Class ComparisonCmd
- java.lang.Object
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- edu.msu.cme.rdp.classifier.comparison.ComparisonCmd
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public class ComparisonCmd extends java.lang.Object
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
COMPARE_OUTFILE_DESC
static java.lang.String
COMPARE_OUTFILE_LONG_OPT
static java.lang.String
COMPARE_OUTFILE_SHORT_OPT
static java.lang.String
QUERYFILE_DESC
static java.lang.String
QUERYFILE1_LONG_OPT
static java.lang.String
QUERYFILE1_SHORT_OPT
static java.lang.String
QUERYFILE2_LONG_OPT
static java.lang.String
QUERYFILE2_SHORT_OPT
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Constructor Summary
Constructors Constructor Description ComparisonCmd(java.lang.String propfile, java.lang.String gene)
Creates a new Manager
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description void
doClassify(java.lang.String s1, java.lang.String s2, java.lang.String detailFile, java.lang.String sigFile, ClassificationResultFormatter.FORMAT format)
given the parser and root, calls the tester to do the classificationstatic void
main(java.lang.String[] args)
static void
printLicense()
Prints the license information to std err.
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Field Detail
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QUERYFILE1_LONG_OPT
public static final java.lang.String QUERYFILE1_LONG_OPT
- See Also:
- Constant Field Values
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QUERYFILE2_LONG_OPT
public static final java.lang.String QUERYFILE2_LONG_OPT
- See Also:
- Constant Field Values
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COMPARE_OUTFILE_LONG_OPT
public static final java.lang.String COMPARE_OUTFILE_LONG_OPT
- See Also:
- Constant Field Values
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QUERYFILE1_SHORT_OPT
public static final java.lang.String QUERYFILE1_SHORT_OPT
- See Also:
- Constant Field Values
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QUERYFILE2_SHORT_OPT
public static final java.lang.String QUERYFILE2_SHORT_OPT
- See Also:
- Constant Field Values
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COMPARE_OUTFILE_SHORT_OPT
public static final java.lang.String COMPARE_OUTFILE_SHORT_OPT
- See Also:
- Constant Field Values
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QUERYFILE_DESC
public static final java.lang.String QUERYFILE_DESC
- See Also:
- Constant Field Values
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COMPARE_OUTFILE_DESC
public static final java.lang.String COMPARE_OUTFILE_DESC
- See Also:
- Constant Field Values
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Constructor Detail
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ComparisonCmd
public ComparisonCmd(java.lang.String propfile, java.lang.String gene) throws java.io.IOException, TrainingDataException
Creates a new Manager- Throws:
java.io.IOException
TrainingDataException
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Method Detail
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doClassify
public void doClassify(java.lang.String s1, java.lang.String s2, java.lang.String detailFile, java.lang.String sigFile, ClassificationResultFormatter.FORMAT format) throws java.io.IOException
given the parser and root, calls the tester to do the classification- Throws:
java.io.IOException
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printLicense
public static void printLicense()
Prints the license information to std err.
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main
public static void main(java.lang.String[] args) throws java.lang.Exception
- Throws:
java.lang.Exception
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