEMENT_TAG - Static variable in class edu.isi.pegasus.common.util.XMLWriter
- START_POSTFIX - Static variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
- startDocument() - Method in class edu.isi.pegasus.planner.client.DAXValidator
- startDocument() - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method specifies what to do when the parser is at the beginning of the document.
- startElement(String) - Method in class edu.isi.pegasus.common.util.XMLWriter
- startElement(String, int) - Method in class edu.isi.pegasus.common.util.XMLWriter
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Overriding the empty implementation provided by DefaultHandler of ContentHandler.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
This method defines the action to take when the parser begins to parse an element.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.Parser
-
An empty implementation is provided by DefaultHandler of ContentHandler.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
An empty implementation is provided by DefaultHandler of ContentHandler.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
Start Element.
- startElement(String, String, String, Attributes) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
This method defines the action to take when the parser begins to parse an element.
- startMonitoring() - Method in interface edu.isi.pegasus.planner.code.CodeGenerator
-
Starts monitoring of the workflow by invoking a workflow monitor daemon.
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Starts monitoring of the workflow by invoking a workflow monitor daemon.
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Starts monitoring of the workflow by invoking a workflow monitor daemon tailstatd.
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.DAXReplicaStore
-
Not implemented
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
Not implemented
- startMonitoring() - Method in class edu.isi.pegasus.planner.code.generator.Stampede
- startParser(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.XML2
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.ConfigXmlParser
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
This starts the parsing of the file by the parser.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
The main method that starts the parsing.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Start the parser.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.PDAXParser
-
Ends up starting the parsing of the file , by the underlying parser.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser
-
The function that starts the parser
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser3
-
The main method that starts the parsing.
- startParser(String) - Method in class edu.isi.pegasus.planner.parser.SiteCatalogXMLParser4
-
The main method that starts the parsing.
- startPrefixMapping(String, String) - Method in class edu.isi.pegasus.planner.parser.InvocationParser
-
There is a prefix or namespace defined, put the prefix and its URI in the HashMap.
- stat - edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
- stat - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- stat(String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
Return information about path
- Stat - Class in edu.isi.pegasus.planner.namespace
-
The stat namespace object.
- Stat() - Constructor for class edu.isi.pegasus.planner.namespace.Stat
-
The default constructor.
- Stat(Map) - Constructor for class edu.isi.pegasus.planner.namespace.Stat
-
The overloaded constructor.
- STAT - edu.isi.pegasus.planner.dax.Profile.NAMESPACE
- STAT - Static variable in class edu.isi.pegasus.planner.classes.Profile
- StatCall - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for a complete call to stat() or fstat().
- StatCall() - Constructor for class edu.isi.pegasus.planner.invocation.StatCall
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- StatCall(String) - Constructor for class edu.isi.pegasus.planner.invocation.StatCall
-
Construct a specific but empty stat call object.
- statemap - Static variable in class edu.isi.pegasus.common.util.Separator
-
Maps the state and character class to the follow-up state.
- statemap2 - Static variable in class edu.isi.pegasus.common.util.Separator
-
Maps the new state from current state and character class.
- STATIC_BINARY - edu.isi.pegasus.planner.catalog.transformation.classes.TCType
- static_method(String, Object[]) - Method in class edu.isi.pegasus.common.util.DynamicLoader
-
Dynamically instantiates a class from a static method which constructs the resulting object.
- StatInfo - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for the results of a call to either stat() or fstat().
- StatInfo() - Constructor for class edu.isi.pegasus.planner.invocation.StatInfo
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- statistics() - Method in class edu.isi.pegasus.planner.client.DAXValidator
-
Show how many warnings, errors and fatals were shown.
- Status - Class in edu.isi.pegasus.planner.invocation
-
This class encapsulates the exit code or reason of termination for a given job.
- Status() - Constructor for class edu.isi.pegasus.planner.invocation.Status
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- Status(int) - Constructor for class edu.isi.pegasus.planner.invocation.Status
-
Constructs a layer with the raw exit code.
- Status(int, JobStatus) - Constructor for class edu.isi.pegasus.planner.invocation.Status
-
Constructs the complete class with raw exit code and a status child describing the exit code.
- stdErr - Variable in class edu.isi.pegasus.planner.classes.Job
-
File which contains standard error.
- stdIn - Variable in class edu.isi.pegasus.planner.classes.Job
-
File which contains stdin (keyboard input).
- stdOut - Variable in class edu.isi.pegasus.planner.classes.Job
-
File which contains stdout.
- StopParserException() - Constructor for exception edu.isi.pegasus.planner.parser.SiteCatalogXMLMetadataParser.StopParserException
- STORAGE_DIR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the storage directory of the grid ftp server.
- StorageType - Class in edu.isi.pegasus.planner.catalog.site.classes
-
An Abstract Data class to describe the filesystem layout on a site, both shared and local on a site/node
- StorageType() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
The default constructor
- StorageType(LocalDirectory, SharedDirectory) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.StorageType
-
The overloaded constructor.
- store(Map) - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Stores replica catalog entries into the store.
- StoreGvdsMdsInfo(NamingEnumeration, String, PoolConfig) - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.MdsQuery
- Stork - Class in edu.isi.pegasus.planner.code.generator
-
This implementation generates files that can be understood by Stork.
- Stork - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that creates transfer jobs referring to the stork data placement scheduler that can handle only one transfer per job.
- Stork() - Constructor for class edu.isi.pegasus.planner.code.generator.Stork
-
The default constructor.
- Stork(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The overloaded constructor, that is called by the Factory to load the class.
- strargs - Variable in class edu.isi.pegasus.planner.classes.Job
-
The arguements for the job.
- Strategy - Interface in edu.isi.pegasus.planner.refiner.createdir
-
The interface that defines how the cleanup job is invoked and created.
- STREAM_STDERR_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies whether to stream stderr or not
- STREAM_STDOUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies whether to stream stderr or not
- StreamGobbler - Class in edu.isi.pegasus.common.util
-
A Stream gobbler class to take care of reading from a stream and optionally write out to another stream.
- StreamGobbler(InputStream, StreamGobblerCallback) - Constructor for class edu.isi.pegasus.common.util.StreamGobbler
-
The overloaded constructor.
- StreamGobblerCallback - Interface in edu.isi.pegasus.common.util
-
This interface defines the callback calls that are called from within the StreamGobbler while working on a stream.
- StringBuilderDataSink() - Constructor for class edu.isi.pegasus.gridftp.GridFTPConnection.StringBuilderDataSink
- stringInList(String, List) - Method in class edu.isi.pegasus.planner.refiner.Engine
- stringInPegVector(String, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Returns true if a particular String is in the Vector of PegasusFile objects.
- stringInVector(String, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
Returns true if a particular String is in the Vector of strings.
- STYLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key, that denotes the style of the dag that is constructed.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorG
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideIN
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorGlideinWMS
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CreamCE
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.GLite
-
The name of the style being implemented.
- STYLE_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.SSH
-
The name of the style being implemented.
- SUBDAG_EXTERNAL_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Dagman
-
The name of the key that indicates the path to the external subdag
- SUBDAXGenerator - Class in edu.isi.pegasus.planner.code.generator.condor
-
The class that takes in a dax job specified in the DAX and renders it into a SUBDAG with pegasus-plan as the appropriate prescript.
- SUBDAXGenerator() - Constructor for class edu.isi.pegasus.planner.code.generator.condor.SUBDAXGenerator
-
The default constructor.
- Submit - Class in edu.isi.pegasus.planner.catalog.transformation.mapper
-
This implementation of the TCMapper returns a TCMap which only contains Stageable executables from the Local site.
- Submit - Class in edu.isi.pegasus.planner.selector.transformation
-
This implementation of the Selector select a transformation of type STAGEABLE and only on the submit site.
- Submit() - Constructor for class edu.isi.pegasus.planner.selector.transformation.Submit
- Submit(PegasusBag) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.mapper.Submit
-
The protected constructor.
- SUBMIT_DIR_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The submit directory for the workflow.
- SUBMIT_DIRECTORY_PREFIX - Static variable in class edu.isi.pegasus.planner.common.RunDirectoryFilenameFilter
-
The prefix for the submit directory.
- SUBMIT_DIRECTORY_PREFIX - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The prefix for the submit directory.
- SUBMIT_HOSTNAME_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The key for the submit hostname.
- SubmitDirectoryFilenameFilter - Class in edu.isi.pegasus.planner.client
-
A filename filter for identifying the submit directory
- SubmitDirectoryFilenameFilter(String) - Constructor for class edu.isi.pegasus.planner.client.SubmitDirectoryFilenameFilter
-
Overloaded constructor.
- submitToScheduler() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns whether to submit the workflow or not.
- submitWorkflow(String) - Method in class edu.isi.pegasus.planner.client.CPlanner
-
Submits the workflow for execution using pegasus-run, a wrapper around pegasus-submit-dag.
- SUCCESS_MESSAGE - Static variable in class edu.isi.pegasus.planner.client.CPlanner
-
The message to be logged in case of empty executable workflow.
- SUCCESS_MESSAGE_AGGREGATOR - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
Static Handle to the delimiter aggregator.
- SUFFIX_TEMPORARY_FILE - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The suffix to be used while creating a temporary file to pass to the external siteselector.
- Sum - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An implementation of the Aggregator interface that sums the profile values.
- Sum() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.Sum
- SUM_AGGREGATOR - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
Static Handle to the sum aggregator.
- sunos - edu.isi.pegasus.planner.dax.Executable.OS
- SUNOS - edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
- SUNOS - edu.isi.pegasus.planner.dax.Executable.OS
- SUNOS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- SUPPORTED_TRANSFORMATION_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The supported transformation formats.
- supportedOSReleaseAndVersions() - Static method in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
A set of OS release and version combinations for which our build processes build Pegasus binaries.
- Swap - Class in edu.isi.pegasus.planner.invocation
-
The swap element.
- Swap() - Constructor for class edu.isi.pegasus.planner.invocation.Swap
-
The default constructor
- symbolTable() - Static method in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
Singleton access to the symbol table as a whole.
- symbolTable() - Static method in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
Singleton access to the symbol table as a whole.
- SYMLINK_URL_SCHEME - Static variable in class edu.isi.pegasus.common.util.PegasusURL
-
The scheme name for file url.
- symlinkCommonLog() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Completely disable placing a symlink for Condor common log (indiscriminately).
- SysInfo - Class in edu.isi.pegasus.planner.catalog.classes
-
A container class to keep system information associated with a Site entry in the Site Catalog or a Transformation in the Transformation Catalog.
- SysInfo() - Constructor for class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
The default constructor.
- SysInfo(String) - Constructor for class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
This constructor takes the system information in the format arch::os:osversion:glibc
- SYSINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the
VDSSysInfo
site. - SYSINFO - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved work sysinfo.
- SysInfo.Architecture - Enum in edu.isi.pegasus.planner.catalog.classes
-
Enumerates the new architecture types supported in Pegasus.
- SysInfo.OS - Enum in edu.isi.pegasus.planner.catalog.classes
-
Enumerates the new OS types supported in Pegasus.
- system - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- system - Variable in class edu.isi.pegasus.planner.client.TCClient
- SYSTEM_ARCHITECTURE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SYSTEM_ARCHITECTURE - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- SYSTEM_ATTRIBUTE_KEY - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The system attribute for the uname
- SYSTEM_HOSTADDR - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SYSTEM_HOSTADDR - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- SYSTEM_HOSTNAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SYSTEM_HOSTNAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- SYSTEM_NODENAME - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SYSTEM_NODENAME - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- SYSTEM_NUMBEROFPROCESSORS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SYSTEM_NUMBEROFPROCESSORS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- SYSTEM_OS - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- SYSTEM_OS - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- systemstring - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
T
- T2 - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that creates transfer jobs referring to the T2 executable distributed with the Pegasus.
