Class PairwiseSeqDistance
- java.lang.Object
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- edu.msu.cme.rdp.classifier.train.validation.distance.PairwiseSeqDistance
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public class PairwiseSeqDistance extends java.lang.Object
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Constructor Summary
Constructors Constructor Description PairwiseSeqDistance(java.lang.String trainseqFile, java.lang.String taxFile, edu.msu.cme.rdp.alignment.AlignmentMode mode, boolean show_alignment)
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description static void
main(java.lang.String[] args)
This program does the pairwise alignment between each pair of sequences, reports a summary of the average distances and the stdev at each rank.void
printSummary(java.io.PrintStream outStream)
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Constructor Detail
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PairwiseSeqDistance
public PairwiseSeqDistance(java.lang.String trainseqFile, java.lang.String taxFile, edu.msu.cme.rdp.alignment.AlignmentMode mode, boolean show_alignment) throws java.io.IOException, edu.msu.cme.rdp.alignment.pairwise.rna.OverlapCheckFailedException
- Throws:
java.io.IOException
edu.msu.cme.rdp.alignment.pairwise.rna.OverlapCheckFailedException
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Method Detail
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printSummary
public void printSummary(java.io.PrintStream outStream)
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main
public static void main(java.lang.String[] args) throws java.lang.Exception
This program does the pairwise alignment between each pair of sequences, reports a summary of the average distances and the stdev at each rank.- Parameters:
args
-- Throws:
java.lang.Exception
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