Class MCSample

  • Direct Known Subclasses:
    MCSampleResult

    public class MCSample
    extends java.lang.Object
    • Constructor Detail

      • MCSample

        public MCSample​(edu.msu.cme.rdp.readseq.readers.SeqReader reader,
                        java.lang.String name)
      • MCSample

        public MCSample​(java.io.File f)
                 throws java.io.IOException
        Throws:
        java.io.IOException
      • MCSample

        public MCSample​(java.lang.String sampleName)
      • MCSample

        public MCSample​(java.lang.String sampleName,
                        java.io.File dupCountFile)
                 throws java.io.IOException
        Throws:
        java.io.IOException
      • MCSample

        public MCSample​(java.util.List<ClassifierSequence> sampleSeqs,
                        java.lang.String sampleName)
      • MCSample

        public MCSample​(java.util.List<ClassifierSequence> sampleSeqs,
                        java.lang.String sampleName,
                        java.io.File dupCountFile)
                 throws java.io.IOException
        Throws:
        java.io.IOException
      • MCSample

        public MCSample​(java.io.File in,
                        java.lang.String sampleName)
                 throws java.io.IOException
        Throws:
        java.io.IOException
      • MCSample

        public MCSample​(java.io.File sampleFile,
                        java.io.File dupCountFile)
                 throws java.io.IOException
        Throws:
        java.io.IOException
    • Method Detail

      • getSampleName

        public java.lang.String getSampleName()
      • getNextSeq

        public ClassifierSequence getNextSeq()
                                      throws java.io.IOException
        Throws:
        java.io.IOException
      • getDupCount

        public int getDupCount​(java.lang.String seqName)
      • getBootstrapIndex

        public static int getBootstrapIndex​(double d)
      • getBootstrapCountTable

        public java.util.Map<java.lang.String,​int[]> getBootstrapCountTable()
      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object