- T2(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.T2
-
The overloaded constructor, that is called by the Factory to load the class.
- TABSPACE - Static variable in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
- TAIL_INDEX - Static variable in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
The index of the tail job.
- Task - Class in edu.isi.pegasus.planner.invocation
-
The proc element.
- Task() - Constructor for class edu.isi.pegasus.planner.invocation.Task
-
The default constructor
- TASK_EDGE_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The event name for task edge
- TASK_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The event name for task info
- TASK_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for task id
- TASK_MAP_EVENT_NAME - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The event name for task map event
- TASK_TRANSFORMATION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for transformation
- taskName - Variable in class edu.isi.pegasus.planner.provisioner.Node
- tc - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- tc - Variable in class edu.isi.pegasus.planner.client.TCClient
- TC_DATA_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- TC_INITIALIZATION_FILES - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
List of sql initialization files
- TC_TEXT_FILE - Static variable in class edu.isi.pegasus.planner.common.PegasusProperties
- TCAdd - Class in edu.isi.pegasus.planner.catalog.transformation.client
- TCAdd(TransformationCatalog, LogManager, Map) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCAdd
- TCClient - Class in edu.isi.pegasus.planner.client
-
A common client to add, modify, delete, query any Transformation Catalog implementation.
- TCClient() - Constructor for class edu.isi.pegasus.planner.client.TCClient
- TCConverter - Class in edu.isi.pegasus.planner.client
-
A client to convert transformation catalog between different formats.
- TCConverter() - Constructor for class edu.isi.pegasus.planner.client.TCConverter
-
The default constructor.
- TCDelete - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
This is a TCClient class which handles the Delete Operations.
- TCDelete(TransformationCatalog, LogManager, Map) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCDelete
- TCFormatUtility - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
This is a utility class for converting transformation catalog into different formats.
- TCFormatUtility() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
- tclist - Variable in class edu.isi.pegasus.planner.selector.transformation.RoundRobin
- TCMap - Class in edu.isi.pegasus.planner.classes
-
This is a data class to store the TCMAP for a particular dag.
- TCMap() - Constructor for class edu.isi.pegasus.planner.classes.TCMap
-
Default constructor.
- TCMode - Class in edu.isi.pegasus.planner.catalog.transformation
-
This class defines all the constants referring to the various interfaces to the transformation catalog, and used by the Concrete Planner.
- TCMode() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TCMode
- TCQuery - Class in edu.isi.pegasus.planner.catalog.transformation.client
- TCQuery(TransformationCatalog, LogManager, Map) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
- TCQuery.LFNComparator - Class in edu.isi.pegasus.planner.catalog.transformation.client
-
The comparator that is used to group the RLSAttributeObject objects by the value in the key field.
- TCType - Enum in edu.isi.pegasus.planner.catalog.transformation.classes
-
This is an enumerated data class for the different types of transformation.
- TCType() - Constructor for enum edu.isi.pegasus.planner.catalog.transformation.classes.TCType
- tempFT - Variable in class edu.isi.pegasus.planner.provisioner.Node
- TEMPLATE - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- TEMPLATE_ID - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- TEMPLATE_ID - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- Temporary - Class in edu.isi.pegasus.planner.invocation
-
This class is the container for a temporary file object.
- Temporary() - Constructor for class edu.isi.pegasus.planner.invocation.Temporary
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- Temporary(String, int) - Constructor for class edu.isi.pegasus.planner.invocation.Temporary
-
Constructs a temporary file object.
- tempST - Variable in class edu.isi.pegasus.planner.provisioner.Node
- Tentacles - Class in edu.isi.pegasus.planner.refiner.createdir
-
This Strategy instance places the create directory jobs at the top of the graph.
- Tentacles() - Constructor for class edu.isi.pegasus.planner.refiner.createdir.Tentacles
- test(String) - Static method in class edu.isi.pegasus.planner.code.generator.condor.CondorQuoteParser
-
Helper test method that tries and catches exception
- test(String) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusExitCodeEncode
- TestDAXParser - Class in edu.isi.pegasus.planner.parser
-
A Test Class to demonstrate use of DAXParser and illustrates how to use the Callbacks for the parser.
- TestDAXParser() - Constructor for class edu.isi.pegasus.planner.parser.TestDAXParser
- testForFile(String) - Method in class edu.isi.pegasus.planner.parser.Parser
-
Tests whether the file exists or not.
- TestLogFormatter - Class in edu.isi.pegasus.common.logging
-
Test program to test out LogFormatter API
- TestLogFormatter() - Constructor for class edu.isi.pegasus.common.logging.TestLogFormatter
- TestNamespace - Class in edu.isi.pegasus.planner.namespace
-
Test Class for namespaces.
- TestNamespace() - Constructor for class edu.isi.pegasus.planner.namespace.TestNamespace
- TestReduceEdges - Class in edu.isi.pegasus.planner.refiner
- TestReduceEdges() - Constructor for class edu.isi.pegasus.planner.refiner.TestReduceEdges
- TestReplicaCatalog - Class in edu.isi.pegasus.planner.catalog.replica
-
A Test program that shows how to load a Replica Catalog, and query for entries sites.
- TestReplicaCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.replica.TestReplicaCatalog
- TestSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
A Test program that shows how to load a Site Catalog, and query for all sites.
- TestSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site
-
A Test program that shows how to load a Site Catalog, and query for all sites.
- TestSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.TestSiteCatalog
- TestSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.TestSiteCatalog
- TestTPT - Class in edu.isi.pegasus.planner.transfer
-
Client for testing the TPT class.
- TestTPT() - Constructor for class edu.isi.pegasus.planner.transfer.TestTPT
- TestTransformationCatalog - Class in edu.isi.pegasus.planner.catalog.transformation
-
A Test program that shows how to load a Replica Catalog, and query for entries sites.
- TestTransformationCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TestTransformationCatalog
- TestVORSSiteCatalog - Class in edu.isi.pegasus.planner.catalog.site
-
A Test program that shows how to load a Site Catalog, and query for all sites.
- TestVORSSiteCatalog() - Constructor for class edu.isi.pegasus.planner.catalog.site.TestVORSSiteCatalog
- Text - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
It gets the information about a pool by reading the multiline site catalog that is in a multiline format.
- Text - Class in edu.isi.pegasus.planner.catalog.transformation.impl
-
A File based Transformation Catalog where each entry spans multiple lines.
- Text() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.impl.Text
-
Default constructor.
- Text(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The private constructor that is called only once, when the Singleton is invoked for the first time.
- Text(String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.Text
-
The private constructor that is called to return a non singleton instance of the class.
- TEXT_FORMAT - Static variable in class edu.isi.pegasus.planner.client.TCConverter
-
The textual format.
- TEXT_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
The name of the class that connects to an multi line Text based Site Catalog.
- TEXT_READ_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
- TEXT_READ_VALUE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants for multiline text pool read.
- ThreadPool - Class in edu.isi.pegasus.planner.refiner
-
This maintains a pool of authenticate threads that authenticate against a particular resource.
- ThreadPool(PegasusProperties, Set) - Constructor for class edu.isi.pegasus.planner.refiner.ThreadPool
-
The overloaded constructor.
- ThreadPool.AuthenticateThread - Class in edu.isi.pegasus.planner.refiner
-
A thread as an inner class, that authenticates against one particular pool.
- ThreadPool.ConditionVariable - Class in edu.isi.pegasus.planner.refiner
-
A wrapper around an int that acts as a Condition Variable, and is used as such.
- TIME_END - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- TIME_END - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- TIME_START - Static variable in interface edu.isi.ikcap.workflows.util.logging.LoggingKeys
- TIME_START - Static variable in class edu.isi.pegasus.common.logging.LoggingKeys
- timeMap - Variable in class edu.isi.pegasus.planner.provisioner.OccupationDiagram
- TIMEOUT_VALUE - Static variable in class edu.isi.pegasus.planner.refiner.Authenticate
-
The timeout in seconds.
- TIMESTAMP_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The workflow timestamp.
- timeString - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- timeStringLock - Static variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- tlevel - Variable in class edu.isi.pegasus.planner.provisioner.Node
- toArchitecture() - Method in class edu.isi.pegasus.planner.invocation.Uname
-
An adapter method to convert the uname object to the architecture object.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Condor
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.ENV
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Globus
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Hints
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns a condor description that can be used to put the contents of the namespace into the condor submit file during code generation.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Selector
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- toCondor() - Method in class edu.isi.pegasus.planner.namespace.Stat
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- toDOT() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the DOT description of the object.
- toDOT() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the DOT description of the object.
- toDOT() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the DOT description of the object.
- toDOT(Writer, String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the DOT description of the object.
- toDOT(Writer, String) - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns the DOT description of the object.
- toDOT(Writer, String) - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the DOT description of the object.
- toFile(String, String) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Writes out to a file, a string.
- toJson() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Converts the planner metrics to JSON
- toJson() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Converts the planner metrics to JSON
- toJVMOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Converts the vds properties that need to be passed to the jvm as an option.
- Token - Interface in edu.isi.pegasus.planner.parser.tokens
-
Base class for the tokens passed from the Text Scanner to the parser.
- toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Returns the textual description of the contents of
GlobusVersion
object in the multiline format. - toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns the textual description of the contents of
GridFTPServer
object in the multiline format. - toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Returns the textual description of the contents of
JobManager
object in the multiline format. - toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Returns the textual description of the contents of
LRC
object in the multiline format. - toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Returns the textual description of the contents of
PoolConfig
object in the multiline format. - toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns the textual description of the contents of
SiteInfo
object in the multiline format. - toMultiLine() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Returns the textual description of the contents of
WorkDir
object in the multiline format. - toMultiLine() - Method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the textual description of the contents of
Profile
object in the multiline format. - toMultiLine(PoolConfig) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Returns the String description of the contents of
PoolConfig
object passed. - toNode - Variable in class edu.isi.pegasus.planner.provisioner.Edge
- toOptions() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Generates the argument string corresponding to these options that can be used to invoke Pegasus.
- topNode - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- Topological - Class in edu.isi.pegasus.planner.partitioner
-
Does a topological sort on the Partition.
- Topological(Partition) - Constructor for class edu.isi.pegasus.planner.partitioner.Topological
-
The overloaded constructor.
- topologicalOrderingRequired() - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
A boolean indicating whether ordering is important while traversing through the aggregated job.
- topologicalOrderingRequired() - Method in class edu.isi.pegasus.planner.cluster.aggregator.SeqExec
-
A boolean indicating whether ordering is important while traversing through the aggregated job.
- topologicalOrderingRequired() - Method in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
A boolean indicating whether ordering is important while traversing through the aggregated job.
- topologicalSortIterator() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns an iterator for the graph that traverses in topological sort order.
- topologicalSortIterator() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns an iterator for the graph that traverses in topological sort order.
- topologicalSortIterator() - Method in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
Returns an iterator for the graph that traverses in topological sort order.
- topologicalSortIterator() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
Returns an iterator for the graph that traverses in topological sort order.
- TopologicalSortIterator - Class in edu.isi.pegasus.planner.partitioner.graph
-
Does a topological sort on the Partition.
- TopologicalSortIterator(Graph) - Constructor for class edu.isi.pegasus.planner.partitioner.graph.TopologicalSortIterator
-
The overloaded constructor.
- toPrettyJson() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Converts the planner metrics to JSON
- toPrettyJson() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Converts the planner metrics to JSON
- toString() - Method in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
-
Format a message in CEDPS Best Practices format.
- toString() - Method in class edu.isi.pegasus.common.util.PegasusURL
-
The contents represented as a string
- toString() - Method in class edu.isi.pegasus.common.util.Version
- toString() - Method in class edu.isi.pegasus.gridftp.FileInfo
- toString() - Method in class edu.isi.pegasus.gridftp.GridFTPConnection.StringBuilderDataSink
- toString() - Method in class edu.isi.pegasus.gridftp.GridFTPURL
- toString() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the string description of the object.
