Package edu.msu.cme.rdp.classifier.train
Class LineageSequence
- java.lang.Object
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- edu.msu.cme.rdp.readseq.readers.Sequence
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- edu.msu.cme.rdp.classifier.train.LineageSequence
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- All Implemented Interfaces:
java.io.Serializable
public class LineageSequence extends edu.msu.cme.rdp.readseq.readers.Sequence
A ParsedRawSequence holds the data for a raw sequence.- See Also:
- Serialized Form
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Constructor Summary
Constructors Constructor Description LineageSequence(java.lang.String n, java.util.List<java.lang.String> al, java.lang.String seq)
Creates new ParsedRawSequence.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.List<java.lang.String>
getAncestors()
Returns the list of the ancestor taxa, with the highest ranked taxon first.java.lang.String
getDesc()
edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator
getPartialSeqIteratorbyGoodBases(int num_good_bases)
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Method Detail
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getAncestors
public java.util.List<java.lang.String> getAncestors()
Returns the list of the ancestor taxa, with the highest ranked taxon first.
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getDesc
public java.lang.String getDesc()
- Overrides:
getDesc
in classedu.msu.cme.rdp.readseq.readers.Sequence
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getPartialSeqIteratorbyGoodBases
public edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator getPartialSeqIteratorbyGoodBases(int num_good_bases) throws java.io.IOException
- Throws:
java.io.IOException
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