Package edu.msu.cme.rdp.classifier
Class ClassificationResult
- java.lang.Object
-
- edu.msu.cme.rdp.classifier.ClassificationResult
-
public class ClassificationResult extends java.lang.Object
This class holds the classification results for a query sequence.
-
-
Constructor Summary
Constructors Constructor Description ClassificationResult(edu.msu.cme.rdp.readseq.readers.Sequence p, boolean reverse, java.util.List<RankAssignment> a, HierarchyVersion version)
Creates a new instance of ClassificationResult.
-
Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description java.util.List<RankAssignment>
getAssignments()
Returns a list of RankAssignments.HierarchyVersion
getHierarchyTrainsetNo()
Returns the version of the taxonomy hierarchy from of the training file.edu.msu.cme.rdp.readseq.readers.Sequence
getSequence()
Returns the query sequenceint
getTrainsetNo()
Returns the training set number of the taxonomy hierarchy from of the training file.boolean
isReverse()
-
-
-
Constructor Detail
-
ClassificationResult
public ClassificationResult(edu.msu.cme.rdp.readseq.readers.Sequence p, boolean reverse, java.util.List<RankAssignment> a, HierarchyVersion version)
Creates a new instance of ClassificationResult. This class holds the classification results for a query sequence.
-
-
Method Detail
-
getSequence
public edu.msu.cme.rdp.readseq.readers.Sequence getSequence()
Returns the query sequence
-
getAssignments
public java.util.List<RankAssignment> getAssignments()
Returns a list of RankAssignments. The assignments are returned in the order of taxonomic ranks, from the highest to the lowest.
-
getTrainsetNo
public int getTrainsetNo()
Returns the training set number of the taxonomy hierarchy from of the training file.
-
getHierarchyTrainsetNo
public HierarchyVersion getHierarchyTrainsetNo()
Returns the version of the taxonomy hierarchy from of the training file.
-
isReverse
public boolean isReverse()
-
-