- toString() - Method in class edu.isi.pegasus.planner.catalog.classes.SysInfo
-
Returns the output of the data class as string.
- toString() - Method in class edu.isi.pegasus.planner.catalog.replica.ReplicaCatalogEntry
-
Converts the contents into a string.
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Writes out the object as a string.
- toString() - Method in enum edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
-
Override of the toString method to return
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GlobusVersion
-
Returns the textual description of the contents of
GlobusVersion
object. - toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
- toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns the textual description of the contents of
LRC
object. - toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Returns the textual description of the contents of
JobManager
object. - toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Returns the textual description of the contents of
LRC
object. - toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns the textual description of the contents of
SiteInfo
object. - toString() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Returns the textual description of the contents of
WorkDir
object. - toString() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
-
Returns the string value of the architecture.
- toString() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
-
Returns the string value of the operating system.
- toString() - Method in class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Returns the output of the data class as string.
- toString() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
gets the String mVersion of the data class
- toString() - Method in class edu.isi.pegasus.planner.classes.ADag
-
Returns the String description of the dag associated with this object.
- toString() - Method in class edu.isi.pegasus.planner.classes.AggregatedJob
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.AuthenticateRequest
-
Returns a string version of this.
- toString() - Method in class edu.isi.pegasus.planner.classes.CompoundTransformation
-
Converts object to String
- toString() - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Returns the a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.DAGJob
-
Returns a textual description of the DAG Job.
- toString() - Method in class edu.isi.pegasus.planner.classes.Data
-
Returns the String version of the data object, which is in human readable form.
- toString() - Method in class edu.isi.pegasus.planner.classes.DAXJob
-
Returns a textual description of the DAX Job.
- toString() - Method in class edu.isi.pegasus.planner.classes.FileTransfer
-
Returns a textual interpretation of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.NameValue
-
Writes out the contents of the class to a String in form suitable for displaying.
- toString() - Method in class edu.isi.pegasus.planner.classes.Notifications
-
Returns a String description of the object
- toString() - Method in class edu.isi.pegasus.planner.classes.PCRelation
-
Returns the textual description.
- toString() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the String version of the data object, which is in human readable form.
- toString() - Method in class edu.isi.pegasus.planner.classes.PlannerCache
- toString() - Method in class edu.isi.pegasus.planner.classes.PlannerMetrics
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.classes.PlannerOptions
-
Returns the textual description of all the options that were set for the planner.
- toString() - Method in class edu.isi.pegasus.planner.classes.Profile
-
This method returns a string of the contents of this object.
- toString() - Method in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
Returns the textual description of the data class.
- toString() - Method in class edu.isi.pegasus.planner.classes.ReplicaStore
-
Returns the textual description of the data class.
- toString() - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns the textual description of the contents of the object
- toString() - Method in class edu.isi.pegasus.planner.classes.TransferJob
-
Returns a textual description of the Transfer Job.
- toString() - Method in class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
Returns a textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.code.generator.SendMetricsResult
- toString() - Method in class edu.isi.pegasus.planner.dax.Edge
- toString() - Method in class edu.isi.pegasus.planner.dax.Executable
- toString() - Method in class edu.isi.pegasus.planner.dax.Invoke
-
Returns the object as String
- toString() - Method in class edu.isi.pegasus.planner.dax.Transformation
- toString() - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Returns the contents as String.
- toString() - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser3.Arguments
-
Returns the arguments as string
- toString() - Method in class edu.isi.pegasus.planner.parser.tokens.Identifier
-
Returns the textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
-
The textual representation of the graph node.
- toString() - Method in class edu.isi.pegasus.planner.partitioner.graph.LabelBag
-
Returns a textual description of the Bag.
- toString() - Method in class edu.isi.pegasus.planner.partitioner.graph.MapGraph
-
The textual representation of the graph node.
- toString() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns a String version of the object.
- toString() - Method in class edu.isi.pegasus.planner.ranking.Ranking
-
Returns a textual description.
- toString() - Method in class edu.isi.pegasus.planner.refiner.Authenticate.HostPort
-
Returns the string version of this object.
- toString() - Method in class edu.isi.pegasus.planner.selector.replica.Regex.Rank
-
Returns the textual representation of this
- toString() - Method in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Writes out the contents of the class to a String in form suitable for displaying.
- toString() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.SiteTransfer
-
Returns the textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
Returns the textual description of the object.
- toString() - Method in class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
Returns a textual description of the state as (stageinRemote,interRemote,stageoutRemote).
- toString() - Method in class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
Returns a textual description of the state as (stageinRemote,interRemote,stageoutRemote,stageinTPT,interTPT,stageOutTPT).
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Arguments
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.File
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Status
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Converts the active state into something meant for human consumption.
- toString(Writer) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Converts the active state into something meant for human consumption.
- toString(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Writes out the contents of the object as a String
- toString(String) - Method in class edu.isi.pegasus.planner.classes.TCMap
-
Returns a textual description of the object.
- toString(String) - Method in class edu.isi.pegasus.planner.namespace.Dagman
-
Converts the contents of the map into the string that can be put in the Condor file for printing.
- TOTAL_MEM - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the total memory.
- TOTAL_NODES - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the total number of nodes.
- TOTAL_SIZE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
The constant to be passed to the accessor functions to get or set the total size.
- TOTAL_SIZE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The constant to be passed to the accessor functions to get or set the total space available.
- totalET - Variable in class edu.isi.pegasus.planner.provisioner.Estimator
- toTCString() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Prints out a TC file format String.
- toText(TransformationCatalogEntry, String, String) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
Converts the transformation catalog entry object to the multi line textual representation.
- toTextFormat(TransformationStore) - Static method in class edu.isi.pegasus.planner.catalog.transformation.client.TCFormatUtility
-
Converts the transformations into multi line text format
- toXML() - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Returns the xml description of the object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Returns the xml description of the object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPBandwidth
-
Returns the XML description of the contents of Gridftp object.
- toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.GridFTPServer
-
Returns the XML description of the contents of
LRC
object. - toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
Returns the XML description of the contents of
JobManager
object. - toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.LRC
-
Returns the XML description of the contents of
LRC
object. - toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.PoolConfig
-
Returns the XML description of the contents of
PoolConfig
object. - toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
Returns the XML description of the contents of
SiteInfo
object. - toXML() - Method in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Returns the XML description of the contents of
WorkDir
object. - toXML() - Method in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Returns an xml output of the contents of the data class.
- toXML() - Method in class edu.isi.pegasus.planner.classes.Profile
-
This method returns an xml of the contents of this object.
- toXML() - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the xml description of the object.
- toXML() - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Returns the interaction assertions as a XML blob.
- toXML() - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
-
Returns the interaction assertions as a XML blob.
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Generates a DAX representation.
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Write the XML representation of this object
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Edge
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Executable
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.File
-
Write the file object
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Invoke
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.MetaData
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.PFN
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Profile
- toXML(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Transformation
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.CatalogType
-
Write the XML representation of this object
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.DAG
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.DAX
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Edge
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Executable
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.File
-
Write the file object, with indent level N
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Invoke
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Job
-
Overrides Base TOXML method.
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.MetaData
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.PFN
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Profile
- toXML(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Transformation
- toXML(XMLWriter, int, String) - Method in class edu.isi.pegasus.planner.dax.File
-
Write the file object as XML but render it as the elementname
- toXML(PoolConfig) - Method in class edu.isi.pegasus.planner.client.SCClient
-
Returns the XML description of the contents of
PoolConfig
object passed, conforming to pool config schema found at http://pegasus.isi.edu/schema/sc-2.0.xsd. - toXML(Writer) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Returns the xml description of the object.
- toXML(Writer) - Method in class edu.isi.pegasus.planner.provenance.pasoa.producer.InMemory
-
Returns the xml description of the object.
- toXML(Writer) - Method in interface edu.isi.pegasus.planner.provenance.pasoa.XMLProducer
-
Returns the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.common.util.XMLOutput
-
Convenience adaptor method invoking the equivalent of:
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Connection
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.Directory
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.FileServer
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.GridGateway
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeFS
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeScratch
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.HeadNodeStorage
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.InternalMountPoint
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.LocalDirectory
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SharedDirectory
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.SiteStore
-
Writes out the contents of the replica store as XML document
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.StorageType
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
Writes out the xml description of the object.
- toXML(Writer, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.WorkerSharedDirectory
-
Writes out the xml description of the object.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.common.util.XMLOutput
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Architecture
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.ArgEntry
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.ArgVector
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Descriptor
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.EnvEntry
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Environment
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Fifo
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Ignore
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Job
-
Dumps the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Machine
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.MachineInfo
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.MachineSpecific
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Regular
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.StatCall
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.StatInfo
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Status
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Temporary
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.Usage
-
Dump the state of the current element as XML output.
- toXML(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Dump the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.ArgString
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.ArgVector
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.CommandLine
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.Data
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusFailure
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusRegular
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSignal
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.JobStatusSuspend
-
Dumps the state of the current element as XML output.
- toXML(String) - Method in class edu.isi.pegasus.planner.invocation.WorkingDir
-
Dumps the state of the current element as XML output.
- toXML(String, String) - Method in class edu.isi.pegasus.common.util.XMLOutput
-
Dumps the state of the current element as XML output.
- toXMLParent(XMLWriter) - Method in class edu.isi.pegasus.planner.dax.Edge
- toXMLParent(XMLWriter, int) - Method in class edu.isi.pegasus.planner.dax.Edge
- TPT - Class in edu.isi.pegasus.planner.transfer
-
A common class, that builds up the third party state for the sites from the properties file.
- TPT() - Constructor for class edu.isi.pegasus.planner.transfer.TPT
-
The default constructor.
- TPT(PegasusProperties) - Constructor for class edu.isi.pegasus.planner.transfer.TPT
-
The overloaded constructor.
- TPT.TPTState - Class in edu.isi.pegasus.planner.transfer
-
An inner class that holds the third party state for a particular site.
- TPTGUC - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that is used to create transfer jobs that callout to the new globus-url-copy client, that support multiple file transfers
- TPTGUC(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
-
The overloaded constructor, that is called by the Factory to load the class.
- TPTState() - Constructor for class edu.isi.pegasus.planner.transfer.TPT.TPTState
-
The default constructor.
- TRACE_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a DEBUG message.
- TRACE_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a DEBUG message.
- trackInCaches(Job) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Tracks the files created by a job in the both the planner and workflow cache The planner cache stores the put URL's and the GET URL is stored in the workflow cache.
- trackInPlannerCache(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Inserts an entry into the planner cache as a put URL.
- trackInPlannerCache(String, String, String, FileServerType.OPERATION) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Inserts an entry into the planner cache as a put URL.
- trackInWorkflowCache(String, String, String) - Method in class edu.isi.pegasus.planner.refiner.TransferEngine
-
Inserts an entry into the workflow cache that is to be written out to the submit directory.
- trackLFNAddOn(String, String, String) - Method in class edu.isi.pegasus.planner.transfer.mapper.impl.Hashed
-
Tracks the lfn with addOn's on the various sites.
- transfer - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
- Transfer - Class in edu.isi.pegasus.planner.transfer.implementation
-
The implementation that creates transfer jobs referring to the python based transfer script distributed with Pegasus since version 3.0
- Transfer - Class in edu.isi.pegasus.planner.transfer.sls
-
This uses the transfer executable distributed with Pegasus to do the second level staging.
- Transfer() - Constructor for class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The default constructor.
- Transfer(PegasusBag) - Constructor for class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The overloaded constructor, that is called by the Factory to load the class.
