Package edu.msu.cme.rdp.classifier.cli
Class CmdOptions
- java.lang.Object
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- edu.msu.cme.rdp.classifier.cli.CmdOptions
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public class CmdOptions extends java.lang.Object
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Field Summary
Fields Modifier and Type Field Description static java.lang.String
BIOMFILE_DESC
static java.lang.String
BIOMFILE_LONG_OPT
static java.lang.String
BIOMFILE_SHORT_OPT
static java.lang.String
BOOTSTRAP_DESC
static java.lang.String
BOOTSTRAP_LONG_OPT
static java.lang.String
BOOTSTRAP_OUTFILE_DESC
static java.lang.String
BOOTSTRAP_OUTFILE_LONG_OPT
static java.lang.String
BOOTSTRAP_OUTFILE_SHORT_OPT
static java.lang.String
BOOTSTRAP_SHORT_OPT
static float
DEFAULT_CONF
static ClassificationResultFormatter.FORMAT
DEFAULT_FORMAT
static java.lang.String
DEFAULT_GENE
static java.lang.String
FORMAT_DESC
static java.lang.String
FORMAT_LONG_OPT
static java.lang.String
FORMAT_SHORT_OPT
static java.lang.String
GENE_DESC
static java.lang.String
GENE_LONG_OPT
static java.lang.String
GENE_SHORT_OPT
static java.lang.String
HIER_OUTFILE_DESC
static java.lang.String
HIER_OUTFILE_LONG_OPT
static java.lang.String
HIER_OUTFILE_SHORT_OPT
static java.lang.String
METADATA_DESC
static java.lang.String
METADATA_LONG_OPT
static java.lang.String
METADATA_SHORT_OPT
static java.lang.String
MIN_BOOTSTRAP_WORDS_LONG_OPT
static java.lang.String
MIN_BOOTSTRAP_WORDS_SHORT_OPT
static java.lang.String
MIN_WORDS_DESC
static java.lang.String
OUTFILE_DESC
static java.lang.String
OUTFILE_LONG_OPT
static java.lang.String
OUTFILE_SHORT_OPT
static java.lang.String
QUERYFILE_DESC
static java.lang.String
QUERYFILE_LONG_OPT
static java.lang.String
QUERYFILE_SHORT_OPT
static java.lang.String
RANK_LONG_OPT
static java.lang.String
RANK_SHORT_OPT
static java.lang.String
SAMPLE_LONG_OPT
static java.lang.String
SHORTSEQ_OUTFILE_DESC
static java.lang.String
SHORTSEQ_OUTFILE_LONG_OPT
static java.lang.String
SHORTSEQ_OUTFILE_SHORT_OPT
static java.lang.String
TAXON_LONG_OPT
static java.lang.String
TAXON_SHORT_OPT
static java.lang.String
TRAINPROPFILE_DESC
static java.lang.String
TRAINPROPFILE_LONG_OPT
static java.lang.String
TRAINPROPFILE_SHORT_OPT
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Constructor Summary
Constructors Constructor Description CmdOptions()
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Field Detail
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DEFAULT_FORMAT
public static ClassificationResultFormatter.FORMAT DEFAULT_FORMAT
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DEFAULT_CONF
public static float DEFAULT_CONF
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DEFAULT_GENE
public static java.lang.String DEFAULT_GENE
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QUERYFILE_LONG_OPT
public static final java.lang.String QUERYFILE_LONG_OPT
- See Also:
- Constant Field Values
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OUTFILE_LONG_OPT
public static final java.lang.String OUTFILE_LONG_OPT
- See Also:
- Constant Field Values
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TRAINPROPFILE_LONG_OPT
public static final java.lang.String TRAINPROPFILE_LONG_OPT
- See Also:
- Constant Field Values
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FORMAT_LONG_OPT
public static final java.lang.String FORMAT_LONG_OPT
- See Also:
- Constant Field Values
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GENE_LONG_OPT
public static final java.lang.String GENE_LONG_OPT
- See Also:
- Constant Field Values
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MIN_BOOTSTRAP_WORDS_LONG_OPT
public static final java.lang.String MIN_BOOTSTRAP_WORDS_LONG_OPT
- See Also:
- Constant Field Values
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HIER_OUTFILE_LONG_OPT
public static final java.lang.String HIER_OUTFILE_LONG_OPT
- See Also:
- Constant Field Values
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BOOTSTRAP_LONG_OPT
public static final java.lang.String BOOTSTRAP_LONG_OPT
- See Also:
- Constant Field Values
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RANK_LONG_OPT
public static final java.lang.String RANK_LONG_OPT
- See Also:
- Constant Field Values
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TAXON_LONG_OPT
public static final java.lang.String TAXON_LONG_OPT
- See Also:
- Constant Field Values
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BOOTSTRAP_OUTFILE_LONG_OPT
public static final java.lang.String BOOTSTRAP_OUTFILE_LONG_OPT
- See Also:
- Constant Field Values
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SHORTSEQ_OUTFILE_LONG_OPT
public static final java.lang.String SHORTSEQ_OUTFILE_LONG_OPT
