Class DecisionMaker
- java.lang.Object
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- edu.msu.cme.rdp.classifier.train.validation.DecisionMaker
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public class DecisionMaker extends java.lang.Object
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Field Summary
Fields Modifier and Type Field Description static int
NUM_OF_RUNS
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Constructor Summary
Constructors Constructor Description DecisionMaker(TreeFactory factory)
Creates new DecisionMaker
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.List<ValidationClassificationResult>
getBestClasspath(edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator iterator, java.util.HashMap<java.lang.String,HierarchyTree> nodeMap, boolean useSeed, int min_bootstrap_words)
For each sequence, find the best class among the list of genera using all the overlapping words.
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Field Detail
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NUM_OF_RUNS
public static final int NUM_OF_RUNS
- See Also:
- Constant Field Values
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Constructor Detail
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DecisionMaker
public DecisionMaker(TreeFactory factory)
Creates new DecisionMaker
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Method Detail
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getBestClasspath
public java.util.List<ValidationClassificationResult> getBestClasspath(edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator iterator, java.util.HashMap<java.lang.String,HierarchyTree> nodeMap, boolean useSeed, int min_bootstrap_words) throws java.io.IOException
For each sequence, find the best class among the list of genera using all the overlapping words. Then select a subset of words to get the assignment, repeats 100 times, count the number of votes- Throws:
java.io.IOException
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