- TRANSFER() - Constructor for enum edu.isi.pegasus.planner.dax.File.TRANSFER
- TRANSFER_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key, that when associated with transfer jobs determines the arguments with which the transfer executable is invoked.
- TRANSFER_EXECUTABLE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
- TRANSFER_EXECUTABLE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies transfer of executable
- TRANSFER_IP_FILES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies transfer of input files.
- TRANSFER_MANDATORY - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The mode where the transfer for this file to the pool is constructed and the transfer job fails if the transfer fails.
- TRANSFER_NOT - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The mode where the transfer for this file is not constructed.
- TRANSFER_OP_FILES_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that specifies transfer of input files.
- TRANSFER_OPTIONAL - Static variable in class edu.isi.pegasus.planner.classes.PegasusFile
-
The mode where the transfer for this file to the pool is constructed, but the transfer job should not fail if the transfer fails.
- TRANSFER_PROXY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key if associated with a job, results in an explicit transfer of the proxy from the submit host to the remote site, instead of banking upon CondorG to transfer the proxy.
- TRANSFER_SLS_ARGUMENTS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key, that when associated with transfer jobs determines the arguments with which the transfer executable is invoked.
- TRANSFER_SLS_THREADS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key, that when associated with transfer jobs determines the number of threads that pegasus-transfer uses to do the transfer
- TRANSFER_THREADS_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the profile key, that when associated with transfer jobs determines the number of threads that pegasus-transfer uses to do the transfer
- TRANSFER_UNIVERSE - Static variable in class edu.isi.pegasus.planner.refiner.Engine
- TRANSFER_UNIVERSE - Static variable in interface edu.isi.pegasus.planner.transfer.Implementation
-
The universe that applies for the transfer jobs.
- TransferChain() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Chain.TransferChain
-
The default constructor.
- TransferContainer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.BalancedCluster.TransferContainer
-
The default constructor.
- TransferContainer() - Constructor for class edu.isi.pegasus.planner.transfer.refiner.Bundle.TransferContainer
-
The default constructor.
- TransferEngine - Class in edu.isi.pegasus.planner.refiner
-
The transfer engine, which on the basis of the pools on which the jobs are to run, adds nodes to transfer the data products.
- TransferEngine(ADag, PegasusBag, List<Job>, List<Job>) - Constructor for class edu.isi.pegasus.planner.refiner.TransferEngine
-
Overloaded constructor.
- TransferImplementationFactoryException - Exception in edu.isi.pegasus.planner.transfer.implementation
-
Class to notify of failures while instantiating Transfer Implementations.
- TransferImplementationFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
Constructs a
TransferImplementationFactoryException
with no detail message. - TransferImplementationFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
Constructs a
TransferImplementationFactoryException
with the specified detailed message. - TransferImplementationFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
Constructs a
TransferImplementationFactoryException
with the specified detailed message and a cause. - TransferImplementationFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.implementation.TransferImplementationFactoryException
-
Constructs a
TransferImplementationFactoryException
with the specified detailed message and a cause. - transferImplementationTable() - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Singleton access to the transfer implementation table.
- transferInRange(int) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns whether the transfer value for the mode is in range or not.
- TransferJob - Class in edu.isi.pegasus.planner.classes
-
This is a data class that stores the contents of the transfer job that transfers the data.
- TransferJob() - Constructor for class edu.isi.pegasus.planner.classes.TransferJob
-
The default constructor.
- TransferJob(Job) - Constructor for class edu.isi.pegasus.planner.classes.TransferJob
-
The overloaded construct that constructs a GRMS job by wrapping around the
Job
job. - transferOutput(GraphNode) - Method in class edu.isi.pegasus.planner.refiner.DataReuseEngine
-
Returns whether a user wants output transferred for a node or not.
- TransferRefinerFactoryException - Exception in edu.isi.pegasus.planner.transfer.refiner
-
Class to notify of failures while instantiating Transfer Refiners.
- TransferRefinerFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
Constructs a
TransferRefinerFactoryException
with no detail message. - TransferRefinerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
Constructs a
TransferRefinerFactoryException
with the specified detailed message. - TransferRefinerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
Constructs a
TransferRefinerFactoryException
with the specified detailed message and a cause. - TransferRefinerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.transfer.refiner.TransferRefinerFactoryException
-
Constructs a
TransferRefinerFactoryException
with the specified detailed message and a cause. - transferRefinerTable() - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Singleton access to the transfer refiner table.
- TransferState() - Constructor for class edu.isi.pegasus.planner.transfer.RemoteTransfer.TransferState
-
The default constructor.
- transferWorkerPackage() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It specifies if the worker package needs to be staged to the remote site or not.
- Transformation - Class in edu.isi.pegasus.planner.dax
-
This Object is used to create a complex Transformation.
- Transformation(Transformation) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
-
Copy Constructor
- Transformation(String) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
-
Create a new Transformation object
- Transformation(String, String, String) - Constructor for class edu.isi.pegasus.planner.dax.Transformation
-
Create a new Transformation Object
- TRANSFORMATION - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserved word "tr".
- TRANSFORMATION_CATALOG - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the handle to the transformation catalog.
- TRANSFORMATION_MAPPER - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the handle to the Transformation Mapper.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The logical name of kickstart
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The name of the underlying transformation that is queried for in the Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The logical name of the transformation that creates directories on the remote execution pools.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The logical name of the transformation that creates directories on the remote execution pools.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The logical name of the worker package
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The logical name of the transformation that removes directories on the remote execution pools.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The name of the underlying transformation that is queried for in the Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The name of the underlying transformation that is queried for in the Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The name of the underlying transformation that is queried for in the Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The name of the underlying transformation that is queried for in the Transformation Catalog.
- TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The name of the underlying transformation that is queried for in the Transformation Catalog.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The transformation namespace for the cluster jobs.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The transformation namespace for the kickstart
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The transformation namespace for the job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The transformation namespace for the create dir jobs.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The transformation namespace for the create dir jobs.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The transformation namespace for the worker package
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The transformation namespace for the create dir jobs.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The transformation namespace for the transfer job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The transformation namespace for the transfer job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The transformation namespace for the transfer job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The transformation namespace for the transfer job.
- TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The transformation namespace for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
The version number for the derivations for cluster jobs
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
The version number for kickstart.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.cleanup.Cleanup
-
The version number for the job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.DefaultImplementation
-
The version number for the derivations for create dir jobs.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.createdir.HourGlass
-
The version number for the derivations for create dir jobs.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The version number for the worker package.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.RemoveDirectory
-
The version number for the derivations for create dir jobs.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
The version number for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
The version number for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.T2
-
The version number for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
The version number for the transfer job.
- TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.sls.Transfer
-
The version number for the transfer job.
- TransformationCatalog - Interface in edu.isi.pegasus.planner.catalog
-
This class is an interface to the various TxCatalog implementations that Pegasus will use.
- TransformationCatalogEntry - Class in edu.isi.pegasus.planner.catalog.transformation
-
An object of this class corresponds to a tuple in the Transformation Catalog.
- TransformationCatalogEntry() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The basic constructor
- TransformationCatalogEntry(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Optimized Constructor
- TransformationCatalogEntry(String, String, String, String, String, TCType, Profiles, SysInfo) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Overloaded constructor.
- TransformationCatalogEntry(String, String, String, String, String, TCType, List, VDSSysInfo) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
Optimized Constructor
- TransformationCatalogReservedWord - Class in edu.isi.pegasus.planner.parser.tokens
-
Class to capture reserved words for the textual format of Transformation Catalog
- TransformationCatalogReservedWord(int) - Constructor for class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
Initializes an instance of a reserved word token.
- TransformationCatalogTextParser - Class in edu.isi.pegasus.planner.parser
-
Parses the input stream and generates the TransformationStore as output.
- TransformationCatalogTextParser(Reader, LogManager) - Constructor for class edu.isi.pegasus.planner.parser.TransformationCatalogTextParser
-
Initializes the parser with an input stream to read from.
- TransformationCatalogTextScanner - Class in edu.isi.pegasus.planner.parser
-
Implements the scanner for reserved words and other tokens that are generated from the input stream for the Transformation Catalog.
- TransformationCatalogTextScanner(Reader) - Constructor for class edu.isi.pegasus.planner.parser.TransformationCatalogTextScanner
-
Starts to scan the given stream.
- TransformationFactory - Class in edu.isi.pegasus.planner.catalog.transformation
-
A factory class to load the appropriate implementation of Transformation Catalog as specified by properties.
- TransformationFactory() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.TransformationFactory
- TransformationFactoryException - Exception in edu.isi.pegasus.planner.catalog.transformation
-
Class to notify of failures while instantiating Transformation Catalog implementations.
- TransformationFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
Constructs a
TransformationFactoryException
with no detail message. - TransformationFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
Constructs a
TransformationFactoryException
with the specified detailed message. - TransformationFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
Constructs a
TransformationFactoryException
with the specified detailed message and a cause. - TransformationFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.transformation.TransformationFactoryException
-
Constructs a
TransformationFactoryException
with the specified detailed message and a cause. - TransformationSelector - Class in edu.isi.pegasus.planner.selector
- TransformationSelector() - Constructor for class edu.isi.pegasus.planner.selector.TransformationSelector
- TransformationStore - Class in edu.isi.pegasus.planner.catalog.transformation.classes
-
A container data class that is used to store transformations.
- TransformationStore() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.TransformationStore
-
The default constructor.
- translateException(Exception, String) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection
-
Translate the exception e into one of the subclasses of GridFTPException
- traverse(File, String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
Traverses a directory and populates the mappings in memory
- treatCacheAsRC() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to treat the entries in the cache files as a replica catalog or not.
- trigger - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- TRUE - edu.isi.pegasus.planner.dax.File.TRANSFER
- TRUE - Static variable in class edu.isi.pegasus.common.util.Boolean
-
The character representation of a
true
value. - type - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- type - Variable in class edu.isi.pegasus.planner.catalog.transformation.TransformationCatalogEntry
-
The type of transformation.
- type - Variable in class edu.isi.pegasus.planner.client.TCClient
- TYPE - Static variable in class edu.isi.pegasus.planner.parser.tokens.TransformationCatalogReservedWord
-
token value for the reserver word "osversion".
- TYPE() - Constructor for enum edu.isi.pegasus.common.credential.CredentialHandler.TYPE
- TYPE() - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- TYPE(String) - Constructor for enum edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
-
The constructor
- TYPE_DESCRIPTION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for type description
- TYPE_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.MRC
-
The property key that designates the type of replica catalog to connect to.
- TYPE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for task type
- TYPE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The name of the key that denotes the type of the job.
- TYPE_SETUP - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation to be loaded for setup tx jobs.
- TYPE_STAGE_IN - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation be loaded for stage in jobs.
- TYPE_STAGE_INTER - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation be loaded for inter pool jobs.
- TYPE_STAGE_OUT - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation be loaded for stage out jobs.
- TYPE_SYMLINK_STAGE_IN - Static variable in class edu.isi.pegasus.planner.transfer.implementation.ImplementationFactory
-
The constant designating the implementation to be loaded for symbolic tx jobs.
- typeInRange(int) - Static method in class edu.isi.pegasus.planner.classes.Job
-
Returns whether the job type value for the job is in range or not.
- typeNeedsCleanUp(int) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Checks to see which job types are required to be looked at for cleanup.
- typeNeedsCleanUp(GraphNode) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Checks to see which job types are required to be looked at for cleanup.
- typeRecursive() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns whether the job is recursive or not.
- typeStageOut(int) - Method in class edu.isi.pegasus.planner.refiner.cleanup.InPlace
-
Checks to see if job type is a stageout job type.
- typeToString() - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns the type associated with the logical file.
- typeValid(int) - Method in class edu.isi.pegasus.planner.classes.PegasusFile
-
Returns whether the type of file value is valid or not.
U
- Uname - Class in edu.isi.pegasus.planner.invocation
-
The uname element.
