Class DecisionMaker


  • public class DecisionMaker
    extends java.lang.Object
    • Field Summary

      Fields 
      Modifier and Type Field Description
      static int NUM_OF_RUNS  
    • Constructor Summary

      Constructors 
      Constructor Description
      DecisionMaker​(TreeFactory factory)
      Creates new DecisionMaker
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.util.List<ValidationClassificationResult> getBestClasspath​(edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator iterator, java.util.HashMap<java.lang.String,​HierarchyTree> nodeMap, boolean useSeed, int min_bootstrap_words)
      For each sequence, find the best class among the list of genera using all the overlapping words.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • DecisionMaker

        public DecisionMaker​(TreeFactory factory)
        Creates new DecisionMaker
    • Method Detail

      • getBestClasspath

        public java.util.List<ValidationClassificationResult> getBestClasspath​(edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator iterator,
                                                                               java.util.HashMap<java.lang.String,​HierarchyTree> nodeMap,
                                                                               boolean useSeed,
                                                                               int min_bootstrap_words)
                                                                        throws java.io.IOException
        For each sequence, find the best class among the list of genera using all the overlapping words. Then select a subset of words to get the assignment, repeats 100 times, count the number of votes
        Throws:
        java.io.IOException