Package edu.msu.cme.rdp.multicompare
Class MCSample
- java.lang.Object
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- edu.msu.cme.rdp.multicompare.MCSample
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- Direct Known Subclasses:
MCSampleResult
public class MCSample extends java.lang.Object
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Constructor Summary
Constructors Constructor Description MCSample(edu.msu.cme.rdp.readseq.readers.SeqReader reader, java.lang.String name)
MCSample(java.io.File f)
MCSample(java.io.File sampleFile, java.io.File dupCountFile)
MCSample(java.io.File in, java.lang.String sampleName)
MCSample(java.lang.String sampleName)
MCSample(java.lang.String sampleName, java.io.File dupCountFile)
MCSample(java.util.List<ClassifierSequence> sampleSeqs, java.lang.String sampleName)
MCSample(java.util.List<ClassifierSequence> sampleSeqs, java.lang.String sampleName, java.io.File dupCountFile)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addRankCount(ClassificationResult result)
java.util.Map<java.lang.String,int[]>
getBootstrapCountTable()
static int
getBootstrapIndex(double d)
int
getDupCount(java.lang.String seqName)
ClassifierSequence
getNextSeq()
java.lang.String
getSampleName()
java.lang.String
toString()
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Constructor Detail
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MCSample
public MCSample(edu.msu.cme.rdp.readseq.readers.SeqReader reader, java.lang.String name)
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MCSample
public MCSample(java.io.File f) throws java.io.IOException
- Throws:
java.io.IOException
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MCSample
public MCSample(java.lang.String sampleName)
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MCSample
public MCSample(java.lang.String sampleName, java.io.File dupCountFile) throws java.io.IOException
- Throws:
java.io.IOException
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MCSample
public MCSample(java.util.List<ClassifierSequence> sampleSeqs, java.lang.String sampleName)
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MCSample
public MCSample(java.util.List<ClassifierSequence> sampleSeqs, java.lang.String sampleName, java.io.File dupCountFile) throws java.io.IOException
- Throws:
java.io.IOException
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MCSample
public MCSample(java.io.File in, java.lang.String sampleName) throws java.io.IOException
- Throws:
java.io.IOException
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MCSample
public MCSample(java.io.File sampleFile, java.io.File dupCountFile) throws java.io.IOException
- Throws:
java.io.IOException
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Method Detail
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getSampleName
public java.lang.String getSampleName()
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getNextSeq
public ClassifierSequence getNextSeq() throws java.io.IOException
- Throws:
java.io.IOException
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getDupCount
public int getDupCount(java.lang.String seqName)
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addRankCount
public void addRankCount(ClassificationResult result)
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getBootstrapIndex
public static int getBootstrapIndex(double d)
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getBootstrapCountTable
public java.util.Map<java.lang.String,int[]> getBootstrapCountTable()
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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