- Uname() - Constructor for class edu.isi.pegasus.planner.invocation.Uname
-
The default constructor
- Uname(String) - Constructor for class edu.isi.pegasus.planner.invocation.Uname
-
Constructs a piece of data.
- unameToArchitecture(Uname) - Static method in class edu.isi.pegasus.planner.invocation.Uname
-
An adapter method to convert the uname object to the architecture object.
- UNASSIGNED_JOB - Static variable in class edu.isi.pegasus.planner.classes.Job
-
Denotes a job that does not fall into the other categories.
- UNDEFINED_ARCHMODE_VALUE - Static variable in class edu.isi.pegasus.planner.invocation.Uname
-
The undefined value for archmode attribute.
- UNDEFINED_READ_VALUE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants for mode not defined.
- UNDEFINED_SITE - Static variable in class edu.isi.pegasus.planner.parser.dax.DAXParser3
-
Constant denoting an undefined site
- UNDEFINED_SITE_NAME - Static variable in class edu.isi.pegasus.planner.classes.ReplicaLocation
-
The site name that is associated in the case the resource handle is not specified with the PFN.
- unescape(String) - Method in class edu.isi.ikcap.workflows.util.logging.Escape
-
Transforms a given string by unescaping all characters that are prefixed with the escape character.
- unescape(String) - Method in class edu.isi.pegasus.common.util.Escape
-
Transforms a given string by unescaping all characters that are prefixed with the escape character.
- unescape(String) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Unescapes previously backslashed characters.
- unicore - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
- UniqueMerge - Class in edu.isi.pegasus.planner.namespace.aggregator
-
Merges profile as a delimiter separated list.
- UniqueMerge() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.UniqueMerge
- UNIVERSE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the universe.
- UNIVERSE - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "universe".
- UNIVERSE_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
- UNIVERSE_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of the key that denotes the condor universe key.
- Unknown - edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
- UNKNOWN_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The key is unknown.
- unknownKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Namespace
-
Warns about an unknown profile key and constructs it anyway.
- unknownKey(String, String) - Method in class edu.isi.pegasus.planner.namespace.Pegasus
-
Warns about an unknown profile key and constructs it anyway.
- unknownNamespaceMessage(String) - Static method in class edu.isi.pegasus.planner.classes.Profile
-
Returns the unknown namespace message.
- unmarkArgs() - Method in class edu.isi.pegasus.planner.refiner.MainEngine
-
Deprecated.
- unsetInstalled() - Method in class edu.isi.pegasus.planner.dax.Executable
-
Unset the installed flag on the executable.
- unSupportedNestingOfElements(String, String) - Method in class edu.isi.pegasus.planner.parser.StackBasedXMLParser
-
Called when certain element nesting is allowed in the XML schema but is not supported in the code as yet.
- UNTAR_DERIVATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The logical name of the transformation for the untar job.
- UNTAR_DERIVATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The derivation namespace for the untar job.
- UNTAR_DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The version number for the derivations for untar job.
- UNTAR_PREFIX - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
Constant suffix for the names of the deployment nodes.
- UNTAR_TRANSFORMATION_NAME - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The logical name of the worker package
- UNTAR_TRANSFORMATION_NAMESPACE - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The transformation namespace for the worker package
- UNTAR_TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.refiner.DeployWorkerPackage
-
The version number for the worker package.
- Update - Class in edu.isi.pegasus.planner.namespace.aggregator
-
An implementation of the Aggregator interface that always takes the new profile value.
- Update() - Constructor for class edu.isi.pegasus.planner.namespace.aggregator.Update
- updateDownLen() - Method in class edu.isi.pegasus.planner.provisioner.Node
- updateETs() - Method in class edu.isi.pegasus.planner.provisioner.Estimator
- updateLeftBound(long, TreeSet) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
update EST(earliest start time) of this task.
- updateLFNMap(String, String) - Method in class edu.isi.pegasus.planner.classes.DagInfo
-
Updates the lfn map, that contains the mapping of an lfn with the type.
- updateProfiles(Profiles) - Method in class edu.isi.pegasus.planner.classes.Job
-
Updates all the profile namespaces with the information specified in list of profile objects passed.
- updateProfiles(TransformationCatalogEntry) - Method in class edu.isi.pegasus.planner.classes.Job
-
Updates all the profile namespaces with the information associated in the transformation catalog for this job.
- updateProfiles(PegasusProperties) - Method in class edu.isi.pegasus.planner.classes.Job
-
Updates all the profile namespaces with the information specified by the user in the properties file, that apply to this job.
- updateProfiles(List) - Method in class edu.isi.pegasus.planner.classes.Job
-
Updates all the profile namespaces with the information specified in list of profile objects passed.
- updateReplacementTable(List, Job) - Method in class edu.isi.pegasus.planner.cluster.Horizontal
-
Updates the replacement table.
- updateRightBound(long, TreeSet) - Method in class edu.isi.pegasus.planner.provisioner.Node
-
update LFT(latest finish time) of this task.
- updateSiteStoreAndOptions(SiteStore, PlannerOptions) - Method in class edu.isi.pegasus.planner.common.PegasusConfiguration
-
Updates Site Store and options based on the planner options set by the user on the command line
- updateUpLen() - Method in class edu.isi.pegasus.planner.provisioner.Node
- upLen - Variable in class edu.isi.pegasus.planner.provisioner.Node
- UPWARD_RANK - Static variable in class edu.isi.pegasus.planner.selector.site.heft.HeftBag
-
The constant to be passed to the accessor functions to get or set the upward rank for a node.
- url - Variable in class edu.isi.pegasus.gridftp.GridFTPURL
- URL - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The constant to be passed to the accessor functions to get or set the url.
- URL_PRFIX_PROPERTY_KEY - Static variable in class edu.isi.pegasus.planner.catalog.replica.impl.Directory
-
The name of the key that specifies the url prefix to be associated with the PFN's
- usage() - Static method in class edu.isi.pegasus.gridftp.PegasusGridFTP
- usage(String) - Static method in class edu.isi.pegasus.gridftp.PegasusGridFTP
- Usage - Class in edu.isi.pegasus.planner.invocation
-
This class is contains some excerpt from the getrusage call.
- Usage() - Constructor for class edu.isi.pegasus.planner.invocation.Usage
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- Usage(double, double, int, int, int, int, int, int, int, int, int, int, int, int, int, int) - Constructor for class edu.isi.pegasus.planner.invocation.Usage
-
Full c'tor: All values are provided.
- usecEnd - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- useCondorQuotingForArguments() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether we want to Condor Quote the arguments of the job or not.
- usecStart - Variable in class edu.isi.ikcap.workflows.util.logging.EventLogMessage
- useDeepStorageDirectoryStructure() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to have a deep storage directory structure or not while staging out data to the output site.
- useDoubleNegative(String) - Method in class edu.isi.pegasus.planner.parser.dax.DAXParser2
-
Determines whether to use a doubleNegative or not.
- useExtendedTimeStamp() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It specifies whether to use the extended timestamp format for generation of timestamps that are used to create the random directory name, and for the classads generation.
- useForceInTransfer() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
It specifies whether the underlying transfer mechanism being used should use the force option if available to transfer the files.
- useFullPathToGridStarts(boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Setter method to control whether a full path to Gridstart should be returned while wrapping a job or not.
- useFullPathToGridStarts(boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.NoGridStart
- useFullPathToGridStarts(boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
- useFullPathToGridStarts(boolean) - Method in interface edu.isi.pegasus.planner.code.GridStart
-
Setter method to control whether a full path to Gridstart should be returned while wrapping a job or not.
- useInvoke(Job, String, StringBuffer) - Method in class edu.isi.pegasus.planner.code.gridstart.Kickstart
-
Triggers the creation of the kickstart input file, that contains the the remote executable and the arguments with which it has to be invoked.
- useInvokeInGridStart() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to use invoke in kickstart always or not.
- USER_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The user who submitted the workflow.
- USER_PROPERTY_FILENAME - Static variable in class edu.isi.pegasus.common.util.CommonProperties
-
Basename of the (new) file to read for user properties.
- userExecutablesStagedForJob() - Method in class edu.isi.pegasus.planner.classes.Job
-
Returns whether user executables need to be staged for job or not.
- UserOptions - Class in edu.isi.pegasus.planner.common
-
A Singleton wrapper around the PlannerOptions class to get hold of the options specified by the user to run Pegasus.
- UserOptions(PlannerOptions) - Constructor for class edu.isi.pegasus.planner.common.UserOptions
-
The private constructor that initializes the user options.
- UserPOSTScript - Class in edu.isi.pegasus.planner.code.gridstart
-
A user defined post script.
- UserPOSTScript() - Constructor for class edu.isi.pegasus.planner.code.gridstart.UserPOSTScript
-
The default constructor.
- uses(CatalogType) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Set the file or executable being used by the transformation
- uses(File, File.LINK) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, File.TRANSFER, boolean, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, File.TRANSFER, boolean, boolean, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, File.TRANSFER, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, File.TRANSFER, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(File, File.LINK, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, File.TRANSFER) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, File.TRANSFER, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, File.TRANSFER, boolean, boolean, boolean) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, File.TRANSFER, boolean, boolean, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, File.TRANSFER, boolean, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, File.TRANSFER, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(String, File.LINK, String) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- uses(List<CatalogType>) - Method in class edu.isi.pegasus.planner.dax.Transformation
-
Set the List of files and/or executables being used by the transformation
- uses(List<File>, File.LINK) - Method in class edu.isi.pegasus.planner.dax.AbstractJob
- USES_PMC - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the whether the planner used PMC or not
- useThirdPartyTransferAlways() - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Return a boolean indicating whether the transfers to be done always in a third party transfer mode.
- useThirdPartyTransferAlways() - Method in class edu.isi.pegasus.planner.transfer.implementation.Stork
-
Return a boolean indicating whether the transfers to be done always in a third party transfer mode.
- useThirdPartyTransferAlways() - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Return a boolean indicating whether the transfers to be done always in a third party transfer mode.
- useThirdPartyTransferAlways() - Method in class edu.isi.pegasus.planner.transfer.implementation.TPTGUC
-
Return a boolean indicating whether the transfers to be done always in a third party transfer mode.
- useThirdPartyTransferAlways() - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Return a boolean indicating whether the transfers to be done always in a third party transfer mode.
- useThirdPartyTransferAlways() - Method in interface edu.isi.pegasus.planner.transfer.Implementation
-
Return a boolean indicating whether the transfers to be done always in a third party transfer mode.
- useTimestampForDirectoryStructure() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to use timestamp for directory name creation or not.
- UUID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The key for UUID of the workflow.
V
- v_7_1_0 - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
Predefined Constant for condor version 7.1.0
- v_7_1_2 - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
Predefined Constant for condor version 7.1.2
- v_7_1_3 - Static variable in class edu.isi.pegasus.common.util.CondorVersion
-
Predefined Constant for condor version 7.1.3
- VALID_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The key is a valid key and can be put in the profiles.
- validTypesToString() - Static method in class edu.isi.pegasus.planner.classes.Profile
-
Returns a comma separated string containing the valid namespace types.
- value - Variable in class edu.isi.pegasus.planner.classes.NameValue
-
stores the corresponding value to the name in the pair.
- value - Variable in class edu.isi.pegasus.planner.refiner.ThreadPool.ConditionVariable
-
The int that is associated with this object.
- value - Variable in class edu.isi.pegasus.planner.selector.site.RoundRobin.NameValue
-
Stores the corresponding value to the name in the pair.
