Class ClassificationResultFormatter


  • public class ClassificationResultFormatter
    extends java.lang.Object
    • Field Detail

      • RANKS

        public static java.lang.String[] RANKS
      • RANKS_WITHSPECIES

        public static java.lang.String[] RANKS_WITHSPECIES
    • Constructor Detail

      • ClassificationResultFormatter

        public ClassificationResultFormatter()
    • Method Detail

      • getAllRankOutput

        public static java.lang.String getAllRankOutput​(ClassificationResult result)
      • getAllRankOutput

        public static java.lang.String getAllRankOutput​(ClassificationResult result,
                                                        double conf)
      • getFixRankOutput

        public static java.lang.String getFixRankOutput​(ClassificationResult result)
      • getFixRankOutput

        public static java.lang.String getFixRankOutput​(java.lang.String[] ranks,
                                                        ClassificationResult result)
      • getFilterByConfOutput

        public static java.lang.String getFilterByConfOutput​(ClassificationResult result,
                                                             float conf)
      • getFilterByConfOutput

        public static java.lang.String getFilterByConfOutput​(java.lang.String[] ranks,
                                                             ClassificationResult result,
                                                             float conf)
      • getBiomOutput

        public static java.lang.String getBiomOutput​(java.lang.String[] ranks,
                                                     ClassificationResult result,
                                                     float conf,
                                                     char delimiter)
        Output the classification result suitable to load into biom format. Concatenate the rank and the taxon name, remove quotes in the taxon name
      • getDBOutput

        public static java.lang.String getDBOutput​(ClassificationResult result,
                                                   float conf)