- See Also:
- Constant Field Values
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BIOMFILE_LONG_OPT
public static final java.lang.String BIOMFILE_LONG_OPT
- See Also:
- Constant Field Values
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SAMPLE_LONG_OPT
public static final java.lang.String SAMPLE_LONG_OPT
- See Also:
- Constant Field Values
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METADATA_LONG_OPT
public static final java.lang.String METADATA_LONG_OPT
- See Also:
- Constant Field Values
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QUERYFILE_SHORT_OPT
public static final java.lang.String QUERYFILE_SHORT_OPT
- See Also:
- Constant Field Values
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OUTFILE_SHORT_OPT
public static final java.lang.String OUTFILE_SHORT_OPT
- See Also:
- Constant Field Values
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TRAINPROPFILE_SHORT_OPT
public static final java.lang.String TRAINPROPFILE_SHORT_OPT
- See Also:
- Constant Field Values
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FORMAT_SHORT_OPT
public static final java.lang.String FORMAT_SHORT_OPT
- See Also:
- Constant Field Values
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GENE_SHORT_OPT
public static final java.lang.String GENE_SHORT_OPT
- See Also:
- Constant Field Values
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MIN_BOOTSTRAP_WORDS_SHORT_OPT
public static final java.lang.String MIN_BOOTSTRAP_WORDS_SHORT_OPT
- See Also:
- Constant Field Values
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HIER_OUTFILE_SHORT_OPT
public static final java.lang.String HIER_OUTFILE_SHORT_OPT
- See Also:
- Constant Field Values
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BOOTSTRAP_SHORT_OPT
public static final java.lang.String BOOTSTRAP_SHORT_OPT
- See Also:
- Constant Field Values
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RANK_SHORT_OPT
public static final java.lang.String RANK_SHORT_OPT
- See Also:
- Constant Field Values
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TAXON_SHORT_OPT
public static final java.lang.String TAXON_SHORT_OPT
- See Also:
- Constant Field Values
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BOOTSTRAP_OUTFILE_SHORT_OPT
public static final java.lang.String BOOTSTRAP_OUTFILE_SHORT_OPT
- See Also:
- Constant Field Values
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SHORTSEQ_OUTFILE_SHORT_OPT
public static final java.lang.String SHORTSEQ_OUTFILE_SHORT_OPT
- See Also:
- Constant Field Values
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BIOMFILE_SHORT_OPT
public static final java.lang.String BIOMFILE_SHORT_OPT
- See Also:
- Constant Field Values
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METADATA_SHORT_OPT
public static final java.lang.String METADATA_SHORT_OPT
- See Also:
- Constant Field Values
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QUERYFILE_DESC
public static final java.lang.String QUERYFILE_DESC
- See Also:
- Constant Field Values
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OUTFILE_DESC
public static final java.lang.String OUTFILE_DESC
- See Also:
- Constant Field Values
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TRAINPROPFILE_DESC
public static final java.lang.String TRAINPROPFILE_DESC
- See Also:
- Constant Field Values
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FORMAT_DESC
public static final java.lang.String FORMAT_DESC
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GENE_DESC
public static final java.lang.String GENE_DESC
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MIN_WORDS_DESC
public static final java.lang.String MIN_WORDS_DESC
- See Also:
- Constant Field Values
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HIER_OUTFILE_DESC
public static final java.lang.String HIER_OUTFILE_DESC
- See Also:
- Constant Field Values
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BOOTSTRAP_DESC
public static final java.lang.String BOOTSTRAP_DESC
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BOOTSTRAP_OUTFILE_DESC
public static final java.lang.String BOOTSTRAP_OUTFILE_DESC
- See Also:
- Constant Field Values
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SHORTSEQ_OUTFILE_DESC
public static final java.lang.String SHORTSEQ_OUTFILE_DESC
- See Also:
- Constant Field Values
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BIOMFILE_DESC
public static final java.lang.String BIOMFILE_DESC
- See Also:
- Constant Field Values
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METADATA_DESC
public static final java.lang.String METADATA_DESC
- See Also:
- Constant Field Values
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