- value(String) - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
- valueOf(String) - Static method in enum edu.isi.pegasus.common.credential.CredentialHandler.TYPE
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor.DirectoryTypes
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.catalog.transformation.classes.TCType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.classes.PlannerOptions.CLEANUP_OPTIONS
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.common.PegasusProperties.CLEANUP_SCOPE
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.Executable.ARCH
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.Executable.OS
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.File.LINK
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.File.TRANSFER
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.Invoke.WHEN
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum edu.isi.pegasus.common.credential.CredentialHandler.TYPE
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.classes.Profiles.NAMESPACES
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.Directory.TYPE
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.FileServerType.OPERATION
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.JOB_TYPE
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.SCHEDULER_TYPE
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.GridGateway.TYPE
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor.DirectoryTypes
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.catalog.transformation.classes.TCType
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.classes.PegasusFile.LINKAGE
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.classes.PlannerOptions.CLEANUP_OPTIONS
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.common.PegasusProperties.CLEANUP_SCOPE
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.dax.Executable.ARCH
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.dax.Executable.OS
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.dax.File.LINK
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.dax.File.TRANSFER
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.dax.Invoke.WHEN
-
Returns an array containing the constants of this enum type, in the order they are declared.
- values() - Static method in enum edu.isi.pegasus.planner.dax.Profile.NAMESPACE
-
Returns an array containing the constants of this enum type, in the order they are declared.
- VANILLA_JOBMANAGER_TYPE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.JobManager
-
The jobmanager type associated with the compute jobs.
- VANILLA_UNIVERSE - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
- VANILLA_UNIVERSE - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The condor universe key value for vanilla universe.
- VDS - Static variable in class edu.isi.pegasus.planner.classes.Profile
- VDS_HOME - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry
-
The name of the environment variable VDS_HOME.
- VDS_HOME - Static variable in class edu.isi.pegasus.planner.catalog.site.classes.SiteCatalogEntry3
-
The name of the environment variable VDS_HOME.
- VDS_HOME - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolInfoProvider
-
The name of the environment variable VDS_HOME.
- VDS2PegasusProperties - Class in edu.isi.pegasus.planner.client
-
A Central Properties class that keeps track of all the properties used by Pegasus.
- VDS2PegasusProperties() - Constructor for class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
The default constructor.
- vdsArchToNMIArch(Arch) - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
Returns the NMI Architecture object corresponding to the VDS Arch object
- vdsArchToNMIArch(String) - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
Returns the NMI Architecture object corresponding to the VDS Arch object
- vdsArchToNMIArchMap() - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
Singleton access to the architecture to NMI arch map.
- vdsNS - Variable in class edu.isi.pegasus.planner.classes.Job
-
The Pegasus namespace variable.
- vdsOsToNMIOS(Os) - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
Returns the NMI OS object corresponding to the VDS Os object
- vdsOsToNMIOS(String) - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
Returns the NMI OS object corresponding to the VDS Os object
- vdsOsToNMIOSMap() - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
Singleton access to the os to NMI os map.
- VDSSysInfo - Class in edu.isi.pegasus.planner.catalog.transformation.classes
-
This class keeps the system information associated with a resource or transformation.
- VDSSysInfo() - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
The default constructor.
- VDSSysInfo(Arch, Os, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
The secondary convenience constructor.
- VDSSysInfo(String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
- VDSSysInfo(String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Another convenience constructor that uses all entries as strings.
- VDSSysInfo(String, String, String, String) - Constructor for class edu.isi.pegasus.planner.catalog.transformation.classes.VDSSysInfo
-
Another convenience constructor that uses all entries as strings.
- vdsSysInfo2NMI(VDSSysInfo) - Static method in class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
-
Converts VDS SysInfo to NMI based SysInfo object
- VDSSysInfo2NMI - Class in edu.isi.pegasus.planner.catalog.classes
-
An Adapter class that translates the old ( VDS era ) Arch and Os objects to the new NMI based Architecture and OS objects.
- VDSSysInfo2NMI() - Constructor for class edu.isi.pegasus.planner.catalog.classes.VDSSysInfo2NMI
- vdsToPegasusPropertiesTable() - Static method in class edu.isi.pegasus.planner.client.VDS2PegasusProperties
-
Singleton access to the transfer implementation table.
- vectorToString(String, Vector) - Method in class edu.isi.pegasus.planner.classes.Data
-
It converts the contents of the Vector to a String and returns it.
- vectorToString(String, Vector) - Method in class edu.isi.pegasus.planner.refiner.Engine
-
It prints the contents of the Vector, to a String with the first line being the heading.
- vendorParserClass - Static variable in class edu.isi.pegasus.planner.client.DAXValidator
-
Default parser is the Xerces parser.
- vendorParserClass - Static variable in class edu.isi.pegasus.planner.parser.InvocationParser
-
Default parser is the Xerces parser.
- version - Variable in class edu.isi.pegasus.planner.catalog.transformation.client.Client
- version - Variable in class edu.isi.pegasus.planner.classes.Job
-
The version of the transformation.
- version - Variable in class edu.isi.pegasus.planner.client.TCClient
- version() - Method in class edu.isi.pegasus.common.util.CondorVersion
-
Returns the condor version parsed by executing the condor_version command.
- Version - Class in edu.isi.pegasus.common.util
-
This class solely defines the version numbers of PEGASUS.
- Version() - Constructor for class edu.isi.pegasus.common.util.Version
- VERSION - Static variable in interface edu.isi.pegasus.common.credential.CredentialHandler
-
The version of the API being used.
- VERSION - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The version of the Logging API
- VERSION - Static variable in class edu.isi.pegasus.common.util.Separator
-
This constant defines the separator that denotes a version range.
- VERSION - Static variable in interface edu.isi.pegasus.planner.catalog.SiteCatalog
-
The version of the API
- VERSION - Static variable in interface edu.isi.pegasus.planner.catalog.TransformationCatalog
-
The version of the API
- VERSION - Static variable in interface edu.isi.pegasus.planner.catalog.WorkCatalog
-
The version of the API
- VERSION - Static variable in interface edu.isi.pegasus.planner.cluster.Clusterer
-
The version number associated with this API of Code Generator.
- VERSION - Static variable in interface edu.isi.pegasus.planner.cluster.JobAggregator
-
The version number associated with this API of Job Aggregator.
- VERSION - Static variable in interface edu.isi.pegasus.planner.code.CodeGenerator
-
The version number associated with this API of Code Generator.
- VERSION - Static variable in interface edu.isi.pegasus.planner.code.generator.condor.CondorStyle
-
The version number associated with this API of Code Generator.
- VERSION - Static variable in interface edu.isi.pegasus.planner.code.GridStart
-
The version number associated with this API of GridStart.
- VERSION - Static variable in interface edu.isi.pegasus.planner.code.POSTScript
-
The version number associated with this API of GridStart.
- VERSION - Static variable in interface edu.isi.pegasus.planner.namespace.aggregator.Aggregator
-
The version number associated with this API of Profile Aggregators.
- VERSION - Static variable in class edu.isi.pegasus.planner.namespace.Namespace
-
The version number associated with this API of Profile Namespaces.
- VERSION - Static variable in interface edu.isi.pegasus.planner.parser.dax.Callback
-
The version of the Callback api
- VERSION - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "version".
- VERSION - Static variable in interface edu.isi.pegasus.planner.partitioner.graph.Graph
-
The version number associated with this Graph API.
- VERSION - Static variable in class edu.isi.pegasus.planner.partitioner.Partitioner
-
The version number associated with this API of Code Generator.
- VERSION - Static variable in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupImplementation
-
The version number associated with this API Cleanup CleanupImplementation.
- VERSION - Static variable in interface edu.isi.pegasus.planner.refiner.cleanup.CleanupStrategy
-
The version number associated with this API Cleanup CleanupStrategy.
- VERSION - Static variable in interface edu.isi.pegasus.planner.refiner.createdir.Implementation
-
The version number associated with this API.
- VERSION - Static variable in interface edu.isi.pegasus.planner.refiner.createdir.Strategy
-
The version number associated with this API Cleanup Strategy.
- VERSION - Static variable in interface edu.isi.pegasus.planner.refiner.Refiner
-
The version of the API.
- VERSION - Static variable in interface edu.isi.pegasus.planner.selector.ReplicaSelector
-
The version of this API.
- VERSION - Static variable in class edu.isi.pegasus.planner.selector.site.NonJavaCallout
-
The version number associated with this API of non java callout site selection.
- VERSION - Static variable in interface edu.isi.pegasus.planner.selector.SiteSelector
-
The version of the API of the Site Selector.
- VERSION - Static variable in interface edu.isi.pegasus.planner.transfer.Implementation
-
The version number associated with this API
- VERSION - Static variable in interface edu.isi.pegasus.planner.transfer.mapper.OutputMapper
-
The version of the API of the Output Mapper
- VERSION - Static variable in interface edu.isi.pegasus.planner.transfer.SLS
-
The version associated with the API.
- VERSION_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The class ad key for the version id.
- VERSION_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Key for the version id.
- VersionNumber - Class in edu.isi.pegasus.planner.client
-
This class just prints the current version number on stdout.
- VersionNumber(String) - Constructor for class edu.isi.pegasus.planner.client.VersionNumber
-
ctor: Constructs a new instance with the given application name.
- Vertical - Class in edu.isi.pegasus.planner.cluster
-
The vertical cluster, that extends the Default clusterer and topologically sorts the partition before clustering the jobs into aggregated jobs.
- Vertical() - Constructor for class edu.isi.pegasus.planner.cluster.Vertical
-
The default constructor.
- VERTICAL_CLUSTERING_CLASS - Static variable in class edu.isi.pegasus.planner.cluster.ClustererFactory
-
The name of the class implementing vertical clustering.
- visit(Connection) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Visit the connection object
- visit(Connection) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Visit the connection object
- visit(Connection) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Visit the connection object
- visit(Directory) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Visit Directory site data object
- visit(Directory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Visit the directory object
- visit(Directory) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Visit the directory object
- visit(FileServer) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Visit FileServer site data object
- visit(FileServer) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Visit FileServer site data object
- visit(FileServer) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Visit FileServer site data object
- visit(GridGateway) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Visit the GridGateway object
- visit(GridGateway) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Visit the GridGateway object
- visit(GridGateway) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Visit the GridGateway object
- visit(ReplicaCatalog) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Visit the ReplicaCatalog object
- visit(ReplicaCatalog) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Visit the ReplicaCatalog object
- visit(ReplicaCatalog) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Visit the ReplicaCatalog object
- visit(SiteCatalogEntry) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Visit the Site CatalogEntry object
- visit(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Visit the Site CatalogEntry object
- visit(SiteCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Visit the Site CatalogEntry object
- visit(SiteData) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
- visit(SiteData) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
- visit(SiteStore) - Method in interface edu.isi.pegasus.planner.catalog.site.classes.SiteDataVisitor
-
Visit the SiteStore object
- visit(SiteStore) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
-
Visit the SiteStore object
- visit(SiteStore) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
-
Visit the SiteStore object
W
- warning(SAXParseException) - Method in class edu.isi.pegasus.planner.client.DAXValidator
- warning(SAXParseException) - Method in class edu.isi.pegasus.planner.parser.XMLErrorHandler
-
Logs the warning messages in the SAX parser generates while validating the XML file against an XML Schema.
- WARNING_MESSAGE_LEVEL - Static variable in class edu.isi.pegasus.common.logging.LogManager
-
The level value, to indicate a WARNING error message.
- WARNING_MESSAGE_TYPE - Static variable in class edu.isi.pegasus.common.logging.logger.Default
-
The type value to indicate a WARNING message.
- weight - Variable in class edu.isi.pegasus.planner.provisioner.Node
- WF_NAME_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The classad for the flow id.
- WF_NAME_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Key for the flow id.
- WF_TIME_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The classad for the timestamp.
- WF_TIME_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Key for the timestamp.
- WF_TIMESTAMP_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Braindump
-
The Key for the timestamp.
