Class CmdOptions


  • public class CmdOptions
    extends java.lang.Object
    • Field Detail

      • DEFAULT_CONF

        public static float DEFAULT_CONF
      • DEFAULT_GENE

        public static java.lang.String DEFAULT_GENE
      • QUERYFILE_LONG_OPT

        public static final java.lang.String QUERYFILE_LONG_OPT
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      • OUTFILE_LONG_OPT

        public static final java.lang.String OUTFILE_LONG_OPT
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      • TRAINPROPFILE_LONG_OPT

        public static final java.lang.String TRAINPROPFILE_LONG_OPT
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      • MIN_BOOTSTRAP_WORDS_LONG_OPT

        public static final java.lang.String MIN_BOOTSTRAP_WORDS_LONG_OPT
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      • HIER_OUTFILE_LONG_OPT

        public static final java.lang.String HIER_OUTFILE_LONG_OPT
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      • BOOTSTRAP_LONG_OPT

        public static final java.lang.String BOOTSTRAP_LONG_OPT
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      • BOOTSTRAP_OUTFILE_LONG_OPT

        public static final java.lang.String BOOTSTRAP_OUTFILE_LONG_OPT
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      • SHORTSEQ_OUTFILE_LONG_OPT

        public static final java.lang.String SHORTSEQ_OUTFILE_LONG_OPT
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      • BIOMFILE_LONG_OPT

        public static final java.lang.String BIOMFILE_LONG_OPT
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      • METADATA_LONG_OPT

        public static final java.lang.String METADATA_LONG_OPT
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      • QUERYFILE_SHORT_OPT

        public static final java.lang.String QUERYFILE_SHORT_OPT
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      • OUTFILE_SHORT_OPT

        public static final java.lang.String OUTFILE_SHORT_OPT
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      • TRAINPROPFILE_SHORT_OPT

        public static final java.lang.String TRAINPROPFILE_SHORT_OPT
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      • FORMAT_SHORT_OPT

        public static final java.lang.String FORMAT_SHORT_OPT
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      • MIN_BOOTSTRAP_WORDS_SHORT_OPT

        public static final java.lang.String MIN_BOOTSTRAP_WORDS_SHORT_OPT
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      • HIER_OUTFILE_SHORT_OPT

        public static final java.lang.String HIER_OUTFILE_SHORT_OPT
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      • BOOTSTRAP_SHORT_OPT

        public static final java.lang.String BOOTSTRAP_SHORT_OPT
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      • BOOTSTRAP_OUTFILE_SHORT_OPT

        public static final java.lang.String BOOTSTRAP_OUTFILE_SHORT_OPT
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      • SHORTSEQ_OUTFILE_SHORT_OPT

        public static final java.lang.String SHORTSEQ_OUTFILE_SHORT_OPT
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      • BIOMFILE_SHORT_OPT

        public static final java.lang.String BIOMFILE_SHORT_OPT
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      • METADATA_SHORT_OPT

        public static final java.lang.String METADATA_SHORT_OPT
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      • TRAINPROPFILE_DESC

        public static final java.lang.String TRAINPROPFILE_DESC
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      • FORMAT_DESC

        public static final java.lang.String FORMAT_DESC
      • GENE_DESC

        public static final java.lang.String GENE_DESC
      • HIER_OUTFILE_DESC

        public static final java.lang.String HIER_OUTFILE_DESC
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      • BOOTSTRAP_DESC

        public static final java.lang.String BOOTSTRAP_DESC
      • BOOTSTRAP_OUTFILE_DESC

        public static final java.lang.String BOOTSTRAP_OUTFILE_DESC
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      • SHORTSEQ_OUTFILE_DESC

        public static final java.lang.String SHORTSEQ_OUTFILE_DESC
        See Also:
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    • Constructor Detail

      • CmdOptions

        public CmdOptions()