Class Reprocess


  • public class Reprocess
    extends java.lang.Object
    • Constructor Summary

      Constructors 
      Constructor Description
      Reprocess()  
    • Method Summary

      All Methods Static Methods Concrete Methods 
      Modifier and Type Method Description
      static void main​(java.lang.String[] args)
      This class reprocesses the classification results (allrank output) and print out hierarchy output file, based on the confidence cutoff; and print out only the detail classification results with assignment at certain rank with confidence above the cutoff or/and matching a given taxon.
      static java.util.HashSet<java.lang.String> readTaxonFilterFile​(java.lang.String file)  
      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • Reprocess

        public Reprocess()
    • Method Detail

      • readTaxonFilterFile

        public static java.util.HashSet<java.lang.String> readTaxonFilterFile​(java.lang.String file)
                                                                       throws java.io.IOException
        Throws:
        java.io.IOException
      • main

        public static void main​(java.lang.String[] args)
                         throws java.lang.Exception
        This class reprocesses the classification results (allrank output) and print out hierarchy output file, based on the confidence cutoff; and print out only the detail classification results with assignment at certain rank with confidence above the cutoff or/and matching a given taxon.
        Parameters:
        args -
        Throws:
        java.lang.Exception