Class ClassificationResult


  • public class ClassificationResult
    extends java.lang.Object
    This class holds the classification results for a query sequence.
    • Constructor Detail

      • ClassificationResult

        public ClassificationResult​(edu.msu.cme.rdp.readseq.readers.Sequence p,
                                    boolean reverse,
                                    java.util.List<RankAssignment> a,
                                    HierarchyVersion version)
        Creates a new instance of ClassificationResult. This class holds the classification results for a query sequence.
    • Method Detail

      • getSequence

        public edu.msu.cme.rdp.readseq.readers.Sequence getSequence()
        Returns the query sequence
      • getAssignments

        public java.util.List<RankAssignment> getAssignments()
        Returns a list of RankAssignments. The assignments are returned in the order of taxonomic ranks, from the highest to the lowest.
      • getTrainsetNo

        public int getTrainsetNo()
        Returns the training set number of the taxonomy hierarchy from of the training file.
      • getHierarchyTrainsetNo

        public HierarchyVersion getHierarchyTrainsetNo()
        Returns the version of the taxonomy hierarchy from of the training file.
      • isReverse

        public boolean isReverse()