Package edu.msu.cme.rdp.multicompare
Class Reprocess
- java.lang.Object
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- edu.msu.cme.rdp.multicompare.Reprocess
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public class Reprocess extends java.lang.Object
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Constructor Summary
Constructors Constructor Description Reprocess()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static void
main(java.lang.String[] args)
This class reprocesses the classification results (allrank output) and print out hierarchy output file, based on the confidence cutoff; and print out only the detail classification results with assignment at certain rank with confidence above the cutoff or/and matching a given taxon.static java.util.HashSet<java.lang.String>
readTaxonFilterFile(java.lang.String file)
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Method Detail
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readTaxonFilterFile
public static java.util.HashSet<java.lang.String> readTaxonFilterFile(java.lang.String file) throws java.io.IOException
- Throws:
java.io.IOException
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main
public static void main(java.lang.String[] args) throws java.lang.Exception
This class reprocesses the classification results (allrank output) and print out hierarchy output file, based on the confidence cutoff; and print out only the detail classification results with assignment at certain rank with confidence above the cutoff or/and matching a given taxon.- Parameters:
args
-- Throws:
java.lang.Exception
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