- WF_UUID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The classad for the workflow uuid
- WHEN() - Constructor for enum edu.isi.pegasus.planner.dax.Invoke.WHEN
- WHEN_TO_TRANSFER_OUTPUT_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.style.CondorC
-
The name of key that designates when to transfer output.
- WHEN_TO_TRANSFER_OUTPUT_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The name of key that designates when to transfer output.
- where() - Method in class edu.isi.pegasus.planner.client.DAXValidator
- where() - Method in class edu.isi.pegasus.planner.parser.InvocationParser
- WHITE_COLOR - Static variable in class edu.isi.pegasus.planner.partitioner.graph.GraphNode
- Whole - Class in edu.isi.pegasus.planner.partitioner
-
This partitioning technique considers the whole DAX as a single partition.
- Whole(GraphNode, Map, PegasusProperties) - Constructor for class edu.isi.pegasus.planner.partitioner.Whole
-
The overloaded constructor.
- windows - edu.isi.pegasus.planner.dax.Executable.OS
- WINDOWS - edu.isi.pegasus.planner.catalog.classes.SysInfo.OS
- WINDOWS - edu.isi.pegasus.planner.dax.Executable.OS
- WINDOWS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- work(String) - Method in class edu.isi.pegasus.common.util.CondorVersion.CondorVersionCallback
-
Callback whenever a line is read from the stream by the StreamGobbler.
- work(String) - Method in class edu.isi.pegasus.common.util.DefaultStreamGobblerCallback
-
Callback whenever a line is read from the stream by the StreamGobbler.
- work(String) - Method in interface edu.isi.pegasus.common.util.StreamGobblerCallback
-
Callback whenever a line is read from the stream by the StreamGobbler.
- work(String) - Method in class edu.isi.pegasus.planner.catalog.site.impl.OSGMM.ListCallback
-
Callback whenever a line is read from the stream by the StreamGobbler.
- work(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG.GrepCallback
-
Callback whenever a line is read from the stream by the StreamGobbler.
- work(List) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Works on the command contained within one line.
- work(List, String) - Method in class edu.isi.pegasus.planner.client.RCClient
-
Works on the command contained within chunk of lines.
- WorkCatalog - Interface in edu.isi.pegasus.planner.catalog
-
The catalog interface to the Work Catalog, the erstwhile Work DB, that is populated by tailstatd and associates.
- WorkCatalogException - Exception in edu.isi.pegasus.planner.catalog.work
-
Class to notify of failures.
- WorkCatalogException() - Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkCatalogException
- WorkCatalogException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkCatalogException
-
Constructs a
WorkCatalogException
with the specified detailed message. - WorkCatalogException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkCatalogException
-
Constructs a
WorkCatalogException
with the specified detailed message and a cause. - WorkCatalogException(Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkCatalogException
-
Constructs a
WorkCatalogException
with the specified just a cause. - WorkDir - Class in edu.isi.pegasus.planner.catalog.site.impl.old.classes
-
This is a data class that is used to store information about the scratch work directory or the execution mount point on the remote pool.
- WorkDir() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The default constructor.
- WORKDIR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.SiteInfo
-
The constant to be passed to the accessor functions to get or set the List of
WorkDir
objects. - WORKDIR - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
The constant to be passed to the accessor functions to get or set the path to the work directory.
- WORKDIR - Static variable in class edu.isi.pegasus.planner.parser.tokens.SiteCatalogReservedWord
-
token value for the reserved word "workdir".
- WORKDIRINFO - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.classes.WorkDir
-
Array storing the names of the attributes that are stored with the work directory.
- WORKER_NODE_DIRECTORY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
-
The directory in which job needs to execute on worker node tmp.
- WORKER_PACKAGE_MAP - Static variable in class edu.isi.pegasus.planner.classes.PegasusBag
-
The constant to be passed to the accessor functions to get or set the handle to the worker package maps
- WORKERFS_SCRATCH - edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor.DirectoryTypes
- WORKERFS_STORAGE - edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor.DirectoryTypes
- WorkerNodeFS - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes the WorkerNode Filesystem layout.
- WorkerNodeFS() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
The default constructor.
- WorkerNodeFS(WorkerNodeScratch, WorkerNodeStorage) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeFS
-
The overloaded constructor.
- WorkerNodeScratch - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes the scratch area on a head node.
- WorkerNodeScratch() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
The default constructor
- WorkerNodeScratch(LocalDirectory, SharedDirectory) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
The overloaded constructor.
- WorkerNodeScratch(StorageType) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeScratch
-
The overloaded constructor
- WorkerNodeStorage - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes the storage area on worker nodes.
- WorkerNodeStorage() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
The default constructor
- WorkerNodeStorage(LocalDirectory, SharedDirectory) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
The overloaded constructor.
- WorkerNodeStorage(StorageType) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerNodeStorage
-
The overloaded constructor
- WorkerSharedDirectory - Class in edu.isi.pegasus.planner.catalog.site.classes
-
This data class describes the directory shared only amongst worker nodes .
- WorkerSharedDirectory() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerSharedDirectory
-
The default constructor.
- WorkerSharedDirectory(Map<FileServerType.OPERATION, List<FileServer>>, InternalMountPoint) - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.WorkerSharedDirectory
-
The overloaded constructor
- WorkFactory - Class in edu.isi.pegasus.planner.catalog.work
-
This factory loads a work catalog, as specified by the properties.
- WorkFactory() - Constructor for class edu.isi.pegasus.planner.catalog.work.WorkFactory
- WorkFactoryException - Exception in edu.isi.pegasus.planner.catalog.work
-
Class to notify of failures while instantiating Transformation Catalog implementations.
- WorkFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
-
Constructs a
WorkFactoryException
with no detail message. - WorkFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
-
Constructs a
WorkFactoryException
with the specified detailed message. - WorkFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
-
Constructs a
WorkFactoryException
with the specified detailed message and a cause. - WorkFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.catalog.work.WorkFactoryException
-
Constructs a
WorkFactoryException
with the specified detailed message and a cause. - WORKFLOW - Static variable in class edu.isi.pegasus.planner.code.generator.MonitordNotify
-
The constant string to write for work flow notifications.
- WORKFLOW_CACHE_FILE_IMPLEMENTOR - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The name of the Replica Catalog Implementer that is used to write out the workflow cache file in the submit directory.
- WORKFLOW_CACHE_REPLICA_CATALOG_KEY - Static variable in class edu.isi.pegasus.planner.refiner.TransferEngine
-
The name of the source key for Replica Catalog Implementer that serves as cache
- WORKFLOW_ID_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.Stampede
-
The attribute key for workflow id.
- WORKFLOW_ID_PROPERTY - Static variable in class edu.isi.pegasus.planner.code.gridstart.NetloggerPostScript
-
The property to be set for postscript to pick up workflow id
- WorkflowMetrics - Class in edu.isi.pegasus.planner.classes
-
A Workflow metrics class that stores the metrics about the workflow.
- WorkflowMetrics() - Constructor for class edu.isi.pegasus.planner.classes.WorkflowMetrics
-
The default constructor.
- WorkingDir - Class in edu.isi.pegasus.planner.invocation
-
This class is transient for XML parsing.
- WorkingDir() - Constructor for class edu.isi.pegasus.planner.invocation.WorkingDir
-
Default c'tor: Construct a hollow shell and allow further information to be added later.
- WorkingDir(String) - Constructor for class edu.isi.pegasus.planner.invocation.WorkingDir
-
Constructs a piece of data.
- wrapJobWithLocalPegasusLite(Job) - Method in class edu.isi.pegasus.planner.code.generator.condor.style.Condor
-
Wraps the local universe jobs with a local Pegasus Lite wrapper to get around the Condor file IO bug for local universe job
- wrapJobWithPegasusLite(Job, boolean) - Method in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
Generates a seqexec input file for the job.
- write(Partition) - Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
Writes out a partition to the associate XML stream.
- write(Writer, Map<String, Collection<ReplicaCatalogEntry>>) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.Regex
- write(String) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
- write(String) - Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
Writes out to the file.
- write(Buffer) - Method in class edu.isi.pegasus.gridftp.GridFTPConnection.StringBuilderDataSink
- writeAlias(Writer, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.ReplicaCatalog
-
Renders alias as xml
- writeAttribute(Writer, String, String) - Method in class edu.isi.pegasus.common.util.XMLOutput
-
XML write helper method writes a quoted attribute onto a stream.
- writeAttribute(Writer, String, String) - Method in class edu.isi.pegasus.planner.catalog.classes.Profiles
-
Writes an attribute to the stream.
- writeAttribute(Writer, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractSiteData
-
Writes an attribute to the stream.
- writeAttribute(Writer, String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
Writes an attribute to the stream.
- writeAttribute(Writer, String, String) - Method in class edu.isi.pegasus.planner.partitioner.Partition
-
Writes an attribute to the stream.
- writeAttribute(String, String) - Method in class edu.isi.pegasus.common.util.XMLWriter
- writeAttribute(String, String) - Method in class edu.isi.pegasus.planner.catalog.site.classes.AbstractXMLPrintVisitor
-
Writes an attribute to the stream.
- writeAttribute2(Writer, String, String) - Method in class edu.isi.pegasus.common.util.XMLOutput
-
Saner XML write helper method writes a quoted attribute onto a stream.
- writeAttributes() - Method in class edu.isi.pegasus.common.util.XMLWriter
-
Writes out the attributes of a given element to the writer
- writeCData(String) - Method in class edu.isi.pegasus.common.util.XMLWriter
- writeDagFileTail(ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
It writes the relations making up the DAG in the dag file and and closes the file handle to it.
- writeData(String) - Method in class edu.isi.pegasus.common.util.XMLWriter
- writeDOTFile(String, ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Writes out the DOT file in the submit directory.
- writeDOTHeader(Writer, String) - Method in class edu.isi.pegasus.planner.classes.ADag
-
Writes out the static DOT Header.
- writeFileServer(Directory, XML3PrintVisitor.DirectoryTypes) - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
- writeFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
- writeHeader() - Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
Writes out the opening element of the xml document.
- writeHeadFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
- writeHeadFSScratch() - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
- writeHeadFSStorage() - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
- writeJobMapFile(String, ADag) - Method in class edu.isi.pegasus.planner.code.generator.condor.CondorGenerator
-
Writes out the job map file in the submit directory.
- writeLine() - Method in class edu.isi.pegasus.common.util.XMLWriter
- writeln(String) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
Writes out to the file.
- writeln(String) - Method in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
Writes out to the file.
- writeOutBraindump(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Writes out the metrics file for the workflow
- writeOutBraindump(File, Partition, String, String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Writes out the braindump.txt file for a partition in the partition submit directory.
- writeOutBraindumpFile(Map<String, String>) - Method in class edu.isi.pegasus.planner.code.generator.Braindump
-
Writes out the braindump.txt file for a workflow in the submit directory.
- writeOutDAXReplicaStore(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Writes out the DAX replica store
- writeOutInputFileForJobAggregator(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.Abstract
-
Writes out the input file for the aggregated job
- writeOutInputFileForJobAggregator(AggregatedJob) - Method in class edu.isi.pegasus.planner.cluster.aggregator.MPIExec
-
Writes out the input file for the aggregated job
- writeOutMappings(Writer, ADag) - Method in class edu.isi.pegasus.planner.code.generator.NetloggerJobMapper
-
Writes out the job mappings for a workflow.
- writeOutMetrics() - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Returns a boolean indicating whether to write out the planner metrics or not.
- writeOutMetricsFile(PlannerMetrics) - Method in class edu.isi.pegasus.planner.code.generator.Metrics
-
Writes out the workflow metrics file in the submit directory
- writeOutNotifications(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Writes out the generator input file for the work-flow.
- writeOutProperties(String) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Writes out the properties to a temporary file in the directory passed.
- writeOutProperties(String) - Method in class edu.isi.pegasus.planner.parser.pdax.PDAX2MDAG
-
Writes out the properties to a temporary file in the directory passed.
