All Classes

  • AbstractNode
  • BoxPlotUtils
  • ClassificationParser
  • ClassificationResult
  • ClassificationResultFormatter
  • ClassificationResultFormatter.FORMAT
  • Classifier
  • ClassifierCmd
  • ClassifierFactory
  • ClassifierGridware
  • ClassifierMain
  • ClassifierSequence
  • ClassifierTraineeMaker
  • ClassifierTreeBuilder
  • ClassifierTreeBuilder.ClassifierTaxonFactory
  • CmdOptions
  • CompareMisclassified
  • CompareTrainingSets
  • ComparisonBrowserBean
  • ComparisonBrowserNode
  • ComparisonCmd
  • ComparisonResultTreeSet
  • ComparisonResultTreeSet.ComparisonResultComparator
  • CopyNumberParser
  • CorrectAssignment
  • CrossValidate
  • CrossValidateMain
  • DecisionMaker
  • DefaultPrintVisitor
  • EstimateSPrintVisitor
  • FindWindowFrame
  • GenusWordConditionalProb
  • GenusWordProbFileParser
  • HierarchyTree
  • HierarchyTree
  • HierarchyVersion
  • LeaveOneOutTester
  • LeaveOneOutTesterMain
  • LineageSequence
  • LineageSequenceParser
  • LogWordPriorFileParser
  • Main
  • MainMovingWindow
  • MCSample
  • MCSamplePrintUtil
  • MCSampleResult
  • MCTaxon
  • MergeTaxonCount
  • MultiClassifier
  • MultiClassifierResult
  • NameRankDupException
  • NBClassifier
  • PairwiseSeqDistance
  • PixelCalculatorBean
  • ProbIndexFileParser
  • RankAssignment
  • RawGenusWordConditionalProb
  • RawHierarchyTree
  • RdmSelectTaxon
  • Reprocess
  • Score
  • SeqErrorBean
  • SeqInfo
  • ShortSequenceException
  • SigCalculator
  • SortedROCSet
  • SortedROCSet.PredictionCount
  • SortedROCSet.ResultComparator
  • StatusCount
  • StatusCountUtils
  • TaxaSimilarityMain
  • Taxon
  • Taxonomy
  • Taxonomy
  • TaxonTree
  • TrainingDataException
  • TrainingInfo
  • TreeFactory
  • TreeFactory
  • TreeFileParser
  • UncNode
  • Unifrac
  • UnifracTaxon
  • UnifracTree
  • UnifracTree.UnifracResult
  • UnifracTreeBuilder
  • UnifracTreeBuilder.UnifracSample
  • ValidationClassificationResult
  • ValidClassificationResultFacade
  • Window
  • WindowTester
  • Ztable