Class FindWindowFrame


  • public class FindWindowFrame
    extends java.lang.Object
    • Field Summary

      Fields 
      Modifier and Type Field Description
      static int step  
      static int window_size  
    • Constructor Summary

      Constructors 
      Constructor Description
      FindWindowFrame()  
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.util.ArrayList find​(java.lang.String seqString)
      Given the aligned E.coli seqstring, find the corresponding model position for each window.
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • FindWindowFrame

        public FindWindowFrame()
    • Method Detail

      • find

        public java.util.ArrayList find​(java.lang.String seqString)
                                 throws java.io.IOException
        Given the aligned E.coli seqstring, find the corresponding model position for each window. The model position and the ecoli position starts with 1
        Throws:
        java.io.IOException