- writeOutProperties(String, boolean) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Writes out the properties to a temporary file in the directory passed.
- writeOutProperties(String, boolean, boolean) - Method in class edu.isi.pegasus.planner.common.PegasusProperties
-
Writes out the properties to a temporary file in the directory passed.
- writeOutRankings(File, Collection<Ranking>) - Method in class edu.isi.pegasus.planner.client.RankDAX
-
Writes out the ranking to the file.
- writeOutStampedeEvents(ADag) - Method in class edu.isi.pegasus.planner.code.generator.Abstract
-
Writes out the stampedeEventGenerator events for the workflow.
- writePartitionDax(Partition) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It writes out a dax consisting of the jobs as specified in the partition.
- writePartitionDax(Partition, int) - Method in class edu.isi.pegasus.planner.partitioner.DAXWriter
-
It writes out a dax consisting of the jobs as specified in the partition.
- writePartitionDax(Partition, int) - Method in class edu.isi.pegasus.planner.partitioner.MultipleLook
-
It writes out a dax consisting of the jobs as specified in the partition.
- writePartitionDax(Partition, int) - Method in class edu.isi.pegasus.planner.partitioner.SingleLook
-
It writes out a dax consisting of the jobs as specified in the partition.
- WriterCallback - Class in edu.isi.pegasus.planner.partitioner
-
This callback writes out a
DAX
file for each of the partitions, and also writes out aPDAX
file that captures the relations between the partitions. - WriterCallback() - Constructor for class edu.isi.pegasus.planner.partitioner.WriterCallback
-
The default constructor.
- writeReplicaCatalogEntry(String, ReplicaCatalogEntry) - Method in class edu.isi.pegasus.planner.catalog.replica.impl.FlushedCache
-
The method generate a String representation of the replica catalog entry.
- writeStdInAndAssociateCredentials(TransferJob, FileWriter, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.AbstractMultipleFTPerXFERJob
-
Writes to a FileWriter stream the stdin which goes into the magic script via standard input
- writeStdInAndAssociateCredentials(TransferJob, FileWriter, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.GUC
-
Writes to a FileWriter stream the stdin which goes into the magic script via standard input
- writeStdInAndAssociateCredentials(TransferJob, FileWriter, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.T2
-
Writes to a FileWriter stream the stdin which T2 takes via standard input.
- writeStdInAndAssociateCredentials(TransferJob, FileWriter, Collection, String, int) - Method in class edu.isi.pegasus.planner.transfer.implementation.Transfer
-
Writes to a FileWriter stream the stdin which goes into the magic script via standard input
- writeString(String) - Method in class edu.isi.pegasus.planner.code.generator.Shell
-
Writes a string to the associated write handle with the class
- writeTC() - Method in class edu.isi.pegasus.planner.catalog.transformation.impl.File
- writeTestLog(LogFormatter) - Method in class edu.isi.pegasus.common.logging.TestLogFormatter
- writeToFile(String) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Generate a DAX File out of this object;
- writeToSTDOUT() - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Generate a DAX representation on STDOUT.
- writeToWriter(Writer, boolean) - Method in class edu.isi.pegasus.planner.dax.ADAG
-
Generate a DAX representation and pipe it into the Writer
- writeUnEscapedData(String) - Method in class edu.isi.pegasus.common.util.XMLWriter
- writeWorkerFS() - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
- writeWorkerFSScratch() - Method in class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
- writeXMLComment(String) - Method in class edu.isi.pegasus.common.util.XMLWriter
- writeXMLComment(String, boolean) - Method in class edu.isi.pegasus.common.util.XMLWriter
- writeXMLHeader() - Method in class edu.isi.pegasus.common.util.XMLWriter
- writeXMLHeader(Writer, String, String) - Method in class edu.isi.pegasus.planner.invocation.InvocationRecord
-
Writes the header of the XML output.
X
- x(String, int) - Static method in class edu.isi.pegasus.common.util.Separator2Test
- x509 - edu.isi.pegasus.common.credential.CredentialHandler.TYPE
- X509_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.common.credential.CredentialHandlerFactory
-
The name of the class implementing the x509 credentials
- X509_USER_PROXY_KEY - Static variable in class edu.isi.pegasus.common.credential.impl.Proxy
-
The name of the environment variable that specifies the path to the proxy.
- X509_USER_PROXY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.ENV
-
The name of the environment variable that specifies the path to the proxy.
- X509_USER_PROXY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Pegasus
- X509_USER_PROXY_PEGASUS_PROFILE_KEY - Static variable in class edu.isi.pegasus.common.credential.impl.Proxy
- X509USERPROXY_KEY - Static variable in class edu.isi.pegasus.planner.namespace.Condor
-
The key that overrides the default x509 proxy location.
- x86 - edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- x86 - edu.isi.pegasus.planner.dax.Executable.ARCH
- X86 - edu.isi.pegasus.planner.dax.Executable.ARCH
- x86_64 - edu.isi.pegasus.planner.catalog.classes.SysInfo.Architecture
- x86_64 - edu.isi.pegasus.planner.dax.Executable.ARCH
- X86_64 - edu.isi.pegasus.planner.dax.Executable.ARCH
- XBIT_DERIVATION_NS - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The derivation namespace for the setXBit jobs.
- XBIT_DERIVATION_NS - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The derivation namespace for the setXBit jobs.
- XBIT_DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The version number for the derivations for setXBit jobs.
- XBIT_DERIVATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The version number for the derivations for setXBit jobs.
- XBIT_EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The basename of the pegasus dirmanager executable.
- XBIT_EXECUTABLE_BASENAME - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The basename of the pegasus dirmanager executable.
- XBIT_TRANSFORMATION - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The logical name of the transformation that creates directories on the remote execution pools.
- XBIT_TRANSFORMATION_NS - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The transformation namespace for the setXBit jobs.
- XBIT_TRANSFORMATION_NS - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The transformation namespace for the setXBit jobs.
- XBIT_TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.code.gridstart.PegasusLite
-
The version number for the derivations for setXBit jobs.
- XBIT_TRANSFORMATION_VERSION - Static variable in class edu.isi.pegasus.planner.transfer.implementation.Abstract
-
The version number for the derivations for setXBit jobs.
- XFORMATION_AD_KEY - Static variable in class edu.isi.pegasus.planner.code.generator.condor.ClassADSGenerator
-
The classad for the complete transformation name.
- XML - Class in edu.isi.pegasus.planner.catalog.site.impl.old
-
It gets the information about a pool by reading the pool config xml that is generated from querying mds or using the static information provided by the user at the submit host.
- XML - Class in edu.isi.pegasus.planner.catalog.site.impl
-
An implementation of the Site Catalog interface that is backed up by an XML file conforming to site catalog xml schema version 3.
- XML() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.XML
-
The default constructor.
- XML(String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.XML
-
The private constructor that is called only once, when the Singleton is invoked for the first time.
- XML(String, String) - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.old.XML
-
The private constructor that is called to return a non singleton instance of the class.
- XML_HEADER - Static variable in class edu.isi.pegasus.common.util.XMLWriter
- XML_IMPLEMENTING_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.SiteFactory
-
The name of the class that connects to an XML based Site Catalog.
- XML_IMPLEMENTING_CLASS_BASENAME - Static variable in class edu.isi.pegasus.planner.catalog.site.SiteFactory
-
For 4.2, the orginal XML3 class was renamed XML and it supports different schemas.
- XML_NAMESPACE - Static variable in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
- XML_NAMESPACE - Static variable in class edu.isi.pegasus.planner.client.SCClient
- XML_NAMESPACE - Static variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
- XML_READ_CLASS - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
- XML_READ_VALUE - Static variable in class edu.isi.pegasus.planner.catalog.site.impl.old.PoolMode
-
Constants for xml pool read.
- XML_VERSION - Static variable in class edu.isi.pegasus.planner.catalog.transformation.client.TCQuery
- XML_VERSION - Static variable in class edu.isi.pegasus.planner.client.SCClient
- XML_VERSION - Static variable in class edu.isi.pegasus.planner.partitioner.PDAXWriter
-
The version of the associated xml schema, to which the pdax files being written conform to.
- XML2 - Class in edu.isi.pegasus.planner.catalog.site.impl
-
A back port to old site catalog schema for the current Site Catalog API This class parses XML documents that conform to site catalog schema version 2.
- XML2() - Constructor for class edu.isi.pegasus.planner.catalog.site.impl.XML2
-
The default constructor.
- XML3PrintVisitor - Class in edu.isi.pegasus.planner.catalog.site.classes
-
Prints the Site Catalog compatible with Site Catalog schema version 3 https://pegasus.isi.edu/wms/docs/schemas/sc-4.0/sc-3.0.html
- XML3PrintVisitor() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.XML3PrintVisitor
- XML3PrintVisitor.DirectoryTypes - Enum in edu.isi.pegasus.planner.catalog.site.classes
- XML4PrintVisitor - Class in edu.isi.pegasus.planner.catalog.site.classes
-
Prints the Site Catalog compatible with Site Catalog schema version 4 https://pegasus.isi.edu/wms/docs/schemas/sc-4.0/sc-4.0.html
- XML4PrintVisitor() - Constructor for class edu.isi.pegasus.planner.catalog.site.classes.XML4PrintVisitor
- XMLErrorHandler - Class in edu.isi.pegasus.planner.parser
-
This class handles the errors which occur while enforcing validation against the XML Schema.
- XMLErrorHandler() - Constructor for class edu.isi.pegasus.planner.parser.XMLErrorHandler
-
The default constructor.
- XMLOutput - Class in edu.isi.pegasus.common.util
-
This abstract class defines a common base for certain classes that deal with the generation of XML files.
- XMLOutput() - Constructor for class edu.isi.pegasus.common.util.XMLOutput
- XMLProducer - Interface in edu.isi.pegasus.planner.provenance.pasoa
-
A PASOA specific interface to generate various assertions as XML.
- XMLProducerFactory - Class in edu.isi.pegasus.planner.provenance.pasoa.producer
-
The factory for instantiating an XMLProducer.
- XMLProducerFactory() - Constructor for class edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactory
- XMLProducerFactoryException - Exception in edu.isi.pegasus.planner.provenance.pasoa.producer
-
Class to notify of failures while instantiating XMLProducer implementations.
- XMLProducerFactoryException(String) - Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
-
Constructs a
XMLProducerFactoryException
with no detail message. - XMLProducerFactoryException(String, String) - Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
-
Constructs a
XMLProducerFactoryException
with the specified detailed message. - XMLProducerFactoryException(String, String, Throwable) - Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
-
Constructs a
XMLProducerFactoryException
with the specified detailed message and a cause. - XMLProducerFactoryException(String, Throwable) - Constructor for exception edu.isi.pegasus.planner.provenance.pasoa.producer.XMLProducerFactoryException
-
Constructs a
XMLProducerFactoryException
with the specified detailed message and a cause. - XMLWriter - Class in edu.isi.pegasus.common.util
- XMLWriter(Writer) - Constructor for class edu.isi.pegasus.common.util.XMLWriter
- XMLWriter(Writer, String) - Constructor for class edu.isi.pegasus.common.util.XMLWriter
_
- _ADD_BLOAT - Static variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
-
The variable that triggers generation of message id and the event id in the messages.
- _AIX - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- _AMD64 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- _entityIdMap - Variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
- _eventId - Variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
- _eventName - Variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
- _INTEL32 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- _INTEL64 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- _LINUX - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- _progName - Variable in class edu.isi.ikcap.workflows.util.logging.LogEvent
- _SPARCV7 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- _SPARCV9 - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- _SUNOS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- _table_ - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- _table_ - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- _value_ - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Arch
- _value_ - Variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
- _WINDOWS - Static variable in class edu.isi.pegasus.planner.catalog.transformation.classes.Os
All Classes All Packages