Class ComparisonCmd


  • public class ComparisonCmd
    extends java.lang.Object
    • Field Detail

      • QUERYFILE1_LONG_OPT

        public static final java.lang.String QUERYFILE1_LONG_OPT
        See Also:
        Constant Field Values
      • QUERYFILE2_LONG_OPT

        public static final java.lang.String QUERYFILE2_LONG_OPT
        See Also:
        Constant Field Values
      • COMPARE_OUTFILE_LONG_OPT

        public static final java.lang.String COMPARE_OUTFILE_LONG_OPT
        See Also:
        Constant Field Values
      • QUERYFILE1_SHORT_OPT

        public static final java.lang.String QUERYFILE1_SHORT_OPT
        See Also:
        Constant Field Values
      • QUERYFILE2_SHORT_OPT

        public static final java.lang.String QUERYFILE2_SHORT_OPT
        See Also:
        Constant Field Values
      • COMPARE_OUTFILE_SHORT_OPT

        public static final java.lang.String COMPARE_OUTFILE_SHORT_OPT
        See Also:
        Constant Field Values
      • COMPARE_OUTFILE_DESC

        public static final java.lang.String COMPARE_OUTFILE_DESC
        See Also:
        Constant Field Values
    • Constructor Detail

      • ComparisonCmd

        public ComparisonCmd​(java.lang.String propfile,
                             java.lang.String gene)
                      throws java.io.IOException,
                             TrainingDataException
        Creates a new Manager
        Throws:
        java.io.IOException
        TrainingDataException
    • Method Detail

      • doClassify

        public void doClassify​(java.lang.String s1,
                               java.lang.String s2,
                               java.lang.String detailFile,
                               java.lang.String sigFile,
                               ClassificationResultFormatter.FORMAT format)
                        throws java.io.IOException
        given the parser and root, calls the tester to do the classification
        Throws:
        java.io.IOException
      • printLicense

        public static void printLicense()
        Prints the license information to std err.
      • main

        public static void main​(java.lang.String[] args)
                         throws java.lang.Exception
        Throws:
        java.lang.Exception